jgi.p|Nanoce1779_2|673498, mRNA_8524 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673498
Unique NamemRNA_8524
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_26:117908..119505 +

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Properties
Property NameValue
TranscriptId673584
TrackFilteredModels2
ProteinId673498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:117908..119505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673498gene_8524Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673498mRNA_8524-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8524CDS_8524Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8524 ID=mRNA_8524|Name=jgi.p|Nanoce1779_2|673498|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
AGGTACAGACAATCTCAAGCAGCATGCCCAGCGGCAGCAGTATTGACACG
TCTTGGCGGCATCCACAGCCTCTCCCAAAATTTTTGCGTCTCGTATTGCA
TTTTCTCCCGTTGTGTCTCCTCCCTACCCTACCCACCCCTCCTCCCTGAA
CAAACTGAGACAGACAGTACTTTTACAACTATCTGAAGGGGATGCCTTCC
GACGCCACGCTTCCGGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCT
TCGCGACCGCGTACAAGCACATCGTGCGCTAAAGATCTTCACCGTTATAA
ATTGGATCACCATAATTGTGGCCGTCTTGGCCGCGATAGCAGAGCTTCTT
TCTTTGATAAATATGAGCAAAAAAACGGTTCCAAGCATAACGGTTCGGTT
ATACTGCCTCTTCTTCTTGGTAATCATAATCTTAAGCGAGCTTGAGTGGA
GCAAGCCTGTGAGGGACAGCGCGATTACCACGTCGTGGTTTTGGAGAGGC
GTATTTCAGATTTTTGTGGCGGCCCTCGTCTACGAGATGAAGCCACAAGG
CTCGAGTGTCACCGAGGCCGAGCAGAATTTTATCATCTTCACCTCGTTGG
TCCTGCTCGTCATCGGATTTCTGTACGCAGGCATGGGGTTGTGCTTCGTC
AAAAGGTGGCGGGACTCAAATCTAGCCAAATACCGCACGATGCGTGCTCA
TGCTGAAATGGCCGACGAATTGCAAGGCGACCCTTCACTAGCGCCGCCAC
CAAGGGTGTAGGATTGTAAACGAAGGAGACGAAAAAGAAAGACTGTCGGG
AGGGTGAGACGTAGAGAATAAGACACAGAAAGAAGGCCGTTGCATTTCGG
TAACTGCTTATTACTCACATACACGGCAGGAGAATGTGCAGCAGAGAAGG
AAAAAGACAAGGTAGTGTAAGCAACTC
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protein sequence of jgi.p|Nanoce1779_2|673498

>mRNA_8524-protein ID=mRNA_8524-protein|Name=jgi.p|Nanoce1779_2|673498|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MPSDATLPGSQMPAVSAHPLRDRVQAHRALKIFTVINWITIIVAVLAAIA
ELLSLINMSKKTVPSITVRLYCLFFLVIIILSELEWSKPVRDSAITTSWF
WRGVFQIFVAALVYEMKPQGSSVTEAEQNFIIFTSLVLLVIGFLYAGMGL
CFVKRWRDSNLAKYRTMRAHAEMADELQGDPSLAPPPRV*
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mRNA from alignment at scaffold_26:117908..119505+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8524 ID=mRNA_8524|Name=jgi.p|Nanoce1779_2|673498|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_26:117908..119505+ (Nannochloropsis oceanica)
AGGTACAGACAATCTCAAGCAGCATGCCCAGCGGCAGCAGTATTGACACG
TCTTGGCGGCATCCACAGCCTCTCCCAAAATTTTTGCGTCTCGTATTGCA
TTTTCTCCCGTTGTGTCTCCTCCCTACCCTACCCACCCCTCCTCCCTGAA
CAAACTGAGACAGACAGTACTTTTACAACTATCTGAAGGGGATGCCTTCC
GACGCCACGCTTCCGGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCT
TCGCGACCGCGTACAAGCACATCGTGCGCTAAAGGTATGTTACCGAGAAT
TGTCAGCATTCATAAGTTCCTTCAGACGAAAGCAGCCGCTCGTTCGTAGG
GGGTGTAGGTGGGATTCTCGGGTGGGAAGGGTAGAAAGAGAGGGCCCGGT
CCATCTTTTGTTCGTGCCTGAGACAATTTATTAAATGTGCCTGTCCACGT
GAACGCAAAAAAAAGAGGTACAAGTTGAGGAGGCGGGGCACATCGGAAAA
GAAGTGAAACAAAAGTGTGTGGCCCTACCATTTAACTCACACCAGCACTC
CACCAAACCACACATATCCAGATCTTCACCGTTATAAATTGGATCACCAT
AATTGTGGCCGTCTTGGCCGCGATAGCAGAGCTTCTTTCTTTGATAAATA
TGAGCAAAAAAACGGTTCCAAGCATAACGGTTCGGTTATACTGCCTCTTC
TTCTTGGTAATCATAATCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGAG
GGACAGCGCGATTACCACGTCGTGGTTTTGGAGAGGCGTATTTCAGATTT
TTGTGGCGGCCCTCGTCTACGAGGTAAGTCCTTCACTGACACTCTGTTTT
CTGTGTATATACGTATGCATAACTGTATATTTATATGTGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATATATGTATGTATATATGTATGTATGACTGTATGTATAAAGGTAT
CTAGACATATGTATGCATACATGTCTACATCTTTTTATGTGTTTACTTCC
TCTTGGAGGGGATGTGGAGTGAATCATTTACAAGCATATCTGAGTATCAT
TATTCTATCACTTACCATGGTAAGAATGCCCAGTGAGTGATTGCCATGCA
CACCGCCTTCTCACACCGTTTCTAATCGTTTTGTCTCCTGGAACCACACT
CCCTCAGATGAAGCCACAAGGCTCGAGTGTCACCGAGGCCGAGCAGAATT
TTATCATCTTCACCTCGTTGGTCCTGCTCGTCATCGGATTTCTGTACGCA
GGCATGGGGTTGTGCTTCGTCAAAAGGTGGCGGGACTCAAATCTAGCCAA
ATACCGCACGATGCGTGCTCATGCTGAAATGGCCGACGAATTGCAAGGCG
ACCCTTCACTAGCGCCGCCACCAAGGGTGTAGGATTGTAAACGAAGGAGA
CGAAAAAGAAAGACTGTCGGGAGGGTGAGACGTAGAGAATAAGACACAGA
AAGAAGGCCGTTGCATTTCGGTAACTGCTTATTACTCACATACACGGCAG
GAGAATGTGCAGCAGAGAAGGAAAAAGACAAGGTAGTGTAAGCAACTC
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Coding sequence (CDS) from alignment at scaffold_26:117908..119505+

>mRNA_8524 ID=mRNA_8524|Name=jgi.p|Nanoce1779_2|673498|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_26:117908..119505+ (Nannochloropsis oceanica)
ATGCCTTCCGACGCCACGCTTCCGGGCTCCCAGATGCCTGCCGTGTCAGC
CCATCCTCTTCGCGACCGCGTACAAGCACATCGTGCGCTAAAGATCTTCA
CCGTTATAAATTGGATCACCATAATTGTGGCCGTCTTGGCCGCGATAGCA
GAGCTTCTTTCTTTGATAAATATGAGCAAAAAAACGGTTCCAAGCATAAC
GGTTCGGTTATACTGCCTCTTCTTCTTGGTAATCATAATCTTAAGCGAGC
TTGAGTGGAGCAAGCCTGTGAGGGACAGCGCGATTACCACGTCGTGGTTT
TGGAGAGGCGTATTTCAGATTTTTGTGGCGGCCCTCGTCTACGAGATGAA
GCCACAAGGCTCGAGTGTCACCGAGGCCGAGCAGAATTTTATCATCTTCA
CCTCGTTGGTCCTGCTCGTCATCGGATTTCTGTACGCAGGCATGGGGTTG
TGCTTCGTCAAAAGGTGGCGGGACTCAAATCTAGCCAAATACCGCACGAT
GCGTGCTCATGCTGAAATGGCCGACGAATTGCAAGGCGACCCTTCACTAG
CGCCGCCACCAAGGGTGTAGATGCCTTCCGACGCCACGCTTCCGGGCTCC
CAGATGCCTGCCGTGTCAGCCCATCCTCTTCGCGACCGCGTACAAGCACA
TCGTGCGCTAAAGATCTTCACCGTTATAAATTGGATCACCATAATTGTGG
CCGTCTTGGCCGCGATAGCAGAGCTTCTTTCTTTGATAAATATGAGCAAA
AAAACGGTTCCAAGCATAACGGTTCGGTTATACTGCCTCTTCTTCTTGGT
AATCATAATCTTAAGCGAGCTTGAGTGGAGCAAGCCTGTGAGGGACAGCG
CGATTACCACGTCGTGGTTTTGGAGAGGCGTATTTCAGATTTTTGTGGCG
GCCCTCGTCTACGAGATGAAGCCACAAGGCTCGAGTGTCACCGAGGCCGA
GCAGAATTTTATCATCTTCACCTCGTTGGTCCTGCTCGTCATCGGATTTC
TGTACGCAGGCATGGGGTTGTGCTTCGTCAAAAGGTGGCGGGACTCAAAT
CTAGCCAAATACCGCACGATGCGTGCTCATGCTGAAATGGCCGACGAATT
GCAAGGCGACCCTTCACTAGCGCCGCCACCAAGGGTGTAGATGCCTTCCG
ACGCCACGCTTCCGGGCTCCCAGATGCCTGCCGTGTCAGCCCATCCTCTT
CGCGACCGCGTACAAGCACATCGTGCGCTAAAGATCTTCACCGTTATAAA
TTGGATCACCATAATTGTGGCCGTCTTGGCCGCGATAGCAGAGCTTCTTT
CTTTGATAAATATGAGCAAAAAAACGGTTCCAAGCATAACGGTTCGGTTA
TACTGCCTCTTCTTCTTGGTAATCATAATCTTAAGCGAGCTTGAGTGGAG
CAAGCCTGTGAGGGACAGCGCGATTACCACGTCGTGGTTTTGGAGAGGCG
TATTTCAGATTTTTGTGGCGGCCCTCGTCTACGAGATGAAGCCACAAGGC
TCGAGTGTCACCGAGGCCGAGCAGAATTTTATCATCTTCACCTCGTTGGT
CCTGCTCGTCATCGGATTTCTGTACGCAGGCATGGGGTTGTGCTTCGTCA
AAAGGTGGCGGGACTCAAATCTAGCCAAATACCGCACGATGCGTGCTCAT
GCTGAAATGGCCGACGAATTGCAAGGCGACCCTTCACTAGCGCCGCCACC
AAGGGTGTAG
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Synonyms
Publications