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Properties
| Property Name | Value |
|---|
| TranscriptId | 603051 |
| Track | FilteredModels2 |
| ProteinId | 602965 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:114661..117931 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8523 ID=mRNA_8523|Name=jgi.p|Nanoce1779_2|602965|organism=Nannochloropsis oceanica|type=mRNA|length=2837bp
TGCTGCTTGAGATTGTCTGTACCTAGGTGTAGGTAATGCTTTCTATGCTC
TCGAGGGAAGTATTACATAACAGTCTTCGAGGTTTGATGCGATGATGGCG
AGTTTATGTTGACGAACGGAGATCCGATCGCAATTCTTACACTGCGCACA
CTTTGTAGTGCACACACAGACACACATCCACACATAGGATGGGTAAGAAT
AAACGCGGCAGTGGCAGCAGCCGTAAACCTTCCGGCAGCTCCGGTGTGGG
TGGGGCTGGAAGCTTCGCCCTGGGACTTGCCCTCGGTGCAAAACCAGCCA
TCAAAAAGACCCACGCTATGTCTATGCTGGCGACTGACCAGCCGGCTGAA
AGCAACTCTGCCGCCCGCAAACGACTGCGTGCGGCTCGTCCTGCGCCTCC
CACATCGTTTCGAGCGAGTAAAGATCCTCTTTTGGAGTCCAGCAGCGCCC
GCGTGACGAAGAAGCAGCGGTCTGCCAACCCCGACTATGATGATGCCTAC
CGTAATCTCCTGGAGCGCACTGAGGGACAAGCGCGGAGCCAGGCCTTCCA
CCGGCAAGAGGCCCGAAAGCGAAGAGCTCAAGGCAAGACGCGGAATGGAC
TCATTGCACCTCCGATATTTGTGGACATGGGGGTCAGCCCATCGATTGCG
GCAGCGGTGTCAGCAGGAGCAACCTTATCAAGCGTCGGGGAGTTTGTGGG
TAGCCTCTGCGCGGGGTTGGAAAAAGAGCAGCGGGAGGAAGAGGACGAGA
AGGGGCAGGTGAAGAAGGAAGGTCGAAGGAGAAGAAATGGACCAGGGGGC
AAGCATGGCATGGGCGATGAGGAGGTAGTAGCGAGAGGTCCCAAGAAGCA
CAACCCCTTTGCGTCCTTGGGGTCATGTGACGAGGATGACGAGGATGAGC
AGGAGGGAAATTCGCCCGGCGTGGTTTTCCAGCCCTCTGTGCTGCAACCG
TCCTGTGTGCTCTCATCTCAGTCGCAGCCTTTGGACCAGGATACGACTGG
ATCACTGGGGGAAGCCCCGCCGAAGCCGGGTGGAGAAACTGGAGATAAAG
CCTCTTGGAGGGGTCAAAATATTGAAAACGATTGGAGTTCCCTCAGTATG
GAGGCGCTGTCCTCGTCGCTCTTGGACGTAGGGACTTTGCCAATGAAACC
CCTGTCAATTTCCCCTGTTGATAACCACGAGAGAAAGAGAGAAAATAACG
ATTTGTTTACCTCCGCGACGTCAGAAGCACAGCCGCCACTCCCCATTTTC
GTCCATTCCCCAGTGACAGCATCAAAGGATAACGTGGAATGGGAAGGCAC
GAATGTCTTGCCAGTAATAGGCGAAGGAGGTAATGGCGAAGGACATCAAG
TCAGCACGCATGTCACAATAGAGGATTTTCACGACTTGTGAAGTAATGTA
AATAGAGTTCTCATCAAGTAGACCAAACAAAATATGGTTAGTGAATATCG
AGAAGATGCAACAATATGGTTGCTCATTCCCAATTTTATTTAATCCCACG
GTACGTAATTTTGTCTCATCGCTTAGCTACTTAAGATTGCCTGAAGTTTA
CCTCCCATAGTAGACGGAGTGATGAGGGAATCCACAGCAACTTCACACAT
ACCGTAGGGCTCTTCGTGTATAGTAAACAGCCCATGTGTAAGAAAAGCCA
AGAAAGACCGCAGTGCAGCTTCTCCCGGCATCGATAAGGCCGGCAGACTT
GTCCTTAGCTCTATTTGGCCTTGCCATATAGGTGCGCTTGAGAAAGACTG
GCTGATTCTTGTACCACTCAGTACAGCAGCAAGCGGTTGATCGTCCAGTG
TGCGAAAGAGAAACGCACATGAGAAGAACGACGAACTAGCATGTATTGAG
CCCGGCATCATCACTCGGCCTGCCTTTCTTAACTCGAGGAGTTTGTAATC
GTTGAGCGAACATCCTGCCGCCGAAGAAAGCAATGCGTGGTGGGCAGAGA
AGCCTGGAATCGCTTCCATAAAAGAGAGCAAGTTCAGAGTATCTGCGGAG
ATGTCTAAAGAGGAAAGGCCTTCTGACACCAGAGAGTGAACAGTCTGTAT
TGGCCGAGTCTTTGATGATGTAAGCGAAGCCCACAGCGTTTGGAAGACTG
AAAAGCGCCCACTTTGACTCTCCCATGGTGGAATCAAGAAATGGTAGAAC
GGTAGCGATAGTACGGAGCTTCTCAAGTAAACAGTAGACGCGACGGCATT
TTGATAGGGAGAACCATTATTCTCCGAACATCGTTTGTGGCGCATGGTGG
TGGAGGAACTCCAAGCTGTCACCTCATCTGGCTTGTGCTCCAGAGAACCG
AATGAAGGCGATGCATGCTCGAGATCCACTTTCACAAGCCCAAACTCGGC
TTCATGTGTGAACTCCTTTTCGCCTGCTTGCGTCAATAAGACTCGCCAAT
AACGCTCTTCCTCTTCATCCCGCCTTTCAGCTTCCACGCAAGGAAAGTTT
ATGTCAACCGCCAACGAAAGGTTACCCAAGCTCGAGGAGGACGATGGGCT
GGAGGGCTGTAAGACCTCAAGAAGAAAATGTGCCTGCAGAAAGAATGTGG
AAGGCATTGTGACATTTCAGTCAAGCTCTACTTCAAAAATAGGGACAAAG
GACTCACACTTAGGGAAGCGCCGGGAACCAATCCATCTCCCCATTGCGCA
GGAATTCCAGCATAGCACGCCTGTGGTCCTCCTATCAAGCGCGCCCGCTC
TTGGTCAAGTACGATAAGCGAAAGACCCAAGCGCTCCAACCTTTGAAACG
CGGGGCGAATAAATTGAGCGAGAATGATTAAGGACTTCATTTCGACTGAA
AACAAAGTTTACTTACTTGAGATTAGTATTATTGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|602965 >mRNA_8523-protein ID=mRNA_8523-protein|Name=jgi.p|Nanoce1779_2|602965|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MGKNKRGSGSSRKPSGSSGVGGAGSFALGLALGAKPAIKKTHAMSMLATD
QPAESNSAARKRLRAARPAPPTSFRASKDPLLESSSARVTKKQRSANPDY
DDAYRNLLERTEGQARSQAFHRQEARKRRAQGKTRNGLIAPPIFVDMGVS
PSIAAAVSAGATLSSVGEFVGSLCAGLEKEQREEEDEKGQVKKEGRRRRN
GPGGKHGMGDEEVVARGPKKHNPFASLGSCDEDDEDEQEGNSPGVVFQPS
VLQPSCVLSSQSQPLDQDTTGSLGEAPPKPGGETGDKASWRGQNIENDWS
SLSMEALSSSLLDVGTLPMKPLSISPVDNHERKRENNDLFTSATSEAQPP
LPIFVHSPVTASKDNVEWEGTNVLPVIGEGGNGEGHQVSTHVTIEDFHDL
* back to topmRNA from alignment at scaffold_26:114661..117931- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8523 ID=mRNA_8523|Name=jgi.p|Nanoce1779_2|602965|organism=Nannochloropsis oceanica|type=mRNA|length=3271bp|location=Sequence derived from alignment at scaffold_26:114661..117931- (Nannochloropsis oceanica)
TGCTGCTTGAGATTGTCTGTACCTAGGTGTAGGTAATGCTTTCTATGCTC
TCGAGGGAAGTATTACATAACAGTCTTCGAGGTTTGATGCGATGATGGCG
AGTTTATGTTGACGAACGGAGATCCGATCGCAATTCTTACACTGCGCACA
CTTTGTAGTGCACACACAGACACACATCCACACATAGGATGGGTAAGAAT
AAACGCGGCAGTGGCAGCAGCCGTAAACCTTCCGGCAGCTCCGGTGTGGG
TGGGGCTGGAAGCTTCGGTAAGTGATTGAGGGCTGCTTGCCCGGTTGTCC
GGTGTACCCCGCATGGTTACGTATTTTCCTCCAGATATTGACCCCGCCTA
CCCCTCTACAAACCCTACACGCACACACAGCCCTGGGACTTGCCCTCGGT
GCAAAACCAGCCATCAAAAAGACCCACGCTATGTCTATGCTGGCGACTGA
CCAGCCGGCTGAAAGCAACTCTGCCGCCCGCAAACGACTGCGTGCGGCTC
GTCCTGCGCCTCCCACATCGTTTCGAGCGAGTAAAGATCCTCTTTTGGAG
TCCAGCAGCGCCCGCGTGACGAAGAAGCAGCGGTCTGCCAACCCCGACTA
TGATGATGCCTACCGTAATCTCCTGGAGCGCACTGAGGGACAAGCGCGGA
GCCAGGCCTTCCACCGGCAAGAGGCCCGAAAGCGAAGAGCTCAAGGCAAG
ACGCGGAATGGACTCATTGCACCTCCGATATTTGTGGACATGGGGGTCAG
CCCATCGATTGCGGCAGCGGTGTCAGCAGGAGCAACCTTATCAAGCGTCG
GGGAGTTTGTGGGTAGCCTCTGCGCGGGGTTGGAAAAAGAGCAGCGGGAG
GAAGAGGACGAGAAGGGGCAGGTGAAGAAGGAAGGTCGAAGGAGAAGAAA
TGGACCAGGGGGCAAGCATGGCATGGGCGATGAGGAGGTAGTAGCGAGAG
GTCCCAAGAAGCACAACCCCTTTGCGTCCTTGGGGTCATGTGACGAGGAT
GACGAGGATGAGCAGGAGGGAAATTCGCCCGGCGTGGTTTTCCAGCCCTC
TGTGCTGCAACCGTCCTGTGTGCTCTCATCTCAGTCGCAGCCTTTGGACC
AGGATACGACTGGATCACTGGGGGAAGCCCCGCCGAAGCCGGGTGGAGAA
ACTGGAGATAAAGCCTCTTGGAGGGGTCAAAATATTGAAAACGATTGGAG
TTCCCTCAGTATGGAGGCGCTGTCCTCGTCGCTCTTGGACGTAGGGACTT
TGCCAATGAAACCCCTGTCAATTTCCCCTGTTGATAACCACGAGAGAAAG
AGAGAAAATAACGATTTGTTTACCTCCGCGACGTCAGAAGCACAGCCGCC
ACTCCCCATTTTCGTCCATTCCCCAGTGACAGCATCAAAGGATAACGTGG
AATGGGAAGGCACGAATGTCTTGCCAGTAATAGGCGAAGGAGGTAATGGC
GAAGGACATCAAGTCAGCACGCATGTCACAATAGAGGATTTTCACGACTT
GTGAAGTAATGTAAATAGAGTTCTCATCAAGTAGACCAAACAAAATATGG
TTAGTGAATATCGAGAAGATGCAACAATATGGTTGCTCATTCCCAATTTT
ATTTAATCCCACGGTACGTAATTTTGTCTCATCGCTTAGCTACTTAAGAT
TGCCTGAAGTTTACCTCCCATAGTAGACGGAGTGATGAGGGAATCCACAG
CAACTTCACACATACCGTAGGGCTCTTCGTGTATAGTAAACAGCCCATGT
GTAAGAAAAGCCAAGAAAGACCGCAGTGCAGCTTCTCCCGGCATCGATAA
GGCCGGCAGACTTGTCCTTAGCTCTATTTGGCCTTGCCATATAGGTGCGC
TTGAGAAAGACTGGCTGATTCTTGTACCACTCAGTACAGCAGCAAGCGGT
TGATCGTCCAGTGTGCGAAAGAGAAACGCACATGAGAAGAACGACGAACT
AGCATGTATTGAGCCCGGCATCATCACTCGGCCTGCCTTTCTTAACTCGA
GGAGTTTGTAATCGTTGAGCGAACATCCTGCCGCCGAAGAAAGCAATGCG
TGGTGGGCAGAGAAGCCTGGAATCGCTTCCATAAAAGAGAGCAAGTTCAG
AGTATCTGCGGAGATGTCTAAAGAGGAAAGGCCTTCTGACACCAGAGAGT
GAACAGTCTGTATTGGCCGAGTCTGTGAGTGGTGCAAAAACGTTAAAGTT
GTGGATTGTGACTTGTTCGCGACTTTGTATAGAATTGCACGAAAACATAC
CTTTGATGATGTAAGCGAAGCCCACAGCGTTTGGAAGACTGAAAAGCGCC
CACTTTGACTCTCCCATGGTGGAATCAAGAAATGGTAGAACGGTAGCGAT
AGTACGGAGCTTCTCAAGTAAACAGTAGACGCGACGGCATTTTGATAGGG
AGAACCATTATTCTCCGAACATCGTTTGTGGCGCATGGTGGTGGAGGAAC
TCCAAGCTGTCACCTCATCTGTCGATCAGAATGTAATGGATCTGGTAAGA
GCGTACAAGTCTAGGCAGACTAATTACTACATGGTACAAACCTGGCTTGT
GCTCCAGAGAACCGAATGAAGGCGATGCATGCTCGAGATCCACTTTCACA
AGCCCAAACTCGGCTTCATGTGTGAACTCCTTTTCGCCTGCTTGCGTCTT
GTGAATGCATGAAGGCGGGGGAATTCAGAGAAGACGATTAATCACGAGTC
AGAAAAGGTAGTCCATATGAGCAAATTTCGTTGAGGTGCATTACCAATAA
GACTCGCCAATAACGCTCTTCCTCTTCATCCCGCCTTTCAGCTTCCACGC
AAGGAAAGTTTATGTCAACCGCCAACGAAAGGTTACCCAAGCTCGAGGAG
GACGATGGGCTGGAGGGCTGTAAGACCTCAAGAAGAAAATGTGCCTGCAG
AAAGAATGTGGAAGGCATTGTGACATTTCAGTCAAGCTCTACTTCAAAAA
TAGGGACAAAGGACTCACACTTAGGGAAGCGCCGGGAACCAATCCATCTC
CCCATTGCGCAGGAATTCCAGCATAGCACGCCTATCATTGAAGTGCGAAA
TAATAAGCATGAAGTATACGATGAATGAAACTGCTCGCTGCCTGATTATT
TTACCTGTGGTCCTCCTATCAAGCGCGCCCGCTCTTGGTCAAGTACGATA
AGCGAAAGACCCAAGCGCTCCAACCTTTGAAACGCGGGGCGAATAAATTG
AGCGAGAATGATTAAGGACTTCATTTCGACTGAAAACAAAGTTTACTTAC
TTGAGATTAGTATTATTGTAA back to topCoding sequence (CDS) from alignment at scaffold_26:114661..117931- >mRNA_8523 ID=mRNA_8523|Name=jgi.p|Nanoce1779_2|602965|organism=Nannochloropsis oceanica|type=CDS|length=2406bp|location=Sequence derived from alignment at scaffold_26:114661..117931- (Nannochloropsis oceanica)
GCCCTGGGACTTGCCCTCGGTGCAAAACCAGCCATCAAAAAGACCCACGC
TATGTCTATGCTGGCGACTGACCAGCCGGCTGAAAGCAACTCTGCCGCCC
GCAAACGACTGCGTGCGGCTCGTCCTGCGCCTCCCACATCGTTTCGAGCG
AGTAAAGATCCTCTTTTGGAGTCCAGCAGCGCCCGCGTGACGAAGAAGCA
GCGGTCTGCCAACCCCGACTATGATGATGCCTACCGTAATCTCCTGGAGC
GCACTGAGGGACAAGCGCGGAGCCAGGCCTTCCACCGGCAAGAGGCCCGA
AAGCGAAGAGCTCAAGGCAAGACGCGGAATGGACTCATTGCACCTCCGAT
ATTTGTGGACATGGGGGTCAGCCCATCGATTGCGGCAGCGGTGTCAGCAG
GAGCAACCTTATCAAGCGTCGGGGAGTTTGTGGGTAGCCTCTGCGCGGGG
TTGGAAAAAGAGCAGCGGGAGGAAGAGGACGAGAAGGGGCAGGTGAAGAA
GGAAGGTCGAAGGAGAAGAAATGGACCAGGGGGCAAGCATGGCATGGGCG
ATGAGGAGGTAGTAGCGAGAGGTCCCAAGAAGCACAACCCCTTTGCGTCC
TTGGGGTCATGTGACGAGGATGACGAGGATGAGCAGGAGGGAAATTCGCC
CGGCGTGGTTTTCCAGCCCTCTGTGCTGCAACCGTCCTGTGTGCTCTCAT
CTCAGTCGCAGCCTTTGGACCAGGATACGACTGGATCACTGGGGGAAGCC
CCGCCGAAGCCGGGTGGAGAAACTGGAGATAAAGCCTCTTGGAGGGGTCA
AAATATTGAAAACGATTGGAGTTCCCTCAGTATGGAGGCGCTGTCCTCGT
CGCTCTTGGACGTAGGGACTTTGCCAATGAAACCCCTGTCAATTTCCCCT
GTTGATAACCACGAGAGAAAGAGAGAAAATAACGATTTGTTTACCTCCGC
GACGTCAGAAGCACAGCCGCCACTCCCCATTTTCGTCCATTCCCCAGTGA
CAGCATCAAAGGATAACGTGGAATGGGAAGGCACGAATGTCTTGCCAGTA
ATAGGCGAAGGAGGTAATGGCGAAGGACATCAAGTCAGCACGCATGTCAC
AATAGAGGATTTTCACGACTTGTGAATGGGTAAGAATAAACGCGGCAGTG
GCAGCAGCCGTAAACCTTCCGGCAGCTCCGGTGTGGGTGGGGCTGGAAGC
TTCGCCCTGGGACTTGCCCTCGGTGCAAAACCAGCCATCAAAAAGACCCA
CGCTATGTCTATGCTGGCGACTGACCAGCCGGCTGAAAGCAACTCTGCCG
CCCGCAAACGACTGCGTGCGGCTCGTCCTGCGCCTCCCACATCGTTTCGA
GCGAGTAAAGATCCTCTTTTGGAGTCCAGCAGCGCCCGCGTGACGAAGAA
GCAGCGGTCTGCCAACCCCGACTATGATGATGCCTACCGTAATCTCCTGG
AGCGCACTGAGGGACAAGCGCGGAGCCAGGCCTTCCACCGGCAAGAGGCC
CGAAAGCGAAGAGCTCAAGGCAAGACGCGGAATGGACTCATTGCACCTCC
GATATTTGTGGACATGGGGGTCAGCCCATCGATTGCGGCAGCGGTGTCAG
CAGGAGCAACCTTATCAAGCGTCGGGGAGTTTGTGGGTAGCCTCTGCGCG
GGGTTGGAAAAAGAGCAGCGGGAGGAAGAGGACGAGAAGGGGCAGGTGAA
GAAGGAAGGTCGAAGGAGAAGAAATGGACCAGGGGGCAAGCATGGCATGG
GCGATGAGGAGGTAGTAGCGAGAGGTCCCAAGAAGCACAACCCCTTTGCG
TCCTTGGGGTCATGTGACGAGGATGACGAGGATGAGCAGGAGGGAAATTC
GCCCGGCGTGGTTTTCCAGCCCTCTGTGCTGCAACCGTCCTGTGTGCTCT
CATCTCAGTCGCAGCCTTTGGACCAGGATACGACTGGATCACTGGGGGAA
GCCCCGCCGAAGCCGGGTGGAGAAACTGGAGATAAAGCCTCTTGGAGGGG
TCAAAATATTGAAAACGATTGGAGTTCCCTCAGTATGGAGGCGCTGTCCT
CGTCGCTCTTGGACGTAGGGACTTTGCCAATGAAACCCCTGTCAATTTCC
CCTGTTGATAACCACGAGAGAAAGAGAGAAAATAACGATTTGTTTACCTC
CGCGACGTCAGAAGCACAGCCGCCACTCCCCATTTTCGTCCATTCCCCAG
TGACAGCATCAAAGGATAACGTGGAATGGGAAGGCACGAATGTCTTGCCA
GTAATAGGCGAAGGAGGTAATGGCGAAGGACATCAAGTCAGCACGCATGT
CACAATAGAGGATTTTCACGACTTGTGAATGGGTAAGAATAAACGCGGCA
GTGGCAGCAGCCGTAAACCTTCCGGCAGCTCCGGTGTGGGTGGGGCTGGA
AGCTTC back to top
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