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Properties
| Property Name | Value |
|---|
| TranscriptId | 603034 |
| Track | FilteredModels2 |
| ProteinId | 602948 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:106739..109704 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8520 ID=mRNA_8520|Name=jgi.p|Nanoce1779_2|602948|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp
CAGGTAAACAAAATGGACCGGAGAAGATGGATGCTCTTTGTCTTGCTCTG
TGTGGCCCGCCCGGCGGCTGCGAAGGAAGGAGACCAGAACCCGATGGTGT
ACGATGGCGGCTCCTGGCACGATTTAGACGAAAATATGGTGCCCGGAGAA
TCCCAACCGTATCCTCCCGTATCGGACTCGTGGCAGCAGCCGGAGACATC
CATCCACGTGCAAATCTCCTCCTTCCGGGACCACCGATGCCCCAAGACGC
TGTATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCACGCTGGG
GTGGTCCAGCAGAACAGCGAGGGGGACGTTGACTGCCTATTCAAGTACTG
CCAGTTGATGACAAAGGAGCTTGGCCAGGAACCCAAAAAAGGAAATGCCG
TGCCCGGCAAGAGCCGCCTGGACCCGTTTGTACTGGAGAACTGTCCATAT
GTGGACCAAATCAAGATCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCC
CACCTATGGCCGGTGAGGAAAAAGAGGGCAGGGAGGAGGGGGTACTGGAC
GAGATGTCTGAACCTGAGTTTCGAAGCACGGAAAAGGTGGCAATGATGCA
CTTGCCCAGCACACACTTCACTCGCGTTTCAATTCAGGTACCTCGGCTCA
AAGCTGATAGGGGATGAGGAATTCTGCATGCAGACCGACGCGCACATGGA
TTTCCTGTTTGAGTGGGACACGCTGCTGCTGGACATGTGGAGGCTGACCC
AGAACGAGTACGGGGTGCTCTCCACCTATGTCCCTCGCTTCGAGGAGATG
GGCCTCAACGCGAACGATCGATGGGAGGTGCCGCACATCTGCCGGGTCTT
CTTCACCCCGGGAGACGGCATGCCGCGCAACGAGCAAGCGAAGGCTGCCA
TGTGGCTCACGCGCCCCAAGATGACCAGCACTTGGGCCGCAGGCTTTGCT
TTTAATAAGTGCCACGCCGACAAGCGCACCCCATACGACCCTCACTTACC
CTCGCTCTTCGACGGGGAGGAATATTCACGGTTCGCCCGTCTCTGGACAC
GGGGTTATGATGTGTACACACCACACCGGTCCGTCGTTTATCACGACTAC
AACCACGGCCCTGACACCTCCGTCACCTCATCCTGGTCTCGCAGGGGCCA
GGAGCTGCAGCGCTCACGGAGTAGGCTGAATGTGCTGCTAGGCTACAAAG
ACGCCCCCGTTGCTCGCAACAGCACCGGGGCCCACGACTTGATGGGAAAG
TGGGACCTGGGCACACGCCGCAGCCTCGCACAGCTGATTGACTTCACGGG
TGTTGACACCATCAACCGCGAGGTGATCCACTCGTCATGCCAGCGCTTGG
CTTGGGTGCCCTTTGAGCGGCCTGGCGAGGGT back to topprotein sequence of jgi.p|Nanoce1779_2|602948 >mRNA_8520-protein ID=mRNA_8520-protein|Name=jgi.p|Nanoce1779_2|602948|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MDRRRWMLFVLLCVARPAAAKEGDQNPMVYDGGSWHDLDENMVPGESQPY
PPVSDSWQQPETSIHVQISSFRDHRCPKTLYNLFTKAKYPDRVHAGVVQQ
NSEGDVDCLFKYCQLMTKELGQEPKKGNAVPGKSRLDPFVLENCPYVDQI
KIMRVSAEEAKGPTYGR* back to topmRNA from alignment at scaffold_26:106739..109704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8520 ID=mRNA_8520|Name=jgi.p|Nanoce1779_2|602948|organism=Nannochloropsis oceanica|type=mRNA|length=2966bp|location=Sequence derived from alignment at scaffold_26:106739..109704- (Nannochloropsis oceanica)
CAGGTAAACAAAATGGACCGGAGAAGATGGATGCTCTTTGTCTTGCTCTG
TGTGGCCCGCCCGGCGGCTGCGAAGGAAGGAGACCAGAACCCGATGGTAG
GTAATACATTAGTGTGTATGTGTCACTTTCTCAACATGGGCATGTTCGAA
AATGTACCGATCTCTTTCTTTGCTGCAAGCTGTCCTGATAAAGCTGTCCT
GATAAGCTGACACATTCTTCACCCACGAAAACTTCGACCATGCCTGAAGG
TGTACGATGGCGGCTCCTGGCACGATTTAGACGAAAATATGGTGCCCGGA
GAATCCCAACCGTAAGTACATTTCCCAAAGCTTCATTTGCAATCTTCTCC
CCTTACCACCAATACTCTTGCCATCCTCCAGGTATCCTCCCGTATCGGAC
TCGTGGCAGCAGCCGGAGACATCCATCCACGTGCAAATCTCCTCCTTCCG
GGACCACCGATGCCCCAAGTGAGTGCCCACATCTCGTCTTGGGAGGTTTC
AGAGAAAAATAGAGGTGATTGCCTACACTCAAACTACCTTGCCGCACAAA
GTCGCCTCCCGCGTACTCACTTTTCGCTCCTGTCGTCACTCCCCCCTCAG
GACGCTGTATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCACG
CTGGGGTGGTCCAGCAGAACAGCGAGGGGGACGTTGGTGAGAGAGATGGA
AAAGGGAGGGATTGAAGGAAGAATAGAGATTGTGACTCCTGGCCCAATCC
TCTTGAATTAAAATTCATCCGTGTTCAAATTGGTCCATTTTCAAATTTAT
GCATTTTTTCGTAGACTGCCTATTCAAGTACTGCCAGTTGATGACAAAGG
AGCTTGGCCAGGAACCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCCGC
CTGGTACGTAAAGCGGGGTGAGAGGACGTCAGGGAGGGAACGCTGGCAGG
AGGGATGGGTGGCGCACGTATGTGCCCTGGTGGCACTTGGAATGATCTTT
CTTGCCTGTCGTTCACTTTCCTCTATCTGACTTCCTTCTCTCTGACATAG
GACCCGTTTGTACTGGAGAACTGTCCATATGTGGACCAAATCAAGATCAT
GCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACCTATGGCCGGTGAGGAA
AAAGAGGGCAGGGAGGAGGGGGTACTGGACGAGATGTCTGAACCTGAGTT
TCGAAGCACGGAAAAGGTGGCAATGATGCACTTGCCCAGCACACACTTCA
CTCGCGTTTCAATTCAGGTACCTCGGCTCAAAGCTGATAGGGGATGAGGA
ATTCTGCATGCAGACCGACGCGCACATGGATGTAAGTAAATGCACGTCCG
CCCGTTCCTACTCTTCCCTTCTTGTCTCCCTCCCTCACTTTTAGTCGTTC
CTTCCTTCCATTCCATTTCCCCCCGCTCCGACTCCACAGTTCCTGTTTGA
GTGGGACACGCTGCTGCTGGACATGTGGAGGCTGACCCAGAACGAGTACG
GGGTGCTCTCCACCTATGTCCCTCGCTTCGAGGAGATGGGCCTCAACGCG
AACGATCGATGGGAGGTGCGTGCAGAGAGGGAGGAGAGAGAGGAGAGGAA
CGGCAGGAATCAAGGCCGCGACGTGTCTATTAATATCTCTGTTCTTTTCA
CCACTCTCCCCCTCAATAAATCCTCTCCTGTCGCGGCGAATGTGCAGGTG
CCGCACATCTGCCGGGTCTTCTTCACCCCGGGAGACGGCATGCCGCGCAA
CGAGCAAGCGAAGGCTGCCATGTGGCTCACGCGGTACGTCCGGAGGCAAA
GGAGGAGGAAAGGTCCGGAGGTAATGGAGTAGGAAAGGAATGATGACGAA
CCAGAAAGCGAAAGCCCTCTTGTCATGGCTCGCCCTTCATTCGTTCCTCT
TATCGCTCCCGCCCCACACATTCGACCTCACTTCCAACAGCCCCAAGATG
ACCAGCACTTGGGCCGCAGGCTTTGCTTTTAATAAGGTAAAAGGCAGACA
GCGAGAACTCAGCGAGTCAACCAAAGAGGAAAAAGAAAAGGGAATGCCCG
CCTGTAAGCAGCCCGCCTCTTCCGCTCTCAATTTTCCTCCCTACCTCGCG
TCCCTCCACTAGTGCCACGCCGACAAGCGCACCCCATACGACCCTCACTT
ACCCTCGCTCTTCGACGGGGAGGAATATTCACGGTTCGCCCGTCTCTGGA
CACGGTAAGGCCGAAGAAAGAGGGAAGGGCGGAAGTGGGGAGGGAGGGAG
GAAAAGGTCTTGACTCACACTCACGCACGTGTGCCCTCCTCCCTTTGTGG
CACCTTTCCACGCACTCACTCGACACCTACCTGACACCCGCACAAATATT
TCACATCAACAAATCCTTTCTCTCTGGTGCAGGGGTTATGATGTGTACAC
ACCACACCGGTCCGTCGTTTATCACGACTACAACCACGGCCCTGACACCT
CCGTCACCTCATCCTGGTCTCGCAGGGGCCAGGAGCTGCAGGTAGGGGGG
CTTGGCGAAGTGAAGAAAGAGGAGCAAGAGTAAAGAAGGAGGAACGAGGA
AGAAGGAGGTGGAATTACTGCAAGATCTGCCGCCTACCTCTAATTTTCCA
TATTCGCTATCTCTGCACCTCCCCCAGCGCTCACGGAGTAGGCTGAATGT
GCTGCTAGGCTACAAAGACGCCCCCGTTGCTCGCAACAGCACCGGGGCCC
ACGACTTGATGGGAAAGTGGGACCTGGGCACACGCCGCAGCCTCGCACAG
CTGATTGACTTCACGGGTGTTGACACCATCAACCGCGAGGTGGGCGAGGG
GGAGAAAGGAAAAGGAGGGAGAAAGGAGGTGGTCTTCCAGGCCCTCCATG
CCATGGCTGCACACTTCCTCTACAGACTCTCATTCATTCTCTCTTATCTC
ACGCAGGTGATCCACTCGTCATGCCAGCGCTTGGCTTGGGTGCCCTTTGA
GCGGCCTGGCGAGGGT back to topCoding sequence (CDS) from alignment at scaffold_26:106739..109704- >mRNA_8520 ID=mRNA_8520|Name=jgi.p|Nanoce1779_2|602948|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_26:106739..109704- (Nannochloropsis oceanica)
GACCCGTTTGTACTGGAGAACTGTCCATATGTGGACCAAATCAAGATCAT
GCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACCTATGGCCGGTGAACTG
CCTATTCAAGTACTGCCAGTTGATGACAAAGGAGCTTGGCCAGGAACCCA
AAAAAGGAAATGCCGTGCCCGGCAAGAGCCGCCTGGACGCTGTATAATCT
TTTCACGAAGGCCAAGTACCCTGACCGCGTGCACGCTGGGGTGGTCCAGC
AGAACAGCGAGGGGGACGTTGGTATCCTCCCGTATCGGACTCGTGGCAGC
AGCCGGAGACATCCATCCACGTGCAAATCTCCTCCTTCCGGGACCACCGA
TGCCCCAAGTGTACGATGGCGGCTCCTGGCACGATTTAGACGAAAATATG
GTGCCCGGAGAATCCCAACCATGGACCGGAGAAGATGGATGCTCTTTGTC
TTGCTCTGTGTGGCCCGCCCGGCGGCTGCGAAGGAAGGAGACCAGAACCC
GATGGACCCGTTTGTACTGGAGAACTGTCCATATGTGGACCAAATCAAGA
TCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACCTATGGCCGGTGA
ACTGCCTATTCAAGTACTGCCAGTTGATGACAAAGGAGCTTGGCCAGGAA
CCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCCGCCTGGACGCTGTATA
ATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCACGCTGGGGTGGTC
CAGCAGAACAGCGAGGGGGACGTTGGTATCCTCCCGTATCGGACTCGTGG
CAGCAGCCGGAGACATCCATCCACGTGCAAATCTCCTCCTTCCGGGACCA
CCGATGCCCCAAGTGTACGATGGCGGCTCCTGGCACGATTTAGACGAAAA
TATGGTGCCCGGAGAATCCCAACCATGGACCGGAGAAGATGGATGCTCTT
TGTCTTGCTCTGTGTGGCCCGCCCGGCGGCTGCGAAGGAAGGAGACCAGA
ACCCGATGGACCCGTTTGTACTGGAGAACTGTCCATATGTGGACCAAATC
AAGATCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACCTATGGCCG
GTGAACTGCCTATTCAAGTACTGCCAGTTGATGACAAAGGAGCTTGGCCA
GGAACCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCCGCCTGGACGCTG
TATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCACGCTGGGGT
GGTCCAGCAGAACAGCGAGGGGGACGTTGGTATCCTCCCGTATCGGACTC
GTGGCAGCAGCCGGAGACATCCATCCACGTGCAAATCTCCTCCTTCCGGG
ACCACCGATGCCCCAAGTGTACGATGGCGGCTCCTGGCACGATTTAGACG
AAAATATGGTGCCCGGAGAATCCCAACCATGGACCGGAGAAGATGGATGC
TCTTTGTCTTGCTCTGTGTGGCCCGCCCGGCGGCTGCGAAGGAAGGAGAC
CAGAACCCGATGGACCCGTTTGTACTGGAGAACTGTCCATATGTGGACCA
AATCAAGATCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACCTATG
GCCGGTGAACTGCCTATTCAAGTACTGCCAGTTGATGACAAAGGAGCTTG
GCCAGGAACCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCCGCCTGGAC
GCTGTATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCACGCTG
GGGTGGTCCAGCAGAACAGCGAGGGGGACGTTGGTATCCTCCCGTATCGG
ACTCGTGGCAGCAGCCGGAGACATCCATCCACGTGCAAATCTCCTCCTTC
CGGGACCACCGATGCCCCAAGTGTACGATGGCGGCTCCTGGCACGATTTA
GACGAAAATATGGTGCCCGGAGAATCCCAACCATGGACCGGAGAAGATGG
ATGCTCTTTGTCTTGCTCTGTGTGGCCCGCCCGGCGGCTGCGAAGGAAGG
AGACCAGAACCCGATGGACCCGTTTGTACTGGAGAACTGTCCATATGTGG
ACCAAATCAAGATCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCCCACC
TATGGCCGGTGAACTGCCTATTCAAGTACTGCCAGTTGATGACAAAGGAG
CTTGGCCAGGAACCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCCGCCT
GGACGCTGTATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGTGCAC
GCTGGGGTGGTCCAGCAGAACAGCGAGGGGGACGTTGGTATCCTCCCGTA
TCGGACTCGTGGCAGCAGCCGGAGACATCCATCCACGTGCAAATCTCCTC
CTTCCGGGACCACCGATGCCCCAAGTGTACGATGGCGGCTCCTGGCACGA
TTTAGACGAAAATATGGTGCCCGGAGAATCCCAACCATGGACCGGAGAAG
ATGGATGCTCTTTGTCTTGCTCTGTGTGGCCCGCCCGGCGGCTGCGAAGG
AAGGAGACCAGAACCCGATGGACCCGTTTGTACTGGAGAACTGTCCATAT
GTGGACCAAATCAAGATCATGCGCGTGTCGGCCGAAGAGGCCAAGGGCCC
CACCTATGGCCGGTGAACTGCCTATTCAAGTACTGCCAGTTGATGACAAA
GGAGCTTGGCCAGGAACCCAAAAAAGGAAATGCCGTGCCCGGCAAGAGCC
GCCTGGACGCTGTATAATCTTTTCACGAAGGCCAAGTACCCTGACCGCGT
GCACGCTGGGGTGGTCCAGCAGAACAGCGAGGGGGACGTTGGTATCCTCC
CGTATCGGACTCGTGGCAGCAGCCGGAGACATCCATCCACGTGCAAATCT
CCTCCTTCCGGGACCACCGATGCCCCAAGTGTACGATGGCGGCTCCTGGC
ACGATTTAGACGAAAATATGGTGCCCGGAGAATCCCAACCATGGACCGGA
GAAGATGGATGCTCTTTGTCTTGCTCTGTGTGGCCCGCCCGGCGGCTGCG
AAGGAAGGAGACCAGAACCCGATG back to top
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