jgi.p|Nanoce1779_2|206756, mRNA_8505 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|206756
Unique NamemRNA_8505
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length907
Alignment locationscaffold_26:54251..55670 -

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Properties
Property NameValue
TranscriptId206842
TrackFilteredModels2
ProteinId206756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:54251..55670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206756gene_8505Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206756mRNA_8505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8505CDS_8505Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8505 ID=mRNA_8505|Name=jgi.p|Nanoce1779_2|206756|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
CTCCCTTCGGTTCCATCTGCTCACTTTTCCGTCCTCCCTCCCTCCCTTTC
TTCCACGGAACATGCAGAAGCTCTCTTTCACGCCCTCCATCGCTCACCAC
CCTTCCCTTCCTATCTCCCTCCCTCCTCCCCTCCTTTCCCCCCCTTCTCC
CTCAGGACATGCGGCAGGCCCTCCGTCGCCCAGCCCCCGAGGCTCTTGCG
GTTGTGGACCCCCCCTTGAGCGAGGGAAGGGGGGAGGAAGGGAGGGAGGA
GGGGGTGGATCGGACGTCCCTGTCGGGGCTGAAGGAGACGGGCGATGAGG
GGGCGGCGTGTCAGCTGTTGCTCATGCGCTGCCAAGAGCAATCGCTCATG
CAAAATCTGTGGACCCTCAGGGAGCTGGGTAACGAGTTCCCCCTCTTCCT
CGTCGACCAGGGCGGGCGACTGCTCTCGGGGAACCTGGCCTTCTCGGTCC
TGACTCAACGGCCGATGCGAGAGATGGAAGGGCTTACCCTCGAGGCCCTC
CTCGCCCTCCTTCTCCTCCTCATACTCCCCCAACATCACTACGAAGGAAG
GGAAGGAGGGAGGGAGGGAGGGAGGGAAGTCGATTGGGAGAAAGGCTGGG
AGGCGCGGTTGCGAGAGAGCGCAGATCGAGCCAGCCCCAGCCCCTCGCCC
GTCGTCGTCTCCTCCCCCCTCCCCTTCCCTCCTCCCCCCTCCTATTCTCC
CACCGAGGAGGGAGGGCGGGAGAGAGAGCGAGAAGGAGGGCTTGCTCGAG
ACCGGCTAGTGCGGGTGTGGATGGTACGGCTGCCGGCGGCGGACAGCGCC
TATATGGGCTGCCTCTCCCTTGTGTGAGGGAGGGAGGAAGGGAGGGAGGG
AGGGAGGCAGGGAGGAAGGGAGGGTCAATTTTGCTGTGTATGGAGAATAA
TTGTATT
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protein sequence of jgi.p|Nanoce1779_2|206756

>mRNA_8505-protein ID=mRNA_8505-protein|Name=jgi.p|Nanoce1779_2|206756|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MRQALRRPAPEALAVVDPPLSEGRGEEGREEGVDRTSLSGLKETGDEGAA
CQLLLMRCQEQSLMQNLWTLRELGNEFPLFLVDQGGRLLSGNLAFSVLTQ
RPMREMEGLTLEALLALLLLLILPQHHYEGREGGREGGREVDWEKGWEAR
LRESADRASPSPSPVVVSSPLPFPPPPSYSPTEEGGREREREGGLARDRL
VRVWMVRLPAADSAYMGCLSLV*
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mRNA from alignment at scaffold_26:54251..55670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8505 ID=mRNA_8505|Name=jgi.p|Nanoce1779_2|206756|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at scaffold_26:54251..55670- (Nannochloropsis oceanica)
CTCCCTTCGGTTCCATCTGCTCACTTTTCCGTCCTCCCTCCCTCCCTTTC
TTCCACGGAACATGCAGAAGCTCTCTTTCACGCCCTCCATCGCTCACCAC
CCTTCCCTTCCTATCTCCCTCCCTCCTCCCCTCCTTTCCCCCCCTTCTCC
CTCAGGACATGCGGCAGGCCCTCCGTCGCCCAGCCCCCGAGGCTCTTGCG
GTTGTGGACCCCCCCTTGAGCGAGGGAAGGGGGGAGGAAGGGAGGGAGGA
GGGGGTGGATCGGACGTCCCTGTCGGGGCTGAAGGAGACGGGCGATGAGG
GGGCGGCGTGTCAGCTGTTGCTCATGCGGTCGGCGGGGAGGGAGGAAGGG
AGGGAGAAAGGGAGGGGGAAAGGAAGGGAGGGAGGGAGGGAGAAAGGAGG
TGAGGGGAATCTGGCACTGGATATATGCGGCTTAGTCCTCTTTCCCCCCT
TCCCTCCTCCTCCCTCCCTCAGCTGCCAAGAGCAATCGCTCATGCAAAAT
CTGTGGACCCTCAGGGAGCTGGGTAACGAGTTCCCCCTCTTCCTCGTCGA
CCAGGGCGGGCGACTGCTCTCGGGGAACCTGGCCTTCTCGGTACGTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCTCCCTCGTCGCGTCGAC
ATCGGCAGGAAATGACTGCTCTCAGGAAATATCGCTCCTTGAGCATACCT
CTATCTCCCACTCTCCCTCCTCCCCTCCCTCCCTCCCTCATCAAAACTTT
CCTCTTTCTCCCCCGTCCAATTCCTCCCCCTTCCTCCCTTCCTCTCTCCC
TCCCTCTCTCCCTCCCTCCCTTCCTCCCTCTCCCAGGTCCTGACTCAACG
GCCGATGCGAGAGATGGAAGGGCTTACCCTCGAGGCCCTCCTCGCCCTCC
TTCTCCTCCTCATACTCCCCCAACATCACTACGAAGGAAGGGAAGGAGGG
AGGGAGGGAGGGAGGGAAGTCGATTGGGAGAAAGGCTGGGAGGCGCGGTT
GCGAGAGAGCGCAGATCGGTACGTGGTTGCTCTCTCTCCCTCCCTCCTTC
CCCCTCCCTCTCTCCATCCGCCGCACCGCCCGCTGATCCGCCCACACAAA
TTTCTTCTCTCCCTCCCACCCTCCCTCCCGCCCTCCCTCAGAGCCAGCCC
CAGCCCCTCGCCCGTCGTCGTCTCCTCCCCCCTCCCCTTCCCTCCTCCCC
CCTCCTATTCTCCCACCGAGGAGGGAGGGCGGGAGAGAGAGCGAGAAGGA
GGGCTTGCTCGAGACCGGCTAGTGCGGGTGTGGATGGTACGGCTGCCGGC
GGCGGACAGCGCCTATATGGGCTGCCTCTCCCTTGTGTGAGGGAGGGAGG
AAGGGAGGGAGGGAGGGAGGCAGGGAGGAAGGGAGGGTCAATTTTGCTGT
GTATGGAGAATAATTGTATT
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Coding sequence (CDS) from alignment at scaffold_26:54251..55670-

>mRNA_8505 ID=mRNA_8505|Name=jgi.p|Nanoce1779_2|206756|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_26:54251..55670- (Nannochloropsis oceanica)
AGCCAGCCCCAGCCCCTCGCCCGTCGTCGTCTCCTCCCCCCTCCCCTTCC
CTCCTCCCCCCTCCTATTCTCCCACCGAGGAGGGAGGGCGGGAGAGAGAG
CGAGAAGGAGGGCTTGCTCGAGACCGGCTAGTGCGGGTGTGGATGGTACG
GCTGCCGGCGGCGGACAGCGCCTATATGGGCTGCCTCTCCCTTGTGTGAG
TCCTGACTCAACGGCCGATGCGAGAGATGGAAGGGCTTACCCTCGAGGCC
CTCCTCGCCCTCCTTCTCCTCCTCATACTCCCCCAACATCACTACGAAGG
AAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGTCGATTGGGAGAAAGGCT
GGGAGGCGCGGTTGCGAGAGAGCGCAGATCGCTGCCAAGAGCAATCGCTC
ATGCAAAATCTGTGGACCCTCAGGGAGCTGGGTAACGAGTTCCCCCTCTT
CCTCGTCGACCAGGGCGGGCGACTGCTCTCGGGGAACCTGGCCTTCTCGA
TGCGGCAGGCCCTCCGTCGCCCAGCCCCCGAGGCTCTTGCGGTTGTGGAC
CCCCCCTTGAGCGAGGGAAGGGGGGAGGAAGGGAGGGAGGAGGGGGTGGA
TCGGACGTCCCTGTCGGGGCTGAAGGAGACGGGCGATGAGGGGGCGGCGT
GTCAGCTGTTGCTCATGCGAGCCAGCCCCAGCCCCTCGCCCGTCGTCGTC
TCCTCCCCCCTCCCCTTCCCTCCTCCCCCCTCCTATTCTCCCACCGAGGA
GGGAGGGCGGGAGAGAGAGCGAGAAGGAGGGCTTGCTCGAGACCGGCTAG
TGCGGGTGTGGATGGTACGGCTGCCGGCGGCGGACAGCGCCTATATGGGC
TGCCTCTCCCTTGTGTGAGTCCTGACTCAACGGCCGATGCGAGAGATGGA
AGGGCTTACCCTCGAGGCCCTCCTCGCCCTCCTTCTCCTCCTCATACTCC
CCCAACATCACTACGAAGGAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAA
GTCGATTGGGAGAAAGGCTGGGAGGCGCGGTTGCGAGAGAGCGCAGATCG
CTGCCAAGAGCAATCGCTCATGCAAAATCTGTGGACCCTCAGGGAGCTGG
GTAACGAGTTCCCCCTCTTCCTCGTCGACCAGGGCGGGCGACTGCTCTCG
GGGAACCTGGCCTTCTCGATGCGGCAGGCCCTCCGTCGCCCAGCCCCCGA
GGCTCTTGCGGTTGTGGACCCCCCCTTGAGCGAGGGAAGGGGGGAGGAAG
GGAGGGAGGAGGGGGTGGATCGGACGTCCCTGTCGGGGCTGAAGGAGACG
GGCGATGAGGGGGCGGCGTGTCAGCTGTTGCTCATGCGAGCCAGCCCCAG
CCCCTCGCCCGTCGTCGTCTCCTCCCCCCTCCCCTTCCCTCCTCCCCCCT
CCTATTCTCCCACCGAGGAGGGAGGGCGGGAGAGAGAGCGAGAAGGAGGG
CTTGCTCGAGACCGGCTAGTGCGGGTGTGGATGGTACGGCTGCCGGCGGC
GGACAGCGCCTATATGGGCTGCCTCTCCCTTGTGTGAGTCCTGACTCAAC
GGCCGATGCGAGAGATGGAAGGGCTTACCCTCGAGGCCCTCCTCGCCCTC
CTTCTCCTCCTCATACTCCCCCAACATCACTACGAAGGAAGGGAAGGAGG
GAGGGAGGGAGGGAGGGAAGTCGATTGGGAGAAAGGCTGGGAGGCGCGGT
TGCGAGAGAGCGCAGATCGCTGCCAAGAGCAATCGCTCATGCAAAATCTG
TGGACCCTCAGGGAGCTGGGTAACGAGTTCCCCCTCTTCCTCGTCGACCA
GGGCGGGCGACTGCTCTCGGGGAACCTGGCCTTCTCGATGCGGCAGGCCC
TCCGTCGCCCAGCCCCCGAGGCTCTTGCGGTTGTGGACCCCCCCTTGAGC
GAGGGAAGGGGGGAGGAAGGGAGGGAGGAGGGGGTGGATCGGACGTCCCT
GTCGGGGCTGAAGGAGACGGGCGATGAGGGGGCGGCGTGTCAGCTGTTGC
TCATGCGAGCCAGCCCCAGCCCCTCGCCCGTCGTCGTCTCCTCCCCCCTC
CCCTTCCCTCCTCCCCCCTCCTATTCTCCCACCGAGGAGGGAGGGCGGGA
GAGAGAGCGAGAAGGAGGGCTTGCTCGAGACCGGCTAGTGCGGGTGTGGA
TGGTACGGCTGCCGGCGGCGGACAGCGCCTATATGGGCTGCCTCTCCCTT
GTGTGAGTCCTGACTCAACGGCCGATGCGAGAGATGGAAGGGCTTACCCT
CGAGGCCCTCCTCGCCCTCCTTCTCCTCCTCATACTCCCCCAACATCACT
ACGAAGGAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGTCGATTGGGAG
AAAGGCTGGGAGGCGCGGTTGCGAGAGAGCGCAGATCGCTGCCAAGAGCA
ATCGCTCATGCAAAATCTGTGGACCCTCAGGGAGCTGGGTAACGAGTTCC
CCCTCTTCCTCGTCGACCAGGGCGGGCGACTGCTCTCGGGGAACCTGGCC
TTCTCGATGCGGCAGGCCCTCCGTCGCCCAGCCCCCGAGGCTCTTGCGGT
TGTGGACCCCCCCTTGAGCGAGGGAAGGGGGGAGGAAGGGAGGGAGGAGG
GGGTGGATCGGACGTCCCTGTCGGGGCTGAAGGAGACGGGCGATGAGGGG
GCGGCGTGTCAGCTGTTGCTCATGCG
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Synonyms
Publications