jgi.p|Nanoce1779_2|602898, mRNA_8511 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602898
Unique NamemRNA_8511
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length747
Alignment locationscaffold_26:82668..83653 +

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Properties
Property NameValue
TranscriptId602984
TrackFilteredModels2
ProteinId602898
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:82668..83653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602898gene_8511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602898mRNA_8511-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8511CDS_8511Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8511 ID=mRNA_8511|Name=jgi.p|Nanoce1779_2|602898|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGAGGAGGAGGAGGAGGAGGAGGATCGCGACGGTAGCGATGGCGGGTTT
GAGGACGTCGAGAACGGCCAGAGCGGTGACCACGATGGCGGTTTCGCGGC
AGCTGGAGCTGGAACGAAGTCCTCTCCTGGCGTCTGCCCTGCCATGGAAC
TGGACGCGACCTCGGGCCAACGCAAGGGCACCCCGATGCCCAACAAGAAG
AAGACCAAGAGTTGCACCCCTTCCTCTCCCTCGGTCTCCTCCCCTGCCGG
TGGCGGCGGGTCGTTTTTGCTGGAAGTCTCTCGCTTTAACGGCGACGGGA
CCCGCTCCACCTCCACACCCATCCGTCGGTCCAGTCGCATCCTCCTCGGC
GGTCATGGGAAAGACCAGCCCACGCCCTCCCCCCTCCGTCGGGACATGGA
GCGCCTCTTGTCGCTGGCGAGCAACAGCGCGGTGTGGGGCCTGGGGAATG
AATGTTAGATAGGCAGATAGACAGTGGCAGCAGCAGCAGCAGTGGTGGAG
GTAAGGGCAGGGTGTTGATGCGTCTTGCGTCGGGACATGGGGCGGCAGAC
ACAGGGAAACAGGAGACAGAGGGAAACAGAGGAGGCAGAGGGAAACAGAG
GAGGCAGAGAGAGACAAAGCAATGTCAGGGGCTGGGCTGAATGCTGGGAA
AGGAGCGCTGGGAGTGGTCATAGAGGAGGGAGGGAGGGAGGGAGGATGAG
GAAGAGAAATCGGAAGCGTTGAAGTCCGCGTTGGAGAGGGTGCGGTG
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protein sequence of jgi.p|Nanoce1779_2|602898

>mRNA_8511-protein ID=mRNA_8511-protein|Name=jgi.p|Nanoce1779_2|602898|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRRRRRRRIATVAMAGLRTSRTARAVTTMAVSRQLELERSPLLASALPWN
WTRPRANARAPRCPTRRRPRVAPLPLPRSPPLPVAAGRFCWKSLALTATG
PAPPPHPSVGPVASSSAVMGKTSPRPPPSVGTWSASCRWRATARCGAWGM
NVR*
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mRNA from alignment at scaffold_26:82668..83653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8511 ID=mRNA_8511|Name=jgi.p|Nanoce1779_2|602898|organism=Nannochloropsis oceanica|type=mRNA|length=986bp|location=Sequence derived from alignment at scaffold_26:82668..83653+ (Nannochloropsis oceanica)
ATGAGGAGGAGGAGGAGGAGGAGGATCGCGACGGTAGCGATGGCGGGTTT
GAGGACGTCGAGAACGGCCAGAGCGGTGACCACGATGGCGGTTTCGCGGC
AGCTGGAGCTGGAACGAAGGCAAGTCTCGGAGAGATGGATCTTTATCTCA
CACCGAGTTATCAACCGGTCTACTCGGCCCTGTGGCTGCATACATACACA
TGCATTTATTCACCTCTTCCCCCTTACCCCCCCCTCCCTTCTCTCCCTCG
GCAGTCCTCTCCTGGCGTCTGCCCTGCCATGGAACTGGACGCGACCTCGG
GCCAACGCAAGGGCACCCCGATGCCCAACAAGAAGAAGACCAAGAGTTGC
ACCCCTTCCTCTCCCTCGGTCTCCTCCCCTGCCGGTGGCGGCGGGTCGTT
TTTGCTGGAAGTCTCTCGCTTTAACGGCGACGGGACCCGCTCCACCTCCA
CACCCATCCGTCGGTATGTTCCCCCTTCGCTCCCTCCTTCCCTAAGCCCC
CGCTTCCATGTAATTGAACCTGTCCCTCTTTCCCTTCCTCCCCTGCTCCT
TCCCTCCCTCTTATCAGGTCCAGTCGCATCCTCCTCGGCGGTCATGGGAA
AGACCAGCCCACGCCCTCCCCCCTCCGTCGGGACATGGAGCGCCTCTTGT
CGCTGGCGAGCAACAGCGCGGTGTGGGGCCTGGGGAATGAATGTTAGATA
GGCAGATAGACAGTGGCAGCAGCAGCAGCAGTGGTGGAGGTAAGGGCAGG
GTGTTGATGCGTCTTGCGTCGGGACATGGGGCGGCAGACACAGGGAAACA
GGAGACAGAGGGAAACAGAGGAGGCAGAGGGAAACAGAGGAGGCAGAGAG
AGACAAAGCAATGTCAGGGGCTGGGCTGAATGCTGGGAAAGGAGCGCTGG
GAGTGGTCATAGAGGAGGGAGGGAGGGAGGGAGGATGAGGAAGAGAAATC
GGAAGCGTTGAAGTCCGCGTTGGAGAGGGTGCGGTG
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Coding sequence (CDS) from alignment at scaffold_26:82668..83653+

>mRNA_8511 ID=mRNA_8511|Name=jgi.p|Nanoce1779_2|602898|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_26:82668..83653+ (Nannochloropsis oceanica)
ATGAGGAGGAGGAGGAGGAGGAGGATCGCGACGGTAGCGATGGCGGGTTT
GAGGACGTCGAGAACGGCCAGAGCGGTGACCACGATGGCGGTTTCGCGGC
AGCTGGAGCTGGAACGAAGTCCTCTCCTGGCGTCTGCCCTGCCATGGAAC
TGGACGCGACCTCGGGCCAACGCAAGGGCACCCCGATGCCCAACAAGAAG
AAGACCAAGAGTTGCACCCCTTCCTCTCCCTCGGTCTCCTCCCCTGCCGG
TGGCGGCGGGTCGTTTTTGCTGGAAGTCTCTCGCTTTAACGGCGACGGGA
CCCGCTCCACCTCCACACCCATCCGTCGGTCCAGTCGCATCCTCCTCGGC
GGTCATGGGAAAGACCAGCCCACGCCCTCCCCCCTCCGTCGGGACATGGA
GCGCCTCTTGTCGCTGGCGAGCAACAGCGCGGTGTGGGGCCTGGGGAATG
AATGTTAGATAGATGAGGAGGAGGAGGAGGAGGAGGATCGCGACGGTAGC
GATGGCGGGTTTGAGGACGTCGAGAACGGCCAGAGCGGTGACCACGATGG
CGGTTTCGCGGCAGCTGGAGCTGGAACGAAGTCCTCTCCTGGCGTCTGCC
CTGCCATGGAACTGGACGCGACCTCGGGCCAACGCAAGGGCACCCCGATG
CCCAACAAGAAGAAGACCAAGAGTTGCACCCCTTCCTCTCCCTCGGTCTC
CTCCCCTGCCGGTGGCGGCGGGTCGTTTTTGCTGGAAGTCTCTCGCTTTA
ACGGCGACGGGACCCGCTCCACCTCCACACCCATCCGTCGGTCCAGTCGC
ATCCTCCTCGGCGGTCATGGGAAAGACCAGCCCACGCCCTCCCCCCTCCG
TCGGGACATGGAGCGCCTCTTGTCGCTGGCGAGCAACAGCGCGGTGTGGG
GCCTGGGGAATGAATGTTAGATAGATGAGGAGGAGGAGGAGGAGGAGGAT
CGCGACGGTAGCGATGGCGGGTTTGAGGACGTCGAGAACGGCCAGAGCGG
TGACCACGATGGCGGTTTCGCGGCAGCTGGAGCTGGAACGAAGTCCTCTC
CTGGCGTCTGCCCTGCCATGGAACTGGACGCGACCTCGGGCCAACGCAAG
GGCACCCCGATGCCCAACAAGAAGAAGACCAAGAGTTGCACCCCTTCCTC
TCCCTCGGTCTCCTCCCCTGCCGGTGGCGGCGGGTCGTTTTTGCTGGAAG
TCTCTCGCTTTAACGGCGACGGGACCCGCTCCACCTCCACACCCATCCGT
CGGTCCAGTCGCATCCTCCTCGGCGGTCATGGGAAAGACCAGCCCACGCC
CTCCCCCCTCCGTCGGGACATGGAGCGCCTCTTGTCGCTGGCGAGCAACA
GCGCGGTGTGGGGCCTGGGGAATGAATGTTAGATAG
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Synonyms
Publications