jgi.p|Nanoce1779_2|206161, mRNA_8499 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|206161
Unique NamemRNA_8499
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length613
Alignment locationscaffold_26:26494..27192 +

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Properties
Property NameValue
TranscriptId206247
TrackFilteredModels2
ProteinId206161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:26494..27192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206161gene_8499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206161mRNA_8499-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8499CDS_8499Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8499 ID=mRNA_8499|Name=jgi.p|Nanoce1779_2|206161|organism=Nannochloropsis oceanica|type=mRNA|length=613bp
CTCATCACCATCATTACCACAGGCACTTACCCCCCCCCCCAAGCCTGCGC
CTTAAATCCCTTTTCTCCTTTTCCGACCTGTTGTATCGTAGTCATCGCTC
CTGCTAACCTGGCCATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTT
TCCACCTCCTCCTTTCCACGACCCACCTTGGCCTTAACCACTGTTTCTGC
CTCTATTTATCGCAGCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCA
TTGGCCGTTCCAAAAGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTT
CATTTCGTCTCCTCTCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACAT
CTCCTTGCTTTCTGTCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATG
CCGTAGTGGACTCCTACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTC
GAGCATGCCGCCAAGGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGT
GCGAGGTAGAAAGGGAGGGAAGGGAGGGAAGGTGAGACGAAGGAGAAGGA
GGGGGAAAAGGAAAAAGTGACTCAAAAAGCGCTTTCAAAAACGATTACTT
AACAGGCCTGCAA
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protein sequence of jgi.p|Nanoce1779_2|206161

>mRNA_8499-protein ID=mRNA_8499-protein|Name=jgi.p|Nanoce1779_2|206161|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLPRLCLASSRVSTSSFPRPTLALTTVSASIYRSSSSNSINRSSGIGRSK
RHWPLTSSPSFLHFVSSLQGNKQRQSRYISLLSVLNSHRSFSSRNAVVDS
YSSSGVILDPYFEHAAKEKAAKEISLFSVRGRKGGKGGKVRRRRRRGKRK
K*
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mRNA from alignment at scaffold_26:26494..27192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8499 ID=mRNA_8499|Name=jgi.p|Nanoce1779_2|206161|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at scaffold_26:26494..27192+ (Nannochloropsis oceanica)
CTCATCACCATCATTACCACAGGCACTTACCCCCCCCCCCAAGCCTGCGC
CTTAAATCCCTTTTCTCCTTTTCCGACCTGTTGTATCGTAGTCATCGCTC
CTGCTAACCTGGCCATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTT
TCCACCTCCTCCTTTCCACGACCCACCTTGGCCTTAACCACTGTTTCTGC
CTCTATTTATCGCAGCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCA
TTGGCCGTTCCAAAAGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTT
CATTTCGTCTCCTCTCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACAT
CTCCTTGCTTTCTGTCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATG
CCGTAGTGGTGAGTATTTCTGTCCCTCCCTTCCTCCTCCCTTCCCACCCT
CCCTCCCTCCCTCTAACCTCCTTTCCTTCCCTCCTTCTGCTTAGGACTCC
TACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAA
GGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGTGCGAGGTAGAAAGG
GAGGGAAGGGAGGGAAGGTGAGACGAAGGAGAAGGAGGGGGAAAAGGAAA
AAGTGACTCAAAAAGCGCTTTCAAAAACGATTACTTAACAGGCCTGCAA
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Coding sequence (CDS) from alignment at scaffold_26:26494..27192+

>mRNA_8499 ID=mRNA_8499|Name=jgi.p|Nanoce1779_2|206161|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_26:26494..27192+ (Nannochloropsis oceanica)
ATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTCCTCCTT
TCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTTATCGCA
GCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGTTCCAAA
AGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGTCTCCTC
TCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGCTTTCTG
TCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTGGACTCC
TACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTCGAGCATGCCGCCAA
GGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGTGCGAGGTAGAAAGG
GAGGGAAGGGAGGGAAGGTGAGACGAAGGAGAAGGAGGGGGAAAAGGAAA
AAGTGAATGCTCCCACGTCTCTGCCTGGCCTCCTCCCGTGTTTCCACCTC
CTCCTTTCCACGACCCACCTTGGCCTTAACCACTGTTTCTGCCTCTATTT
ATCGCAGCAGCAGCAGCAACAGTATTAACAGAAGCAGCGGCATTGGCCGT
TCCAAAAGGCATTGGCCTTTGACCTCCTCCCCCTCCTTCCTTCATTTCGT
CTCCTCTCTTCAGGGGAACAAGCAGCGGCAGTCACGGTACATCTCCTTGC
TTTCTGTCTTAAACAGCCATCGTTCCTTCTCCTCTCGAAATGCCGTAGTG
GACTCCTACTCCTCCTCCGGCGTCATCCTCGATCCTTACTTCGAGCATGC
CGCCAAGGAAAAAGCAGCCAAGGAGATCTCTCTGTTCTCAGTGCGAGGTA
GAAAGGGAGGGAAGGGAGGGAAGGTGAGACGAAGGAGAAGGAGGGGGAAA
AGGAAAAAGTGA
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Synonyms
Publications