jgi.p|Nanoce1779_2|602873, mRNA_8506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602873
Unique NamemRNA_8506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length242
Alignment locationscaffold_26:59122..59363 +

Link to JBrowse

Properties
Property NameValue
TranscriptId602959
TrackFilteredModels2
ProteinId602873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:59122..59363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602873gene_8506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602873mRNA_8506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8506CDS_8506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8506 ID=mRNA_8506|Name=jgi.p|Nanoce1779_2|602873|organism=Nannochloropsis oceanica|type=mRNA|length=242bp
CGTGCTCTCCATCTCCCCTGTCTCAGGCCACCTGGCAACATGCCCTGCTG
CCCCCTCTCCCTCCTCACCTCTCCCCTCCATCTCTCTCTCCTCCTCGCTC
TCCTCCTCCTCGTTCACATCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTC
CTCCTCCTCCTCCTCCCGCTCGTCGTCGCCATCCCGCCCTTCCCCCTCTC
CTGCGTCAGCTGTCGGTGAAGACTTCCTCCTCCAGCGGCTAC
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protein sequence of jgi.p|Nanoce1779_2|602873

>mRNA_8506-protein ID=mRNA_8506-protein|Name=jgi.p|Nanoce1779_2|602873|organism=Nannochloropsis oceanica|type=polypeptide|length=60bp
MPCCPLSLLTSPLHLSLLLALLLLVHILLPFLPVPLLLLLLLPLVVAIPP
FPLSCVSCR*
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mRNA from alignment at scaffold_26:59122..59363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8506 ID=mRNA_8506|Name=jgi.p|Nanoce1779_2|602873|organism=Nannochloropsis oceanica|type=mRNA|length=242bp|location=Sequence derived from alignment at scaffold_26:59122..59363+ (Nannochloropsis oceanica)
CGTGCTCTCCATCTCCCCTGTCTCAGGCCACCTGGCAACATGCCCTGCTG
CCCCCTCTCCCTCCTCACCTCTCCCCTCCATCTCTCTCTCCTCCTCGCTC
TCCTCCTCCTCGTTCACATCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTC
CTCCTCCTCCTCCTCCCGCTCGTCGTCGCCATCCCGCCCTTCCCCCTCTC
CTGCGTCAGCTGTCGGTGAAGACTTCCTCCTCCAGCGGCTAC
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Coding sequence (CDS) from alignment at scaffold_26:59122..59363+

>mRNA_8506 ID=mRNA_8506|Name=jgi.p|Nanoce1779_2|602873|organism=Nannochloropsis oceanica|type=CDS|length=180bp|location=Sequence derived from alignment at scaffold_26:59122..59363+ (Nannochloropsis oceanica)
ATGCCCTGCTGCCCCCTCTCCCTCCTCACCTCTCCCCTCCATCTCTCTCT
CCTCCTCGCTCTCCTCCTCCTCGTTCACATCCTCCTTCCCTTTCTCCCTG
TCCCCCTCCTCCTCCTCCTCCTCCTCCCGCTCGTCGTCGCCATCCCGCCC
TTCCCCCTCTCCTGCGTCAGCTGTCGGTGA
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Synonyms
Publications