jgi.p|Nanoce1779_2|574361, mRNA_852 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574361
Unique Name	mRNA_852
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1520
Alignment location	scaffold_2:583935..585832 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574447
Track	FilteredModels2
ProteinId	574361

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:583935..585832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574361	gene_852	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574361	mRNA_852-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_852	CDS_852	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:583935..585832+
coding sequence from alignment at scaffold_2:583935..585832+

mRNA sequence

>mRNA_852 ID=mRNA_852|Name=jgi.p|Nanoce1779_2|574361|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAAA
TGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGAC
TCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTC
CTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCAT
TAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATA
TGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCG
CAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGT
CCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCG
CCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCG
TCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCT
TCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACC
GACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGAC
GAGCATGGAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTTT
CATTGCCGGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCTT
CGTTTAATGCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTCG
TCCTACTCCAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGCA
TTTCAATGGCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTCC
TTCTCCACCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACCT
TTCACCCTCTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGCT
TTGGGCCGTTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACCT
CTTTATCTGTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGCC
TCGATGTGGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATCT
GTTCACCCTGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTGA
TTGCTTTTTCGAAGTGACCAGACGGTGGGTGGACGGGGGAGTACATAAAT
ATGACCATGAATGAACGAGGGAACAAGGTGAATATGTGAAGACCGCTGGA
GGGAGAAGTCACAAGAAAGGAGCGGATGGATGAGTGACAGCTATATATAT
ATATATATGTAAATGTTTTTTAGCACAAAGCAATTTGAAGTAAGAAATAG
ATAGCACCGTCATTTTGAAC

protein sequence of jgi.p|Nanoce1779_2|574361

>mRNA_852-protein ID=mRNA_852-protein|Name=jgi.p|Nanoce1779_2|574361|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MAVSDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAG
LGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISN
MCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLR
ATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMH
RLDARGGGAAGGNGGRDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGS
SFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLAL
LLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLT
SLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLL
IAFSK*

mRNA from alignment at scaffold_2:583935..585832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_852 ID=mRNA_852|Name=jgi.p|Nanoce1779_2|574361|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp|location=Sequence derived from alignment at scaffold_2:583935..585832+ (Nannochloropsis oceanica)
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAAGTAAATATACAAAGT
GGGGATGAGGTAGTAGGCGTTTTGTGTTTGGCTGGCACCCTCAGAACTGC
CTTCAGCCGGCTGAACACTGGAAATATCATCACAGCGCTAATCCAAGGAG
ACGAAGCAGGGGCGGCACAATTCAAGCCCGCCCTTTCCCTCTCTCCTCTT
CCATGACCATACCCCCACCCTAACCTTCACCCCTTCCTCACACAGTTGCG
AAACCGGAAATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGG
TTGGCTGGACTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACC
CTTAGCTCTCCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAG
TCCCCGCCATTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGC
ATCAGTAATATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGG
GGTGAAGGCGCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAG
CCGTAGCGGTCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAG
TCTCTTCGCGCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTC
GTCTTCATCGTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGA
GCCCGTCGCTTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGG
GGAATGCACCGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGG
AGGGCGGGACGAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCT
TCCCTTCTGTTGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTT
GCTTTTCCTTTTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACC
TAATACCATTTCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTC
TCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCT
CTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACAT
CATGGACCATGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACC
TGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACA
TCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTG
CAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCC
TCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCT
TGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGAT
AATCACTTCGACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGT
TCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTT
GGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGACCAGA
CGGTGGGTGGACGGGGGAGTACATAAATATGACCATGAATGAACGAGGGA
ACAAGGTGAATATGTGAAGACCGCTGGAGGGAGAAGTCACAAGAAAGGAG
CGGATGGATGAGTGACAGCTATATATATATATATATGTAAATGTTTTTTA
GCACAAAGCAATTTGAAGTAAGAAATAGATAGCACCGTCATTTTGAAC

Coding sequence (CDS) from alignment at scaffold_2:583935..585832+

>mRNA_852 ID=mRNA_852|Name=jgi.p|Nanoce1779_2|574361|organism=Nannochloropsis oceanica|type=CDS|length=3654bp|location=Sequence derived from alignment at scaffold_2:583935..585832+ (Nannochloropsis oceanica)
ATGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGC
CCTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAA
ATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGA
CTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCT
CCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCA
TTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAAT
ATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGC
GCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGG
TCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGC
GCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATC
GTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGC
TTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCAC
CGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGA
CGAGCATGGAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTT
TCATTGCCGGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCT
TCGTTTAATGCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTC
GTCCTACTCCAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGC
ATTTCAATGGCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTC
CTTCTCCACCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACC
TTTCACCCTCTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGC
TTTGGGCCGTTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACC
TCTTTATCTGTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGC
CTCGATGTGGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATC
TGTTCACCCTGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTG
ATTGCTTTTTCGAAGTGAATGGCGGTCAGCGACACCGCCATCGGGTACCT
GGCCATGCTCGTAGCGGCCCTGGGCTTCGGCTCCAATTTTCTGCCCGTCA
AAAATTGCGAAACCGGAAATGGTATTGCATTCCAGTTCTTCTTCTGTTGG
GCCGTCTGGTTGGCTGGACTCGGAGTGGGGGCCCATCGTGGCTTCCCTTC
CACACCACCCTTAGCTCTCCTTGGCGGTGCTTTGTGGTGTACAGGCAACC
TCCTGTCAGTCCCCGCCATTAAGCTCATGGGCTTAAGCCTCTCCCTCCTC
ATCTGGGGCATCAGTAATATGTGCGTGGGCTGGGCCTCGAGTACCTTTGG
GATCTTGGGGGTGAAGGCGCAGCATGTTGCCAACCCTGCCTTAAATTATA
GTGGAGCAGCCGTAGCGGTCCTGGCGCTGTTAGCCTACCTATTTGTTAAA
CCCACGCAGTCTCTTCGCGCCACAGGGGCACCTTTGTCCTCCTCCTCCTC
CTCGTCGTCGTCTTCATCGTCCAAGCAGGGGTCAAATAGGATGTACGCTG
GGAGAATGAGCCCGTCGCTTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAG
GAGGAGGGGGGAATGCACCGACTGGACGCAAGGGGAGGAGGAGCAGCTGG
AGGCAACGGAGGGCGGGACGAGCATGGAGCTGACGTCTTTCTCCCTTCCC
TCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCTCTCACCGCC
GGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACATCATGGACCA
TGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACCTGGAAATGC
TCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACATCTTCCACC
TACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTGCAAGGAAAA
AGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCCTCCTCCCGG
CGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCTTGGTTTGTG
GCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGATAATCACTTC
GACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGTTCGGGGAGA
TAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTTGGATTAACT
GTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGAATGGCGGTCAGCGA
CACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCCCTGGGCTTCGGCT
CCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAAATGGTATTGCATTC
CAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGACTCGGAGTGGGGGC
CCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTCCTTGGCGGTGCTT
TGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCATTAAGCTCATGGGC
TTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATATGTGCGTGGGCTG
GGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCGCAGCATGTTGCCA
ACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGTCCTGGCGCTGTTA
GCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCGCCACAGGGGCACC
TTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCGTCCAAGCAGGGGT
CAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCTTCGAAGTGGTCTG
CTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACCGACTGGACGCAAG
GGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGACGAGCATGGAGCTG
ACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCGGTGTT
GTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAATGCTAG
CTACTACATCATGGACCATGCCTACATCCCGTCCTCGTCCTACTCCAAGT
ACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATGGCATT
TTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCACCATCT
GTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCTCTATC
CCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCG
ATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCTGTGAC
TTTTCCGATAATCACTTCGACACCGGGGCTGGTGGCCTCGATGTGGGGGG
TGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCCTGGCC
GGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTTTCGAA
GTGA

Synonyms

Publications