jgi.p|Nanoce1779_2|602941, mRNA_8518 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602941
Unique NamemRNA_8518
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1435
Alignment locationscaffold_26:104956..106763 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603027
TrackFilteredModels2
ProteinId602941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:104956..106763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602941gene_8518Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602941mRNA_8518-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8518CDS_8518Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8518 ID=mRNA_8518|Name=jgi.p|Nanoce1779_2|602941|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
CAGATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTGCACGA
CGCGGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGAG
ACCCCGTTCTGACATGTGACGGGCACAGCTACGAGCGTGCCTCAATCGAG
GCCTGGCTGACACGGGGCCATCGCACTTCACCGATGACGGGTCTAGTGCT
ACCCTCCCGGAAGCTCTGGCCCAACCTGGCCCTCAAGCACTTGGCCTGCG
CCCTGCATCCACGCAGCGTCGCCGAGGAGGAGGAGGAGAAGGCTATGGAG
AAGGCGCGCCGGGAAAACGCGCATCGAAAACAAAGGCGTCGAGAGCAGCG
GGATGCGGTGGCTTCAGGGCTCGCAAATTCGACCCTGACTTCGGGCACCA
GCAGCGAAGATGAAGATGTGGATGATGAGGAGGAGGACGACAGTAGCAGT
GACTCCGATTCGGACGAGGAGGCGGATGAGGCGGGGGGGGCACTTCGAGT
CATGAGCGTTATGCCTGCCCGATACCGCCCAAGTCGATCAACATGATGGC
CTGCAGTCAACCTGGTCTTAGCCGGCGGCGTCTAAGGGAGGGAAGTACCG
GAGGGGCCTGTGTGGTAGGGGTTGAGAAATGCAGTCTTCGACATTCAGGC
ACAAAGCCTATATCAAATGCAACAAGTAGAAAATTCGTGATCGACTTCAA
CCTGGCGCATGCCCAGTTGCTTTTTCTTTATGTTTTCGCTGGCAACGATT
CGGCATTTCGTATCTTTCATATGTGCTTCGGCTTTCCCCTAAGCCCCTTT
TTCTTACACATCCATCTGATGAACTATACGTCCTCCTCCAGCCTCCCCTT
TCCCTCCATCGAAATACCGGTGCGCGGTAACGGCTGAGGAATGAACGGGG
AAATTGGCAAGTGGAGCGGCAAACAGGCCTCCTCTCGGCCCTCCTCCATG
CGGGTGGAGGGAGGCGAGGGCTCTTCTACTGCTGTTGTGGGAGGAGGAGG
AGGGGGAAGAGGAGGGCAAAAAAGAGGAGGAGGTGGCGACCCGCTGGCGC
TTGACAAAAACACCCACCAGGACAGCCACCGCCAGCCACAGAATTGTAAT
GGTCCAGGGGGCAGTCTGAAGAAGAGGGAATTGGAGGGACGAGGGCCAAA
AGTGTGGAGTCGGTCGTGAGAGATCGTTCACAGGGGGGACACGAGGGGGG
CTGGTGGAAGACACAGCATGCTGCCGCGGCACAAAAGACTAGAATTTCCC
ACAGTGATACCAGTGTCTCCCAGTAATCATCCCGCAATTTTACCTTCGCA
CTCCAGCTCTTCCACATGGCCGGAGTGAGTCTGCTATTCTCCTCCAGCTG
TCCTTGCTGCCTCTCCCCCAACAGACGCTGAGCGTGGAAGGGGTCTATGT
CGTCGTCGATACCCTCGCCAGGCCGCTCAAAGGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|602941

>mRNA_8518-protein ID=mRNA_8518-protein|Name=jgi.p|Nanoce1779_2|602941|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MDTTAKAAHPLQPLHDAALEPLLCPISRCIMRDPVLTCDGHSYERASIEA
WLTRGHRTSPMTGLVLPSRKLWPNLALKHLACALHPRSVAEEEEEKAMEK
ARRENAHRKQRRREQRDAVASGLANSTLTSGTSSEDEDVDDEEEDDSSSD
SDSDEEADEAGGALRVMSVMPARYRPSRST*
back to top

mRNA from alignment at scaffold_26:104956..106763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8518 ID=mRNA_8518|Name=jgi.p|Nanoce1779_2|602941|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_26:104956..106763+ (Nannochloropsis oceanica)
CAGATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTGCACGA
CGCGGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGGT
AATTGCCACGATTGACACGTCCATTTTCCTCCCCCCAAGCAAAGACTATT
GTACAACGGGTGAAATGGAGAAATAATAGAGACGGGGACTTCTTCAGGTT
TTATCGCTGGTCAGCTGCGTTGGAGGTGGACAAAAAAGCGACCGAACACT
CCCTAGCAGACTTGCGTCCCCTCATCCTCCAACACACTCTGCTTCGGTCC
CTCATGCGCTGCCTCCTCGAGAGGGCGACCTACTATCTCTTTTCCATGCT
GTACATCAGATCTACCCATTGTATTTTTTCCATAGTATCTCTTTATTCCA
GAGTCTCACAACTTCCCTTTTTCCTCAAAATTTCTATTCTTCTTCCCCCT
CATCTCTCGCTCATCCACAAGAGACCCCGTTCTGACATGTGACGGGCACA
GCTACGAGCGTGCCTCAATCGAGGCCTGGCTGACACGGGGCCATCGCACT
TCACCGATGACGGGTCTAGTGCTACCCTCCCGGAAGCTCTGGCCCAACCT
GGCCCTCAAGCACTTGGCCTGCGCCCTGCATCCACGCAGCGTCGCCGAGG
AGGAGGAGGAGAAGGCTATGGAGAAGGCGCGCCGGGAAAACGCGCATCGA
AAACAAAGGCGTCGAGAGCAGCGGGATGCGGTGGCTTCAGGGCTCGCAAA
TTCGACCCTGACTTCGGGCACCAGCAGCGAAGATGAAGATGTGGATGATG
AGGAGGAGGACGACAGTAGCAGTGACTCCGATTCGGACGAGGAGGCGGAT
GAGGCGGGGGGGGCACTTCGAGTCATGAGCGTTATGCCTGCCCGATACCG
CCCAAGTCGATCAACATGATGGCCTGCAGTCAACCTGGTCTTAGCCGGCG
GCGTCTAAGGGAGGGAAGTACCGGAGGGGCCTGTGTGGTAGGGGTTGAGA
AATGCAGTCTTCGACATTCAGGCACAAAGCCTATATCAAATGCAACAAGT
AGAAAATTCGTGATCGACTTCAACCTGGCGCATGCCCAGTTGCTTTTTCT
TTATGTTTTCGCTGGCAACGATTCGGCATTTCGTATCTTTCATATGTGCT
TCGGCTTTCCCCTAAGCCCCTTTTTCTTACACATCCATCTGATGAACTAT
ACGTCCTCCTCCAGCCTCCCCTTTCCCTCCATCGAAATACCGGTGCGCGG
TAACGGCTGAGGAATGAACGGGGAAATTGGCAAGTGGAGCGGCAAACAGG
CCTCCTCTCGGCCCTCCTCCATGCGGGTGGAGGGAGGCGAGGGCTCTTCT
ACTGCTGTTGTGGGAGGAGGAGGAGGGGGAAGAGGAGGGCAAAAAAGAGG
AGGAGGTGGCGACCCGCTGGCGCTTGACAAAAACACCCACCAGGACAGCC
ACCGCCAGCCACAGAATTGTAATGGTCCAGGGGGCAGTCTGAAGAAGAGG
GAATTGGAGGGACGAGGGCCAAAAGTGTGGAGTCGGTCGTGAGAGATCGT
TCACAGGGGGGACACGAGGGGGGCTGGTGGAAGACACAGCATGCTGCCGC
GGCACAAAAGACTAGAATTTCCCACAGTGATACCAGTGTCTCCCAGTAAT
CATCCCGCAATTTTACCTTCGCACTCCAGCTCTTCCACATGGCCGGAGTG
AGTCTGCTATTCTCCTCCAGCTGTCCTTGCTGCCTCTCCCCCAACAGACG
CTGAGCGTGGAAGGGGTCTATGTCGTCGTCGATACCCTCGCCAGGCCGCT
CAAAGGGC
back to top

Coding sequence (CDS) from alignment at scaffold_26:104956..106763+

>mRNA_8518 ID=mRNA_8518|Name=jgi.p|Nanoce1779_2|602941|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_26:104956..106763+ (Nannochloropsis oceanica)
ATGGATACCACCGCGAAAGCCGCCCATCCACTACAGCCTTTGCACGACGC
GGCGCTTGAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGAGACC
CCGTTCTGACATGTGACGGGCACAGCTACGAGCGTGCCTCAATCGAGGCC
TGGCTGACACGGGGCCATCGCACTTCACCGATGACGGGTCTAGTGCTACC
CTCCCGGAAGCTCTGGCCCAACCTGGCCCTCAAGCACTTGGCCTGCGCCC
TGCATCCACGCAGCGTCGCCGAGGAGGAGGAGGAGAAGGCTATGGAGAAG
GCGCGCCGGGAAAACGCGCATCGAAAACAAAGGCGTCGAGAGCAGCGGGA
TGCGGTGGCTTCAGGGCTCGCAAATTCGACCCTGACTTCGGGCACCAGCA
GCGAAGATGAAGATGTGGATGATGAGGAGGAGGACGACAGTAGCAGTGAC
TCCGATTCGGACGAGGAGGCGGATGAGGCGGGGGGGGCACTTCGAGTCAT
GAGCGTTATGCCTGCCCGATACCGCCCAAGTCGATCAACATGAATGGATA
CCACCGCGAAAGCCGCCCATCCACTACAGCCTTTGCACGACGCGGCGCTT
GAACCACTTCTGTGTCCCATCTCCCGCTGCATTATGAGAGACCCCGTTCT
GACATGTGACGGGCACAGCTACGAGCGTGCCTCAATCGAGGCCTGGCTGA
CACGGGGCCATCGCACTTCACCGATGACGGGTCTAGTGCTACCCTCCCGG
AAGCTCTGGCCCAACCTGGCCCTCAAGCACTTGGCCTGCGCCCTGCATCC
ACGCAGCGTCGCCGAGGAGGAGGAGGAGAAGGCTATGGAGAAGGCGCGCC
GGGAAAACGCGCATCGAAAACAAAGGCGTCGAGAGCAGCGGGATGCGGTG
GCTTCAGGGCTCGCAAATTCGACCCTGACTTCGGGCACCAGCAGCGAAGA
TGAAGATGTGGATGATGAGGAGGAGGACGACAGTAGCAGTGACTCCGATT
CGGACGAGGAGGCGGATGAGGCGGGGGGGGCACTTCGAGTCATGAGCGTT
ATGCCTGCCCGATACCGCCCAAGTCGATCAACATGA
back to top
Synonyms
Publications