jgi.p|Nanoce1779_2|143668, mRNA_851 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|143668
Unique Name	mRNA_851
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1404
Alignment location	scaffold_2:581839..583242 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	143754
Track	FilteredModels2
ProteinId	143668

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:581839..583242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|143668	gene_851	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|143668	mRNA_851-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_851	CDS_851	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:581839..583242+
coding sequence from alignment at scaffold_2:581839..583242+

mRNA sequence

>mRNA_851 ID=mRNA_851|Name=jgi.p|Nanoce1779_2|143668|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
GCTTCAGCTTTGGTCTCTGACCCCGTAATCAATCATCTGCTAGCACGTAG
TCTGACTCATGAATATGATAGGCGAGGGGATCGCCTGGCTCACAGGAAAC
AAAGAGAAAGTGTGGACATATGGCAAGTCAAAAGCAACGATGGGCCCGAC
CGTCCTCTACTAGAAGTCCGCGAAGCCCCGCCGAAGGACATGCCCCAGCC
TTCGTCTGCGCATTTATACCTGGCCACGCCGTCATTAAAGCTCTCCACGC
ACTCTACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTT
TGCCTCGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGAT
GCACCATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGA
CACGGCCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGA
ACTTTTCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTC
ATTGAACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTA
CGGCGCCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACAC
TGCTGCATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTG
ACGCGTGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGG
AGGTGAAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCT
TGAGCTGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGT
GACAGAAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCC
GGTGTGCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCC
ATCCTTTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTAT
GACAGCCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAA
GCAGCAGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGG
AGGAGCAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATA
AAAGAAAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCG
ACAGCAACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTT
CACCGAAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTG
ACTGCGGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATC
GCGCTAATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTT
CTACCCCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA
AACT

protein sequence of jgi.p|Nanoce1779_2|143668

>mRNA_851-protein ID=mRNA_851-protein|Name=jgi.p|Nanoce1779_2|143668|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MASQKQRWARPSSTRSPRSPAEGHAPAFVCAFIPGHAVIKALHALYHRNM
EPLSISTPPSLPRSSAQPPLASPLDLDAPLPLWKSSPSVAPTDDTAGRTC
FCRLLIRLEMNFSTIPNGRDEKDMVPVIEHGDMEFLRLFRFLPYGALTAS
PTAAATASTTLLHGQRLSMLFGPATDLTRAQALLTACLRATTTGGEGAAL
LNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWAY
CKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQEHQ
EEQQEEQQHQEEQQHQEEQQHQEEQQIKEKEAPTSRKKKTKQRRQQQQRH
*

mRNA from alignment at scaffold_2:581839..583242+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_851 ID=mRNA_851|Name=jgi.p|Nanoce1779_2|143668|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_2:581839..583242+ (Nannochloropsis oceanica)
GCTTCAGCTTTGGTCTCTGACCCCGTAATCAATCATCTGCTAGCACGTAG
TCTGACTCATGAATATGATAGGCGAGGGGATCGCCTGGCTCACAGGAAAC
AAAGAGAAAGTGTGGACATATGGCAAGTCAAAAGCAACGATGGGCCCGAC
CGTCCTCTACTAGAAGTCCGCGAAGCCCCGCCGAAGGACATGCCCCAGCC
TTCGTCTGCGCATTTATACCTGGCCACGCCGTCATTAAAGCTCTCCACGC
ACTCTACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTT
TGCCTCGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGAT
GCACCATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGA
CACGGCCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGA
ACTTTTCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTC
ATTGAACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTA
CGGCGCCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACAC
TGCTGCATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTG
ACGCGTGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGG
AGGTGAAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCT
TGAGCTGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGT
GACAGAAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCC
GGTGTGCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCC
ATCCTTTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTAT
GACAGCCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAA
GCAGCAGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGG
AGGAGCAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATA
AAAGAAAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCG
ACAGCAACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTT
CACCGAAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTG
ACTGCGGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATC
GCGCTAATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTT
CTACCCCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA
AACT

Coding sequence (CDS) from alignment at scaffold_2:581839..583242+

>mRNA_851 ID=mRNA_851|Name=jgi.p|Nanoce1779_2|143668|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_2:581839..583242+ (Nannochloropsis oceanica)
ATGGCAAGTCAAAAGCAACGATGGGCCCGACCGTCCTCTACTAGAAGTCC
GCGAAGCCCCGCCGAAGGACATGCCCCAGCCTTCGTCTGCGCATTTATAC
CTGGCCACGCCGTCATTAAAGCTCTCCACGCACTCTACCACAGAAATATG
GAGCCACTATCAATATCGACCCCGCCTTCTTTGCCTCGCAGCTCGGCCCA
GCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACCATTGCCCCTGTGGA
AGTCGTCACCTTCTGTGGCCCCCACGGACGACACGGCCGGCCGAACCTGC
TTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTTTCTACCATCCCAAA
TGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGAACACGGGGACATGG
AGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCGCCTTGACGGCCTCT
CCCACTGCTGCGGCGACTGCCTCGACCACACTGCTGCATGGTCAGCGTCT
ATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCGTGCACAAGCTTTGT
TGACGGCATGCCTGCGAGCCACCACCACAGGAGGTGAAGGCGCTGCCCTC
CTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGCTGTCGGGTTACTTC
GCGAACATTGCTTAGACATGAGGCTATAAGTGACAGAAATAGGCACCCCA
ATATCAATCATTGCCTTTTTCTCATTACTCCGGTGTGCTTCTGGGCCTAC
TGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCTTTTTCACCCACGGC
GCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAGCCTTGGGAAGAGGA
AACGACGACGCCGCCTACGACAACCAACAAAGCAGCAGCAAGAGCATCAG
GAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGCATCAGGA
GGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGAAAAAGAGGCACCAA
CAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGCAACAGCAGCGACAT
TAA

Synonyms

Publications