jgi.p|Nanoce1779_2|641918, mRNA_8513 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641918
Unique NamemRNA_8513
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1002
Alignment locationscaffold_26:88064..89065 +

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Properties
Property NameValue
TranscriptId642004
TrackFilteredModels2
ProteinId641918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:88064..89065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641918gene_8513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641918mRNA_8513-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8513CDS_8513Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8513 ID=mRNA_8513|Name=jgi.p|Nanoce1779_2|641918|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGAGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCG
GGAAACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAAT
TGATGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAA
GAGGAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCC
TTACCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGC
GGAAGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGAT
GCTCGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAG
GGGGAGTACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAA
ACTGGAGGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGT
GGAGGAGAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGT
AA
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protein sequence of jgi.p|Nanoce1779_2|641918

>mRNA_8513-protein ID=mRNA_8513-protein|Name=jgi.p|Nanoce1779_2|641918|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MTSTSTSTSGEQDTPPASQGGRQTLSVLNQARVAALLRDQERDRRVAERK
RAPIDLSLLFTKTAQDAPRIGEWDSPASSCSFPSTRHGGSSESSVGEGKG
VLTTENWPEIAVLSRVCKSMSSTMMWDATSSTSPSSAMRGGEEENRGGGG
GGGGGGGGGGSPASGRRETDKSFSSLLLSSGEKLMIEGKGGHFYPYSGEE
EEEREGEGGATQPQLPPYPVAHYTRTPHTVLIKRKASICPSFTRFQQEAD
ARLARASMREHQLLGRGGGGGGGRGGDGGGELKGGVRLMRPFVRAESEAE
TGGKKADDGGTSAMEEVEEKGKGGCVGMEDDEE*
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mRNA from alignment at scaffold_26:88064..89065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8513 ID=mRNA_8513|Name=jgi.p|Nanoce1779_2|641918|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at scaffold_26:88064..89065+ (Nannochloropsis oceanica)
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGAGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCG
GGAAACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAAT
TGATGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAA
GAGGAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCC
TTACCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGC
GGAAGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGAT
GCTCGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAG
GGGGAGTACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAA
ACTGGAGGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGT
GGAGGAGAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGT
AA
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Coding sequence (CDS) from alignment at scaffold_26:88064..89065+

>mRNA_8513 ID=mRNA_8513|Name=jgi.p|Nanoce1779_2|641918|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_26:88064..89065+ (Nannochloropsis oceanica)
ATGACATCTACCAGCACCAGCACCAGCGGCGAACAAGACACCCCTCCTGC
TTCCCAGGGCGGCCGTCAAACCCTGTCCGTCCTCAACCAAGCCCGTGTGG
CCGCCCTCCTACGAGACCAAGAACGGGACCGCCGGGTGGCCGAGCGGAAG
CGGGCACCAATCGACTTATCGCTCCTTTTTACTAAGACTGCGCAGGACGC
GCCGCGTATCGGAGAGTGGGACAGCCCCGCCTCTTCGTGCTCCTTCCCGT
CCACGCGACACGGTGGCAGCAGTGAGAGTAGCGTGGGAGAAGGAAAGGGG
GTGCTGACAACGGAGAACTGGCCGGAAATCGCAGTACTATCACGCGTTTG
TAAGAGTATGTCTTCAACAATGATGTGGGACGCGACCTCCTCCACTTCAC
CATCCTCCGCCATGAGAGGAGGAGAAGAAGAAAATAGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGTCCTGCATCAGGGCGGCG
GGAAACCGACAAGTCGTTTTCCTCCCTTTTGCTTTCTTCTGGAGAGAAAT
TGATGATTGAGGGGAAAGGCGGACACTTCTACCCATACAGTGGGGAGGAA
GAGGAGGAGCGGGAGGGGGAAGGAGGTGCAACGCAGCCGCAGCTTCCTCC
TTACCCCGTGGCCCACTACACCCGCACGCCGCACACCGTCCTCATCAAGC
GGAAGGCCTCCATTTGCCCGTCCTTCACTCGCTTCCAACAGGAAGCCGAT
GCTCGCCTGGCCAGGGCTAGCATGCGGGAGCATCAGCTGCTCGGGCGAGG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGACGGAGGAGGAGAGTTAAAAG
GGGGAGTACGGTTGATGCGTCCCTTTGTGAGAGCTGAGTCTGAGGCCGAA
ACTGGAGGGAAGAAAGCTGATGACGGGGGGACGAGTGCCATGGAGGAGGT
GGAGGAGAAGGGAAAGGGAGGGTGCGTGGGAATGGAGGATGACGAGGAGT
AA
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Synonyms
Publications