jgi.p|Nanoce1779_2|602847, mRNA_8500 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602847
Unique NamemRNA_8500
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length327
Alignment locationscaffold_26:27146..27472 +

Link to JBrowse

Properties
Property NameValue
TranscriptId602933
TrackFilteredModels2
ProteinId602847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:27146..27472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602847gene_8500Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602847mRNA_8500-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8500CDS_8500Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8500 ID=mRNA_8500|Name=jgi.p|Nanoce1779_2|602847|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
GTGACTCAAAAAGCGCTTTCAAAAACGATTACTTAACAGGCCTGCAAAAT
CGCTGGGCGGGAATTAAAGCCAAGGTGAGTTGATGGAAAGTCGGCACTGG
CCTCTATGGATCTGGGCGATGAAATTTTTAGAAAAAATATTTTATATTTT
TTATTAATTAAATTAATTATTTTAATTAATGAATTTACGAATTTAATCAT
CTTATATTTCTATTCTAATGTCCTGTCTACCACTCCAATAGCTGCAATTG
TTTTTATTATTTATTATTATTATTATATATTATTAAATTATGAAAATATT
TTATTTTAATCATCTTATATTTCTATT
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protein sequence of jgi.p|Nanoce1779_2|602847

>mRNA_8500-protein ID=mRNA_8500-protein|Name=jgi.p|Nanoce1779_2|602847|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MDLGDEIFRKNILYFLLIKLIILINEFTNLIILYFYSNVLSTTPIAAIVF
IIYYYYYILLNYENILF*
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mRNA from alignment at scaffold_26:27146..27472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8500 ID=mRNA_8500|Name=jgi.p|Nanoce1779_2|602847|organism=Nannochloropsis oceanica|type=mRNA|length=327bp|location=Sequence derived from alignment at scaffold_26:27146..27472+ (Nannochloropsis oceanica)
GTGACTCAAAAAGCGCTTTCAAAAACGATTACTTAACAGGCCTGCAAAAT
CGCTGGGCGGGAATTAAAGCCAAGGTGAGTTGATGGAAAGTCGGCACTGG
CCTCTATGGATCTGGGCGATGAAATTTTTAGAAAAAATATTTTATATTTT
TTATTAATTAAATTAATTATTTTAATTAATGAATTTACGAATTTAATCAT
CTTATATTTCTATTCTAATGTCCTGTCTACCACTCCAATAGCTGCAATTG
TTTTTATTATTTATTATTATTATTATATATTATTAAATTATGAAAATATT
TTATTTTAATCATCTTATATTTCTATT
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Coding sequence (CDS) from alignment at scaffold_26:27146..27472+

>mRNA_8500 ID=mRNA_8500|Name=jgi.p|Nanoce1779_2|602847|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at scaffold_26:27146..27472+ (Nannochloropsis oceanica)
ATGGATCTGGGCGATGAAATTTTTAGAAAAAATATTTTATATTTTTTATT
AATTAAATTAATTATTTTAATTAATGAATTTACGAATTTAATCATCTTAT
ATTTCTATTCTAATGTCCTGTCTACCACTCCAATAGCTGCAATTGTTTTT
ATTATTTATTATTATTATTATATATTATTAAATTATGAAAATATTTTATT
TTAA
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Synonyms
Publications