jgi.p|Nanoce1779_2|602971, mRNA_8525 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602971
Unique NamemRNA_8525
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length655
Alignment locationscaffold_26:119507..120249 -

Link to JBrowse

Properties
Property NameValue
TranscriptId603057
TrackFilteredModels2
ProteinId602971
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:119507..120249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602971gene_8525Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602971mRNA_8525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8525CDS_8525Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8525 ID=mRNA_8525|Name=jgi.p|Nanoce1779_2|602971|organism=Nannochloropsis oceanica|type=mRNA|length=655bp
CAGGACAGTCAAGGCAAGGGATCGCGCCATGCTGTTCATCCGCGCCCTCT
TTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCACCGCTGCTTTTCAAGC
GCCACGGCATCTTCGCCCTCATTATCTTCCCACACCGACACCAACACAAA
TGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAGGCATATCATGCGCTGG
TACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACGGGGGGTACCAAGATGG
GACCTCACTCTGGGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGGCGC
GGGCATTGGGAATGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGTCTT
ATGATTGCAGCGTCAGGCAATTGATAGAGATAGAACGTGCAGGAAAATCG
AAAGCTCCGGCGGCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGATAG
TCTTGGCGTGGAGGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGATTG
TGACACAAGCAATCCAATTATTCTCCCGAATATTAATCAGAGGGGCGACT
CGTGTGTAGATCGACTGGAAAACAGCGGAAAATTAACAAGAATGGATCTC
TACCGATTTGCCTTACTCCTTATTACCCTGAGGAAGAAAAGAAAAGAACT
CCCAC
back to top

protein sequence of jgi.p|Nanoce1779_2|602971

>mRNA_8525-protein ID=mRNA_8525-protein|Name=jgi.p|Nanoce1779_2|602971|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MLFIRALFATPICRRCSSHRCFSSATASSPSLSSHTDTNTNAFAGLSRQD
LKAYHALVRSAQVSVALQRGVPRWDLTLGIVLHYLPVPPGAGIGNVRQGL
ISSLQESYDCSVRQLIEIERAGKSKAPAAAVKRFIKSKRDSLGVEDDEGG
TGASSGIVTQAIQLFSRILIRGATRV*
back to top

mRNA from alignment at scaffold_26:119507..120249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8525 ID=mRNA_8525|Name=jgi.p|Nanoce1779_2|602971|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at scaffold_26:119507..120249- (Nannochloropsis oceanica)
CAGGACAGTCAAGGCAAGGGATCGCGCCATGCTGTTCATCCGCGCCCTCT
TTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCACCGCTGCTTTTCAAGC
GCCACGGCATCTTCGCCCTCATTATCTTCCCACACCGACACCAACACAAA
TGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAGGCATATCATGCGCTGG
TACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACGGGGGGTACCAAGATGG
GACCTGTGCGGCGACTGTAGAAGGTAGTAAGGAACTCTACAAACTCTTGC
GAGACACCCGGACGCGGCCTTCATTCCTTACCCCTTTCGCAAGCACTCTG
GGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGGCGCGGGCATTGGGAA
TGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGTCTTATGATTGCAGCG
TCAGGCAATTGATAGAGATAGAACGTGCAGGAAAATCGAAAGCTCCGGCG
GCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGATAGTCTTGGCGTGGA
GGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGATTGTGACACAAGCAA
TCCAATTATTCTCCCGAATATTAATCAGAGGGGCGACTCGTGTGTAGATC
GACTGGAAAACAGCGGAAAATTAACAAGAATGGATCTCTACCGATTTGCC
TTACTCCTTATTACCCTGAGGAAGAAAAGAAAAGAACTCCCAC
back to top

Coding sequence (CDS) from alignment at scaffold_26:119507..120249-

>mRNA_8525 ID=mRNA_8525|Name=jgi.p|Nanoce1779_2|602971|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_26:119507..120249- (Nannochloropsis oceanica)
CACTCTGGGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGGCGCGGGCA
TTGGGAATGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGTCTTATGAT
TGCAGCGTCAGGCAATTGATAGAGATAGAACGTGCAGGAAAATCGAAAGC
TCCGGCGGCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGATAGTCTTG
GCGTGGAGGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGATTGTGACA
CAAGCAATCCAATTATTCTCCCGAATATTAATCAGAGGGGCGACTCGTGT
GTAGATGCTGTTCATCCGCGCCCTCTTTGCCACGCCAATTTGCCGCCGCT
GCTCCTCTCACCGCTGCTTTTCAAGCGCCACGGCATCTTCGCCCTCATTA
TCTTCCCACACCGACACCAACACAAATGCCTTTGCCGGCCTGTCCCGCCA
AGATCTGAAGGCATATCATGCGCTGGTACGGAGTGCTCAGGTTTCCGTTG
CTTTGCAACGGGGGGTACCAAGATGGGACCTCACTCTGGGCATCGTCCTG
CACTATTTGCCTGTTCCGCCTGGCGCGGGCATTGGGAATGTGAGACAGGG
TTTGATCTCATCCCTGCAAGAGTCTTATGATTGCAGCGTCAGGCAATTGA
TAGAGATAGAACGTGCAGGAAAATCGAAAGCTCCGGCGGCCGCAGTGAAG
CGCTTTATAAAGTCGAAACGAGATAGTCTTGGCGTGGAGGATGATGAGGG
GGGGACAGGTGCAAGTAGCGGGATTGTGACACAAGCAATCCAATTATTCT
CCCGAATATTAATCAGAGGGGCGACTCGTGTGTAGATGCTGTTCATCCGC
GCCCTCTTTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCACCGCTGCTT
TTCAAGCGCCACGGCATCTTCGCCCTCATTATCTTCCCACACCGACACCA
ACACAAATGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAGGCATATCAT
GCGCTGGTACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACGGGGGGTACC
AAGATGGGACCT
back to top
Synonyms
Publications