jgi.p|Nanoce1779_2|532782, mRNA_8514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532782
Unique NamemRNA_8514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length789
Alignment locationscaffold_26:89929..91005 -

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Properties
Property NameValue
TranscriptId532868
TrackFilteredModels2
ProteinId532782
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:89929..91005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532782gene_8514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532782mRNA_8514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8514CDS_8514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Nanoce1779_2|532782|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCACGCACGTCCAAAA
GGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTCTCAGTCATCCTCG
TATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTTGGGGGGATTAGAT
TGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCGTGCTGATGGTGAC
CGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTGTATCGGACGTTTC
CCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGGGTTGCAGACCCTG
GCTGTGATCCTCGCCAGCGTTGGCTTGCGGGCGGTCTTCAAGAACCACCA
GGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTCTTGGCTAGGGCTCG
CCGTCTTCATTCTTTTTCTTATCAATTACACCGTCGGAGTGGGCGCCTTC
TTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCATCCTGCCCTACCA
CGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCATCTTCACGGCTCAGA
CAGGCATCGTCGAGAAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTAT
CCTCCGACCGAGGGAGGGGTGCATTACTCCTTGCTTAATGACGGCTGTCG
CCTCGCCAACTGGATGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGGG
CCCTGGCCGTGCTCCCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGGC
AGGGGGTCGAGCCAGGTCCTACTGGAGACAGGGGTGTAG
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protein sequence of jgi.p|Nanoce1779_2|532782

>mRNA_8514-protein ID=mRNA_8514-protein|Name=jgi.p|Nanoce1779_2|532782|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVNYGGKGPKPTTHVQKVALVIAHVCAVVSVILVSRWANGTGEGFLGGLD
WGDKNLVFNYHPVLMVTAFVFSFTEALLVYRTFPFSKRVNKSIHLGLQTL
AVILASVGLRAVFKNHQETNKADLWSLHSWLGLAVFILFLINYTVGVGAF
FFQLAPLPLRASILPYHVLVGITLYLAAIFTAQTGIVEKLALSGKCTAHY
PPTEGGVHYSLLNDGCRLANWMGLVLFLTALAGALAVLPAQHTREGGRGG
RGSSQVLLETGV*
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mRNA from alignment at scaffold_26:89929..91005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Nanoce1779_2|532782|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_26:89929..91005- (Nannochloropsis oceanica)
ATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCACGCACGTCCAAAA
GGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTCTCAGTCATCCTCG
TATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTTGGGGGGATTAGAT
TGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCGTGCTGATGGTGAC
CGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTGTATCGGACGTTTC
CCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGGGTTGCAGACCCTG
GCTGTGATCCTCGCCAGCGTTGGCTTGCGGGTACGTGGCGGGGATAGGCG
GGGCAGAGAGAAAAGGAGGGACGAAAGACGTGCATGGGAGAGAGAGACTG
AGGAAGACAGACTCCTCAACAATTAAATCATTCTCCCACCCCCCATCTCT
TCCTTCCTTCTCCTCTCCCCCCCTCTTGCAGGCGGTCTTCAAGAACCACC
AGGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTCTTGGCTAGGGCTC
GCCGTCTTCATTCTTTTTCTTATCAATTACACCGTCGGAGTGGGCGCCTT
CTTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCATCCTGCCCTACC
ACGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCATCTTCACGGCTCAG
ACAGGTAAGGAGGATTAACGAAGGAAGGAGATATGGCGGATAAGGCCTCA
GGACGACCAAAGCAGTTTAGGTGAGAGGCTGCAAATCTCACTTACGAAAC
CCTGCCGGTTTGGTTGTCTCCCTCCTTTCCCCCTTGCCCAGGCATCGTCG
AGAAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTATCCTCCGACCGAG
GGAGGGGTGCATTACTCCTTGCTTAATGACGGCTGTCGCCTCGCCAACTG
GATGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGGGCCCTGGCCGTGC
TCCCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGGCAGGGGGTCGAGC
CAGGTCCTACTGGAGACAGGGGTGTAG
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Coding sequence (CDS) from alignment at scaffold_26:89929..91005-

>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Nanoce1779_2|532782|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_26:89929..91005- (Nannochloropsis oceanica)
GCATCGTCGAGAAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTATCCT
CCGACCGAGGGAGGGGTGCATTACTCCTTGCTTAATGACGGCTGTCGCCT
CGCCAACTGGATGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGGGCCC
TGGCCGTGCTCCCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGGCAGG
GGGTCGAGCCAGGTCCTACTGGAGACAGGGGTGTAGGCGGTCTTCAAGAA
CCACCAGGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTCTTGGCTAG
GGCTCGCCGTCTTCATTCTTTTTCTTATCAATTACACCGTCGGAGTGGGC
GCCTTCTTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCATCCTGCC
CTACCACGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCATCTTCACGG
CTCAGACAGATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCACGCA
CGTCCAAAAGGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTCTCAG
TCATCCTCGTATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTTGGGG
GGATTAGATTGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCGTGCT
GATGGTGACCGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTGTATC
GGACGTTTCCCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGGGTTG
CAGACCCTGGCTGTGATCCTCGCCAGCGTTGGCTTGCGGGCATCGTCGAG
AAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTATCCTCCGACCGAGGG
AGGGGTGCATTACTCCTTGCTTAATGACGGCTGTCGCCTCGCCAACTGGA
TGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGGGCCCTGGCCGTGCTC
CCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGGCAGGGGGTCGAGCCA
GGTCCTACTGGAGACAGGGGTGTAGGCGGTCTTCAAGAACCACCAGGAAA
CGAATAAGGCTGACCTCTGGTCTCTTCACTCTTGGCTAGGGCTCGCCGTC
TTCATTCTTTTTCTTATCAATTACACCGTCGGAGTGGGCGCCTTCTTCTT
TCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCATCCTGCCCTACCACGTGC
TGGTGGGCATCACGCTCTACCTGGCTGCCATCTTCACGGCTCAGACAGAT
GGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCACGCACGTCCAAAAGG
TGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTCTCAGTCATCCTCGTA
TCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTTGGGGGGATTAGATTG
GGGGGACAAGAATTTGGTCTTTAACTATCACCCCGTGCTGATGGTGACCG
CCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTGTATCGGACGTTTCCC
TTCTCCAAACGGGTCAATAAATCCATCCACCTCGGGTTGCAGACCCTGGC
TGTGATCCTCGCCAGCGTTGGCTTGCGGGCATCGTCGAGAAACTGGCTCT
GTCGGGCAAGTGCACCGCCCACTATCCTCCGACCGAGGGAGGGGTGCATT
ACTCCTTGCTTAATGACGGCTGTCGCCTCGCCAACTGGATGGGGCTTGTC
CTCTTCCTGACTGCCCTCGCCGGGGCCCTGGCCGTGCTCCCTGCGCAGCA
TACGCGAGAGGGAGGACGGGGAGGCAGGGGGTCGAGCCAGGTCCTACTGG
AGACAGGGGTGTAGGCGGTCTTCAAGAACCACCAGGAAACGAATAAGGCT
GACCTCTGGTCTCTTCACTCTTGGCTAGGGCTCGCCGTCTTCATTCTTTT
TCTTATCAATTACACCGTCGGAGTGGGCGCCTTCTTCTTTCAGCTGGCCC
CCCTGCCTCTGCGTGCCTCCATCCTGCCCTACCACGTGCTGGTGGGCATC
ACGCTCTACCTGGCTGCCATCTTCACGGCTCAGACAGATGGTAAACTACG
GGGGAAAAGGCCCGAAGCCCACCACGCACGTCCAAAAGGTGGCCCTGGTG
ATCGCACATGTCTGCGCTGTGGTCTCAGTCATCCTCGTATCGCGATGGGC
TAATGGGACGGGGGAAGGCTTCTTGGGGGGATTAGATTGGGGGGACAAGA
ATTTGGTCTTTAACTATCACCCCGTGCTGATGGTGACCGCCTTCGTTTTC
TCCTTTACGGAGGCTCTGCTGGTGTATCGGACGTTTCCCTTCTCCAAACG
GGTCAATAAATCCATCCACCTCGGGTTGCAGACCCTGGCTGTGATCCTCG
CCAGCGTTGGCTTGCGG
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Synonyms
Publications