jgi.p|Nanoce1779_2|602972, mRNA_8526 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602972
Unique NamemRNA_8526
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_26:120431..121495 +

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Properties
Property NameValue
TranscriptId603058
TrackFilteredModels2
ProteinId602972
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:120431..121495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602972gene_8526Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602972mRNA_8526-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8526CDS_8526Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8526 ID=mRNA_8526|Name=jgi.p|Nanoce1779_2|602972|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
AGAAAAAACAGGTCGCAGAGCAAGCGATGAGCGTCGTGGTGCTCGGGGCG
ACGGGGAATGTGGGAAAGCACATCGTGAGGGCGCTGCTAACCACTCCAGA
CGGTCCCCAAGTCGTGGCAACAACTCGAGACGTCAGTTCCGAGGGTGCAA
AAGCGCTGCTGGCCTCCGTCTCTCCCGCTTTGTCTCAGTTGAGCTTGACG
GAGTTGGACATGACGGTGTCCGATGCAGCCGTGCTTGCGACGGCCCTGAC
CGGGTATAGTGTCATAGTACTAACTTTGCCTCAAGTCTTGGCGTCCGCGG
ACATGATCGCGTGCCAAAAAACTGTTGCCGAAGCCGTGGCAGATTGCATG
AAACATGCCGAGGAGTATGGGGAGGTCATTCCGCTCGTTGTCAAGCTGTC
GTCCTACGGCATCGACGGCCAACACAGCCAAGGCCCCCTTGGGGAGGCCC
ACCGCGCTGGCGAGGCTGCTTTCCAAGACAAGGGTATCCCGCTTGTGTCG
CTCCGCCCCACATCTTTCTTTTCTAATTTTGAGGCGTTTGACTGGCCTAC
TTTGCGTGACGGTGGCCGAAAAATCAGCAGTCCGCTAGGGCACGAGGCGC
GAGTGAATTGGGTAGCATGTGAAGACATAGGAAGAGTGGCAGCCGCCATC
ATAAACGAGCATTTGCGATTCTCGCAAGGCGGAAGGAAGCTACAGCACAT
CTTTCGTGCTGTGGACGTGGTGGGCCCTGCTTCTAATACCCTCAGTGCAC
CCGATCTCTGTCGTATTGTTGGACTATGCTTGGGGGCAAGACACGACGGA
AGCGGAGGCAGAGAAATGGATGCAGACACGTCGGTGATATATCAAGAGGT
CGCCTTACCCGCCCAGGAGGACTATCGAGGCTTATGGACGTTTCTACGAC
AGGGAGGTTTCGATGTGCAGGACTCCGAAAGCGCGACCGAGTGCCTGCGA
CTACTTGGAGGTCGGCCGCTCACCGAGTTCAAGACGTTTGTGGATGGGTT
GGTGCGCGATATGCATGACAAACAAATCAAAACAAATCAAAGGACAAAAT
AAAAGAGATAACGAG
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protein sequence of jgi.p|Nanoce1779_2|602972

>mRNA_8526-protein ID=mRNA_8526-protein|Name=jgi.p|Nanoce1779_2|602972|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MSVVVLGATGNVGKHIVRALLTTPDGPQVVATTRDVSSEGAKALLASVSP
ALSQLSLTELDMTVSDAAVLATALTGYSVIVLTLPQVLASADMIACQKTV
AEAVADCMKHAEEYGEVIPLVVKLSSYGIDGQHSQGPLGEAHRAGEAAFQ
DKGIPLVSLRPTSFFSNFEAFDWPTLRDGGRKISSPLGHEARVNWVACED
IGRVAAAIINEHLRFSQGGRKLQHIFRAVDVVGPASNTLSAPDLCRIVGL
CLGARHDGSGGREMDADTSVIYQEVALPAQEDYRGLWTFLRQGGFDVQDS
ESATECLRLLGGRPLTEFKTFVDGLVRDMHDKQIKTNQRTK*
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mRNA from alignment at scaffold_26:120431..121495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8526 ID=mRNA_8526|Name=jgi.p|Nanoce1779_2|602972|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at scaffold_26:120431..121495+ (Nannochloropsis oceanica)
AGAAAAAACAGGTCGCAGAGCAAGCGATGAGCGTCGTGGTGCTCGGGGCG
ACGGGGAATGTGGGAAAGCACATCGTGAGGGCGCTGCTAACCACTCCAGA
CGGTCCCCAAGTCGTGGCAACAACTCGAGACGTCAGTTCCGAGGGTGCAA
AAGCGCTGCTGGCCTCCGTCTCTCCCGCTTTGTCTCAGTTGAGCTTGACG
GAGTTGGACATGACGGTGTCCGATGCAGCCGTGCTTGCGACGGCCCTGAC
CGGGTATAGTGTCATAGTACTAACTTTGCCTCAAGTCTTGGCGTCCGCGG
ACATGATCGCGTGCCAAAAAACTGTTGCCGAAGCCGTGGCAGATTGCATG
AAACATGCCGAGGAGTATGGGGAGGTCATTCCGCTCGTTGTCAAGCTGTC
GTCCTACGGCATCGACGGCCAACACAGCCAAGGCCCCCTTGGGGAGGCCC
ACCGCGCTGGCGAGGCTGCTTTCCAAGACAAGGGTATCCCGCTTGTGTCG
CTCCGCCCCACATCTTTCTTTTCTAATTTTGAGGCGTTTGACTGGCCTAC
TTTGCGTGACGGTGGCCGAAAAATCAGCAGTCCGCTAGGGCACGAGGCGC
GAGTGAATTGGGTAGCATGTGAAGACATAGGAAGAGTGGCAGCCGCCATC
ATAAACGAGCATTTGCGATTCTCGCAAGGCGGAAGGAAGCTACAGCACAT
CTTTCGTGCTGTGGACGTGGTGGGCCCTGCTTCTAATACCCTCAGTGCAC
CCGATCTCTGTCGTATTGTTGGACTATGCTTGGGGGCAAGACACGACGGA
AGCGGAGGCAGAGAAATGGATGCAGACACGTCGGTGATATATCAAGAGGT
CGCCTTACCCGCCCAGGAGGACTATCGAGGCTTATGGACGTTTCTACGAC
AGGGAGGTTTCGATGTGCAGGACTCCGAAAGCGCGACCGAGTGCCTGCGA
CTACTTGGAGGTCGGCCGCTCACCGAGTTCAAGACGTTTGTGGATGGGTT
GGTGCGCGATATGCATGACAAACAAATCAAAACAAATCAAAGGACAAAAT
AAAAGAGATAACGAG
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Coding sequence (CDS) from alignment at scaffold_26:120431..121495+

>mRNA_8526 ID=mRNA_8526|Name=jgi.p|Nanoce1779_2|602972|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_26:120431..121495+ (Nannochloropsis oceanica)
ATGAGCGTCGTGGTGCTCGGGGCGACGGGGAATGTGGGAAAGCACATCGT
GAGGGCGCTGCTAACCACTCCAGACGGTCCCCAAGTCGTGGCAACAACTC
GAGACGTCAGTTCCGAGGGTGCAAAAGCGCTGCTGGCCTCCGTCTCTCCC
GCTTTGTCTCAGTTGAGCTTGACGGAGTTGGACATGACGGTGTCCGATGC
AGCCGTGCTTGCGACGGCCCTGACCGGGTATAGTGTCATAGTACTAACTT
TGCCTCAAGTCTTGGCGTCCGCGGACATGATCGCGTGCCAAAAAACTGTT
GCCGAAGCCGTGGCAGATTGCATGAAACATGCCGAGGAGTATGGGGAGGT
CATTCCGCTCGTTGTCAAGCTGTCGTCCTACGGCATCGACGGCCAACACA
GCCAAGGCCCCCTTGGGGAGGCCCACCGCGCTGGCGAGGCTGCTTTCCAA
GACAAGGGTATCCCGCTTGTGTCGCTCCGCCCCACATCTTTCTTTTCTAA
TTTTGAGGCGTTTGACTGGCCTACTTTGCGTGACGGTGGCCGAAAAATCA
GCAGTCCGCTAGGGCACGAGGCGCGAGTGAATTGGGTAGCATGTGAAGAC
ATAGGAAGAGTGGCAGCCGCCATCATAAACGAGCATTTGCGATTCTCGCA
AGGCGGAAGGAAGCTACAGCACATCTTTCGTGCTGTGGACGTGGTGGGCC
CTGCTTCTAATACCCTCAGTGCACCCGATCTCTGTCGTATTGTTGGACTA
TGCTTGGGGGCAAGACACGACGGAAGCGGAGGCAGAGAAATGGATGCAGA
CACGTCGGTGATATATCAAGAGGTCGCCTTACCCGCCCAGGAGGACTATC
GAGGCTTATGGACGTTTCTACGACAGGGAGGTTTCGATGTGCAGGACTCC
GAAAGCGCGACCGAGTGCCTGCGACTACTTGGAGGTCGGCCGCTCACCGA
GTTCAAGACGTTTGTGGATGGGTTGGTGCGCGATATGCATGACAAACAAA
TCAAAACAAATCAAAGGACAAAATAA
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Synonyms
Publications