jgi.p|Nanoce1779_2|602933, mRNA_8517 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602933
Unique NamemRNA_8517
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length773
Alignment locationscaffold_26:101844..103202 -

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Properties
Property NameValue
TranscriptId603019
TrackFilteredModels2
ProteinId602933
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:101844..103202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602933gene_8517Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602933mRNA_8517-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8517CDS_8517Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8517 ID=mRNA_8517|Name=jgi.p|Nanoce1779_2|602933|organism=Nannochloropsis oceanica|type=mRNA|length=773bp
AGGTCGCCTCGCCTTGCCTGAGTCCTTCCCTCCCAGGGCTCATTTTTACC
TTCCTTCCCGACCCACGCCATGCCATCGCTCGTCTTCAAATTCATCGTGG
TTGGGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTGTAGAA
CACCGATTTAATGAGAAACATGCCATGACGATCGGCGTAGAGTATGGGCT
GAAGCCGGCACAAGTCAAGGGCCGCGACATCCAGATCGAGATTTGGGACA
CGGCCGGGCAAGAGTGCTACATGGCTTTGACACGCTCGTACTACCGGAAT
GCCGACGGCTGTCTGGTCTGCTTCGATTTGACAAATAGAAGCAGTTTCGA
CAGTGTCTCCAAATGGGTTGAACACGCTCGCAGCAACAGCGGTAACCCTT
ACCTCGTGCTCACGCTGGTTGGCAACAAGGCCGACTGCCAGGGGAGACGA
CAAGTGGCGCGGGCGGAGGCGGAGGCCTTGGCAGCCCATCACGGCATGGA
TTACCGAGAAATCACTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCC
ACACCACCGCAGAGCGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGA
GAGGCGGGGGCGGTGGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGT
CCGCCTCCGTTCCACCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACA
TTGTGCTCGCTCCAGGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAA
GGCGGTTGCTGCTAGACAGGGGT
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protein sequence of jgi.p|Nanoce1779_2|602933

>mRNA_8517-protein ID=mRNA_8517-protein|Name=jgi.p|Nanoce1779_2|602933|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPSLVFKFIVVGNTDVGKSSLLLQFVEHRFNEKHAMTIGVEYGLKPAQVK
GRDIQIEIWDTAGQECYMALTRSYYRNADGCLVCFDLTNRSSFDSVSKWV
EHARSNSGNPYLVLTLVGNKADCQGRRQVARAEAEALAAHHGMDYREITA
KDNEAVQGLFHTTAERIFKAVESGPDGEAGAVGSDIVIDGAGRVRLRSTS
SSSASSSTGNIVLAPGKASVNPSSAAEGGCC*
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mRNA from alignment at scaffold_26:101844..103202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8517 ID=mRNA_8517|Name=jgi.p|Nanoce1779_2|602933|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_26:101844..103202- (Nannochloropsis oceanica)
AGGTCGCCTCGCCTTGCCTGAGTCCTTCCCTCCCAGGGCTCATTTTTACC
TTCCTTCCCGACCCACGCCATGCCATGTAAGTGATAGATAGAGGAGCAAT
GGATGACATCAAGCCATACGTTTTTTAAAGTGGCCTCTGGAAAAAACCAA
CGCAACACCTCTGCACCACCAAACGCAGCGCTCGTCTTCAAATTCATCGT
GGTTGGGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTGTAG
AACACCGATTTAATGAGAAACATGCCATGACGGTACGCTTTATTGGAGAG
ATTAGATGTTTAAATAGGGATGCTCTGCGAGAGCTTGTCCTAGACGTATG
TCGTGCTCCATAATTCTGCCTCTTTCGTTCCCTTGCTCTGTCCACCGTTC
AACCATGTCCATCGCTCGGTTCAAAGCCACTTTGTTTTTATATTCCTCAT
CCGTATATTGTAGATCGGCGTAGAGTATGGGCTGAAGCCGGCACAAGTCA
AGGGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCAAGAGTGC
TACATGGCTTTGACACGCTCGTAAGCTAGCATGGCAGGAAGAGGTTTAGT
CTGGGAAGAGGAAGCAGTCGGGCATCCTGAGCTTAGATTCCATGTATTTC
ATGCTTATGGAACCGTTGTATCTTTGCTTGTGTATCGTGCTCGTTGCCCG
TCCCCAGCTACTCATAGGCCCACCCCTCCTCCCCCAACAGGTACTACCGG
AATGCCGACGGCTGTCTGGTCTGCTTCGATTTGACAAATAGAAGCAGTTT
CGACAGTGTCTCCAAATGGGTTGAACACGCTCGCAGCAACAGCGGTAACC
CTTACCTCGTGCTCACGCTGGTTGGCAACAAGGCCGACTGCCAGGGGAGA
CGACAAGTGGCGCGGGCGGAGGCGGAGGCCTTGGCAGCCCATCACGGCAT
GGATTGTAAGTGGGCGATTGAGATGCTTTTGTAATGCTGTTTCACTGATG
CCCTTCCTCCCTCGCTCGCTTTCTGGCGGCCGCACGGTTTTTGGTCAGTG
TCATTCTTAGCCTCCCTCCTTTCCGCTCTTCCTCGCAGACCGAGAAATCA
CTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGCAGAG
CGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGGCGGT
GGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGTTCCA
CCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGCTCCA
GGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCTGCTA
GACAGGGGT
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Coding sequence (CDS) from alignment at scaffold_26:101844..103202-

>mRNA_8517 ID=mRNA_8517|Name=jgi.p|Nanoce1779_2|602933|organism=Nannochloropsis oceanica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_26:101844..103202- (Nannochloropsis oceanica)
ACCGAGAAATCACTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCCAC
ACCACCGCAGAGCGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGA
GGCGGGGGCGGTGGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGTCC
GCCTCCGTTCCACCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACATT
GTGCTCGCTCCAGGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGG
CGGTTGCTGCTAGGTACTACCGGAATGCCGACGGCTGTCTGGTCTGCTTC
GATTTGACAAATAGAAGCAGTTTCGACAGTGTCTCCAAATGGGTTGAACA
CGCTCGCAGCAACAGCGGTAACCCTTACCTCGTGCTCACGCTGGTTGGCA
ACAAGGCCGACTGCCAGGGGAGACGACAAGTGGCGCGGGCGGAGGCGGAG
GCCTTGGCAGCCCATCACGGCATGGATTATCGGCGTAGAGTATGGGCTGA
AGCCGGCACAAGTCAAGGGCCGCGACATCCAGATCGAGATTTGGGACACG
GCCGGGCAAGAGTGCTACATGGCTTTGACACGCTCCGCTCGTCTTCAAAT
TCATCGTGGTTGGGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAG
TTTGTAGAACACCGATTTAATGAGAAACATGCCATGACGATGCCATACCG
AGAAATCACTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCA
CCGCAGAGCGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCG
GGGGCGGTGGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCT
CCGTTCCACCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGC
TCGCTCCAGGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGT
TGCTGCTAGGTACTACCGGAATGCCGACGGCTGTCTGGTCTGCTTCGATT
TGACAAATAGAAGCAGTTTCGACAGTGTCTCCAAATGGGTTGAACACGCT
CGCAGCAACAGCGGTAACCCTTACCTCGTGCTCACGCTGGTTGGCAACAA
GGCCGACTGCCAGGGGAGACGACAAGTGGCGCGGGCGGAGGCGGAGGCCT
TGGCAGCCCATCACGGCATGGATTATCGGCGTAGAGTATGGGCTGAAGCC
GGCACAAGTCAAGGGCCGCGACATCCAGATCGAGATTTGGGACACGGCCG
GGCAAGAGTGCTACATGGCTTTGACACGCTCCGCTCGTCTTCAAATTCAT
CGTGGTTGGGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTG
TAGAACACCGATTTAATGAGAAACATGCCATGACGATGCCATACCGAGAA
ATCACTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGC
AGAGCGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGG
CGGTGGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGT
TCCACCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGC
TCCAGGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCT
GCTAGGTACTACCGGAATGCCGACGGCTGTCTGGTCTGCTTCGATTTGAC
AAATAGAAGCAGTTTCGACAGTGTCTCCAAATGGGTTGAACACGCTCGCA
GCAACAGCGGTAACCCTTACCTCGTGCTCACGCTGGTTGGCAACAAGGCC
GACTGCCAGGGGAGACGACAAGTGGCGCGGGCGGAGGCGGAGGCCTTGGC
AGCCCATCACGGCATGGATTATCGGCGTAGAGTATGGGCTGAAGCCGGCA
CAAGTCAAGGGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCA
AGAGTGCTACATGGCTTTGACACGCTCCGCTCGTCTTCAAATTCATCGTG
GTTGGGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTGTAGA
ACACCGATTTAATGAGAAACATGCCATGACGATGCCATACCGAGAAATCA
CTGCCAAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGCAGAG
CGGATCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGGCGGT
GGGAAGCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGTTCCA
CCTCTTCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGCTCCA
GGAAAGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCTGCTA
GGTACTACCGGAATGCCGACGGCTGTCTGGTCTGCTTCGATTTGACAAAT
AGAAGCAGTTTCGACAGTGTCTCCAAATGGGTTGAACACGCTCGCAGCAA
CAGCGGTAACCCTTACCTCGTGCTCACGCTGGTTGGCAACAAGGCCGACT
GCCAGGGGAGACGACAAGTGGCGCGGGCGGAGGCGGAGGCCTTGGCAGCC
CATCACGGCATGGATTATCGGCGTAGAGTATGGGCTGAAGCCGGCACAAG
TCAAGGGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCAAGAG
TGCTACATGGCTTTGACACGCTCCGCTCGTCTTCAAATTCATCGTGGTTG
GGAACACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTGTAGAACAC
CGATTTAATGAGAAACATGCCATGACGATGCCATACCGAGAAATCACTGC
CAAGGATAATGAGGCCGTGCAGGGGCTCTTCCACACCACCGCAGAGCGGA
TCTTCAAGGCAGTCGAGAGTGGGCCGGATGGAGAGGCGGGGGCGGTGGGA
AGCGATATTGTCATCGACGGAGCCGGTCGAGTCCGCCTCCGTTCCACCTC
TTCCTCTTCCGCTTCCTCTTCCACCGGGAACATTGTGCTCGCTCCAGGAA
AGGCCAGCGTAAATCCAAGCAGTGCCGCAGAAGGCGGTTGCTGCTAGGTA
CTACCGGAATGCCGACGGCTGTCTGGTCTGCTTCGATTTGACAAATAGAA
GCAGTTTCGACAGTGTCTCCAAATGGGTTGAACACGCTCGCAGCAACAGC
GGTAACCCTTACCTCGTGCTCACGCTGGTTGGCAACAAGGCCGACTGCCA
GGGGAGACGACAAGTGGCGCGGGCGGAGGCGGAGGCCTTGGCAGCCCATC
ACGGCATGGATTATCGGCGTAGAGTATGGGCTGAAGCCGGCACAAGTCAA
GGGCCGCGACATCCAGATCGAGATTTGGGACACGGCCGGGCAAGAGTGCT
ACATGGCTTTGACACGCTCCGCTCGTCTTCAAATTCATCGTGGTTGGGAA
CACGGATGTCGGCAAGTCCTCACTCCTCCTTCAGTTTGTAGAACACCGAT
TTAATGAGAAACATGCCATGACGATGCCAT
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Synonyms
Publications