jgi.p|Nanoce1779_2|229756, mRNA_85 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|229756
Unique NamemRNA_85
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2102
Alignment locationscaffold_3:228418..230519 -

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Properties
Property NameValue
TranscriptId229842
TrackFilteredModels2
ProteinId229756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:228418..230519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|229756gene_85Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|229756mRNA_85-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_85CDS_85Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_85 ID=mRNA_85|Name=jgi.p|Nanoce1779_2|229756|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp
AAATCCATCGCGTCTCTAATTGCGTAGTTGTCTCATAATTAATCCCTCTG
TACCTACCCCCTGCCATTCTCCTTCGCTTCCCATCCTCCCCAGGGCTCCC
CGCTGCCGGGCCTGACCCTCATCCTGGTTGACAAGCAGCGCCCCACACCC
ACGTTACAACACTACGGCGTGGCGCACCTTCACCTGCAACAATTGGAGAA
GACTCGACCTGTGGGCCCTGAGACCATCTTTCCGATTGGCGCGAGTCTGA
TGAAAAACTTCATGGCTGTTCTAGCTGTTCAGCTTCAAGCCCGGGGCAAG
CTCCGTCTTGATGACCCCATCACCACCTACCTGCCAAATCTACGCCTCAA
ACAAGAGAAAAATGCACCCCCCATCACCCTCCGCCATCTCTTGACACATA
CGAGCGGCATTCGGGAGTATCGACACCTGAAAGATATTATGACAATGGCC
ATGGACTTGGTGCCCTTGCCCCAGGCCTTTAGAAGGTCCAACACGGGATC
GGCAGCAACGACGCTTGCCGATTACTACTGCGGTATGTCAGCCTTACCCA
TTCAAGCAGTGGGTCTTCCCGGAAAACAACATATAAAAAGCCATCACAAT
TACGGCCTTTTGGCCTTGGTCTGTGAGCAAGTCGTCGCATCTAGCAGTAG
CAGCAACAACGGCAGCAACAGCGCAGGGCAATCAGATCCCGACATCTGCT
CCCTTCTTCACCAGCAGATCTTCAGTCCCCTCGGCATGACCCGGACCGAC
ACCCTGCTCCCCAAAAGCGACACCACAAAACTTACCTCCTCCTTTACCTG
GTCCAAAAAAGAAGGCTTCACCCTCGTCCCTCCTCACATGAATTTCGACG
CCTGCAAAGGACGCCCCCATGCAGTGGGTGGCTCTGTGTACTCCACCGCT
CAGGACATGGCTTCGTATTTAAGAGCATTAATAGACCCGGAAAACAGCTC
CAACCACACCTTATCCGAGCAGATGCTGGATGAACTGCTTCGTCCCGTGT
ACCAGAAAGATGTGTTTCTACCCGCCCAAGCGCTGAGTTTTGCGGTGGAA
GAATCCTTTTCACCGGTCGATACAGAGGTAGCATACGTGACATGTGGGCA
AGGGATGTCCTTCGCTGGGTATCAGACAGCCTTGGTATTCTCCCGGGCCA
GAGGCGTGGGCGTAGGGGTGTTGTGTAATGCGGGGAGTGATTCGTATGAG
CTCTCTCAAGTGGCGGCAGAGGCTTTTCAGGAGGTTTCCAGAAGAGCAGA
GGAAGCGAGGGGGGAAGGTCTGGGTTCGGGTGTAGTAGTAGGAGGAGGGG
AGGGAAGGGGGAGTTGTGACGGTGGCAGCACTGGTTCCTCGGTGGAAAGA
CGTTTGCCGTCGTCACCCGCACCAACATTACCACAAGAGCAGCAGCAACC
ACCGCAACTCCATCCCCTCAATCTCCGTTCCCTCCGCTGCCTTGAACAAC
CCCAACACCTGCTCCATTCCTTCGGGATGCACGCTCCAGGCTTCGAGGCT
GCTGTCCTCTGGCCCCTACTTATCGGGGTGTACCAAGCCCCCCTCTCTCA
ACTCTCCGCGCGAGTGCTTTGGACGCTAGGGGGGGAAGTACAAATTTATG
TGCAAGATTCTCGGTTATGCATGCGGGCCCTTTGGGGGCCTTTGAGAACG
AGGTTATTTACAAAGGAGAAAGGTTTGGTACTGTCCCCCGCAAGGGATGG
GCATCCTTTGCATTTTTCGGTGGAGGGGGCGCCGAGGCAGGTGTTGTGTA
CGCCTGTAGGGGGAAGGACGGACATCGTCTTTACGCTGGAGGGGGGGGAG
GGAGGGAGGGAGGGAGGGGAGATGACCGTGGGGTTGGTGACTTTGAGGAA
GACTAAGTGGTATTGGAGCATGCGTGTCTGGATGACAGGCTTTCTAGCCT
ACCAGAGCTTGCAGTTGGTGGGGAGAGGGAAGTTTGTTGAAATCGTGACG
TCATTGCTGGTGGTGGGATGATGGAGGAAGGGAAGCAGGAGTGTCTGGAA
ACTAGAAGGGGGTAAAAAGAGAGAATGCCAGGAATGGTTCCGCGAAATTG
TAAAAAACTGTAAAAACCGAAAGGATGGTGTCCAGAAGGCTGATAACAAT
AC
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protein sequence of jgi.p|Nanoce1779_2|229756

>mRNA_85-protein ID=mRNA_85-protein|Name=jgi.p|Nanoce1779_2|229756|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MKNFMAVLAVQLQARGKLRLDDPITTYLPNLRLKQEKNAPPITLRHLLTH
TSGIREYRHLKDIMTMAMDLVPLPQAFRRSNTGSAATTLADYYCGMSALP
IQAVGLPGKQHIKSHHNYGLLALVCEQVVASSSSSNNGSNSAGQSDPDIC
SLLHQQIFSPLGMTRTDTLLPKSDTTKLTSSFTWSKKEGFTLVPPHMNFD
ACKGRPHAVGGSVYSTAQDMASYLRALIDPENSSNHTLSEQMLDELLRPV
YQKDVFLPAQALSFAVEESFSPVDTEVAYVTCGQGMSFAGYQTALVFSRA
RGVGVGVLCNAGSDSYELSQVAAEAFQEVSRRAEEARGEGLGSGVVVGGG
EGRGSCDGGSTGSSVERRLPSSPAPTLPQEQQQPPQLHPLNLRSLRCLEQ
PQHLLHSFGMHAPGFEAAVLWPLLIGVYQAPLSQLSARVLWTLGGEVQIY
VQDSRLCMRALWGPLRTRLFTKEKGLVLSPARDGHPLHFSVEGAPRQVLC
TPVGGRTDIVFTLEGGEGGREGGEMTVGLVTLRKTKWYWSMRVWMTGFLA
YQSLQLVGRGKFVEIVTSLLVVG*
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mRNA from alignment at scaffold_3:228418..230519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_85 ID=mRNA_85|Name=jgi.p|Nanoce1779_2|229756|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp|location=Sequence derived from alignment at scaffold_3:228418..230519- (Nannochloropsis oceanica)
AAATCCATCGCGTCTCTAATTGCGTAGTTGTCTCATAATTAATCCCTCTG
TACCTACCCCCTGCCATTCTCCTTCGCTTCCCATCCTCCCCAGGGCTCCC
CGCTGCCGGGCCTGACCCTCATCCTGGTTGACAAGCAGCGCCCCACACCC
ACGTTACAACACTACGGCGTGGCGCACCTTCACCTGCAACAATTGGAGAA
GACTCGACCTGTGGGCCCTGAGACCATCTTTCCGATTGGCGCGAGTCTGA
TGAAAAACTTCATGGCTGTTCTAGCTGTTCAGCTTCAAGCCCGGGGCAAG
CTCCGTCTTGATGACCCCATCACCACCTACCTGCCAAATCTACGCCTCAA
ACAAGAGAAAAATGCACCCCCCATCACCCTCCGCCATCTCTTGACACATA
CGAGCGGCATTCGGGAGTATCGACACCTGAAAGATATTATGACAATGGCC
ATGGACTTGGTGCCCTTGCCCCAGGCCTTTAGAAGGTCCAACACGGGATC
GGCAGCAACGACGCTTGCCGATTACTACTGCGGTATGTCAGCCTTACCCA
TTCAAGCAGTGGGTCTTCCCGGAAAACAACATATAAAAAGCCATCACAAT
TACGGCCTTTTGGCCTTGGTCTGTGAGCAAGTCGTCGCATCTAGCAGTAG
CAGCAACAACGGCAGCAACAGCGCAGGGCAATCAGATCCCGACATCTGCT
CCCTTCTTCACCAGCAGATCTTCAGTCCCCTCGGCATGACCCGGACCGAC
ACCCTGCTCCCCAAAAGCGACACCACAAAACTTACCTCCTCCTTTACCTG
GTCCAAAAAAGAAGGCTTCACCCTCGTCCCTCCTCACATGAATTTCGACG
CCTGCAAAGGACGCCCCCATGCAGTGGGTGGCTCTGTGTACTCCACCGCT
CAGGACATGGCTTCGTATTTAAGAGCATTAATAGACCCGGAAAACAGCTC
CAACCACACCTTATCCGAGCAGATGCTGGATGAACTGCTTCGTCCCGTGT
ACCAGAAAGATGTGTTTCTACCCGCCCAAGCGCTGAGTTTTGCGGTGGAA
GAATCCTTTTCACCGGTCGATACAGAGGTAGCATACGTGACATGTGGGCA
AGGGATGTCCTTCGCTGGGTATCAGACAGCCTTGGTATTCTCCCGGGCCA
GAGGCGTGGGCGTAGGGGTGTTGTGTAATGCGGGGAGTGATTCGTATGAG
CTCTCTCAAGTGGCGGCAGAGGCTTTTCAGGAGGTTTCCAGAAGAGCAGA
GGAAGCGAGGGGGGAAGGTCTGGGTTCGGGTGTAGTAGTAGGAGGAGGGG
AGGGAAGGGGGAGTTGTGACGGTGGCAGCACTGGTTCCTCGGTGGAAAGA
CGTTTGCCGTCGTCACCCGCACCAACATTACCACAAGAGCAGCAGCAACC
ACCGCAACTCCATCCCCTCAATCTCCGTTCCCTCCGCTGCCTTGAACAAC
CCCAACACCTGCTCCATTCCTTCGGGATGCACGCTCCAGGCTTCGAGGCT
GCTGTCCTCTGGCCCCTACTTATCGGGGTGTACCAAGCCCCCCTCTCTCA
ACTCTCCGCGCGAGTGCTTTGGACGCTAGGGGGGGAAGTACAAATTTATG
TGCAAGATTCTCGGTTATGCATGCGGGCCCTTTGGGGGCCTTTGAGAACG
AGGTTATTTACAAAGGAGAAAGGTTTGGTACTGTCCCCCGCAAGGGATGG
GCATCCTTTGCATTTTTCGGTGGAGGGGGCGCCGAGGCAGGTGTTGTGTA
CGCCTGTAGGGGGAAGGACGGACATCGTCTTTACGCTGGAGGGGGGGGAG
GGAGGGAGGGAGGGAGGGGAGATGACCGTGGGGTTGGTGACTTTGAGGAA
GACTAAGTGGTATTGGAGCATGCGTGTCTGGATGACAGGCTTTCTAGCCT
ACCAGAGCTTGCAGTTGGTGGGGAGAGGGAAGTTTGTTGAAATCGTGACG
TCATTGCTGGTGGTGGGATGATGGAGGAAGGGAAGCAGGAGTGTCTGGAA
ACTAGAAGGGGGTAAAAAGAGAGAATGCCAGGAATGGTTCCGCGAAATTG
TAAAAAACTGTAAAAACCGAAAGGATGGTGTCCAGAAGGCTGATAACAAT
AC
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Coding sequence (CDS) from alignment at scaffold_3:228418..230519-

>mRNA_85 ID=mRNA_85|Name=jgi.p|Nanoce1779_2|229756|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_3:228418..230519- (Nannochloropsis oceanica)
ATGAAAAACTTCATGGCTGTTCTAGCTGTTCAGCTTCAAGCCCGGGGCAA
GCTCCGTCTTGATGACCCCATCACCACCTACCTGCCAAATCTACGCCTCA
AACAAGAGAAAAATGCACCCCCCATCACCCTCCGCCATCTCTTGACACAT
ACGAGCGGCATTCGGGAGTATCGACACCTGAAAGATATTATGACAATGGC
CATGGACTTGGTGCCCTTGCCCCAGGCCTTTAGAAGGTCCAACACGGGAT
CGGCAGCAACGACGCTTGCCGATTACTACTGCGGTATGTCAGCCTTACCC
ATTCAAGCAGTGGGTCTTCCCGGAAAACAACATATAAAAAGCCATCACAA
TTACGGCCTTTTGGCCTTGGTCTGTGAGCAAGTCGTCGCATCTAGCAGTA
GCAGCAACAACGGCAGCAACAGCGCAGGGCAATCAGATCCCGACATCTGC
TCCCTTCTTCACCAGCAGATCTTCAGTCCCCTCGGCATGACCCGGACCGA
CACCCTGCTCCCCAAAAGCGACACCACAAAACTTACCTCCTCCTTTACCT
GGTCCAAAAAAGAAGGCTTCACCCTCGTCCCTCCTCACATGAATTTCGAC
GCCTGCAAAGGACGCCCCCATGCAGTGGGTGGCTCTGTGTACTCCACCGC
TCAGGACATGGCTTCGTATTTAAGAGCATTAATAGACCCGGAAAACAGCT
CCAACCACACCTTATCCGAGCAGATGCTGGATGAACTGCTTCGTCCCGTG
TACCAGAAAGATGTGTTTCTACCCGCCCAAGCGCTGAGTTTTGCGGTGGA
AGAATCCTTTTCACCGGTCGATACAGAGGTAGCATACGTGACATGTGGGC
AAGGGATGTCCTTCGCTGGGTATCAGACAGCCTTGGTATTCTCCCGGGCC
AGAGGCGTGGGCGTAGGGGTGTTGTGTAATGCGGGGAGTGATTCGTATGA
GCTCTCTCAAGTGGCGGCAGAGGCTTTTCAGGAGGTTTCCAGAAGAGCAG
AGGAAGCGAGGGGGGAAGGTCTGGGTTCGGGTGTAGTAGTAGGAGGAGGG
GAGGGAAGGGGGAGTTGTGACGGTGGCAGCACTGGTTCCTCGGTGGAAAG
ACGTTTGCCGTCGTCACCCGCACCAACATTACCACAAGAGCAGCAGCAAC
CACCGCAACTCCATCCCCTCAATCTCCGTTCCCTCCGCTGCCTTGAACAA
CCCCAACACCTGCTCCATTCCTTCGGGATGCACGCTCCAGGCTTCGAGGC
TGCTGTCCTCTGGCCCCTACTTATCGGGGTGTACCAAGCCCCCCTCTCTC
AACTCTCCGCGCGAGTGCTTTGGACGCTAGGGGGGGAAGTACAAATTTAT
GTGCAAGATTCTCGGTTATGCATGCGGGCCCTTTGGGGGCCTTTGAGAAC
GAGGTTATTTACAAAGGAGAAAGGTTTGGTACTGTCCCCCGCAAGGGATG
GGCATCCTTTGCATTTTTCGGTGGAGGGGGCGCCGAGGCAGGTGTTGTGT
ACGCCTGTAGGGGGAAGGACGGACATCGTCTTTACGCTGGAGGGGGGGGA
GGGAGGGAGGGAGGGAGGGGAGATGACCGTGGGGTTGGTGACTTTGAGGA
AGACTAAGTGGTATTGGAGCATGCGTGTCTGGATGACAGGCTTTCTAGCC
TACCAGAGCTTGCAGTTGGTGGGGAGAGGGAAGTTTGTTGAAATCGTGAC
GTCATTGCTGGTGGTGGGATGA
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Synonyms
Publications