jgi.p|Nanoce1779_2|205901, mRNA_8494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|205901
Unique NamemRNA_8494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length851
Alignment locationscaffold_26:15367..16854 +

Link to JBrowse

Properties
Property NameValue
TranscriptId205987
TrackFilteredModels2
ProteinId205901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:15367..16854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|205901gene_8494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|205901mRNA_8494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8494CDS_8494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8494 ID=mRNA_8494|Name=jgi.p|Nanoce1779_2|205901|organism=Nannochloropsis oceanica|type=mRNA|length=851bp
GGAGGGAGGGAGGGAGGGAGGGCGAGTAGGTTGTGTTGTGTTCATCGGCA
TTTTTCTCATCTTGTGTGTTGTAATTGATCGAACCTTAACCTCCTCTTGT
GTTCTAATGTTGTCAGCTTATGTCCTTAACCTCGTTTTATGTTCTAATGT
TGTCATCTTATGTGTTGTAATTGATCGAACCTTTCCTTGACAGACACGGA
ATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGAGGACAATCA
AGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAGGTCTTGAGA
AAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTATCACGGCTTT
TTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCTCTCAGAGTA
CATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCCGATTTCTCA
CCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTCTTCTCGTCC
TTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTTCCTCCTCTT
CGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTCGCTCCTGCC
TCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCGACTTTATCC
CTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTCGTCCTCCTC
CCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTTCATCCTCCT
CCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGCATTTGGATC
ATGTGAGGAGGGAGGGAGAGATGGAGGAAGGGAGGGAGTGAGGGAGGGAG
A
back to top

protein sequence of jgi.p|Nanoce1779_2|205901

>mRNA_8494-protein ID=mRNA_8494-protein|Name=jgi.p|Nanoce1779_2|205901|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MDLLLLFQGLEKILRSLNNLEARLYHGFFLYLMPSRDHFVSLSEYIYAMV
LLLLPFLPRFLTFSVRAGYTSLPFVFSSFLLLLCWSGGLYSFLLFEGGRE
EGKEERSSRSCLLIPSILLLFFFSATLSLRLFLSLFPTSSSSSSSPSSSS
SSSSSSFSSSSSSSSRRAGLGALLCIWIM*
back to top

mRNA from alignment at scaffold_26:15367..16854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8494 ID=mRNA_8494|Name=jgi.p|Nanoce1779_2|205901|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at scaffold_26:15367..16854+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGCGAGTAGGTTGTGTTGTGTTCATCGGCA
TTTTTCTCATCTTGTGTGTTGTAATTGATCGAACCTTAACCTCCTCTTGT
GTTCTAATGTTGTCAGCTTATGTCCTTAACCTCGTTTTATGTTCTAATGT
TGTCATCTTATGTGTTGTAATTGATCGAACCTTTCCTTGACAGACACGGA
ATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGAGGACAATCA
AGGTAACCCCTCCATCCCTCCCTCCGTTCCTCTCTCCATCCCTCCGTCTT
ATTATCCTCTTTCTTACCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCC
GTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGT
CCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCC
GTCTCTAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAGGTC
TTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTATCAC
GTACGTGCTCTCCCTCCCTTCCTCCCTCCTCCCCTCCCTCTTTCCCTTTT
TTCAATCCTCTTGGCTCATCTGACCCGCCCTCTCTCCCTCCTTTGTTCCT
TTGTTGAACCCTCCCTCCCTCCCTACCTCCCTCCAGGGCTTTTTTTTGTA
CCTGATGCCGTCCCGCGATCACTTTGTGTCCCTCTCAGAGTACATCTATG
CCATGGTGAGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGGGAGGGGAGGG
AAGAGAATGAACAAAGAAAAATATAAATGCTCATACTTTTACTCGCCCTC
TGTAGGTGCTGCTCCTCCTTCCCTTTCTGCCCCGATTTCTCACCTTCTCC
GTGCGGGCGGTAAGGAAGAAATAATAGTAAATAAAATAATACTAATAAAT
TAAATAACAAGAAGAAATGAAATAAACCTAATTAATAGAATAATAACAAT
AAATAGAAAGGGAGGGAAAGGCCGAATGCCACCGACTGGAATTATTCGTA
CCTACGCTTCTATCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
CTAGGGCTACACCTCCCTCCCTTTCGTCTTCTCGTCCTTTCTCCTCCTCC
TCTGCTGGAGCGGCGGGCTCTACTCCTTCCTCCTCTTCGAAGGCGGGAGG
GAAGAAGGGAAGGAGGAACGGTCGAGTCGCTCCTGCCTCTTAATTCCCTC
CATCCTCCTCCTCTTCTTCTTCTCTGCGACTTTATCCCTTCGCCTCTTCC
TCTCCCTGTTCCCCACCTCTTCTTCGTCGTCCTCCTCCCCCTCCTCGTCC
TCCTCCTCCTCGTCCTCCTCCTTCTCTTCATCCTCCTCCTCTTCCTCCAG
GAGAGCAGGCTTGGGCGCCTTGCTGTGCATTTGGATCATGTGAGGAGGGA
GGGAGAGATGGAGGAAGGGAGGGAGTGAGGGAGGGAGA
back to top

Coding sequence (CDS) from alignment at scaffold_26:15367..16854+

>mRNA_8494 ID=mRNA_8494|Name=jgi.p|Nanoce1779_2|205901|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_26:15367..16854+ (Nannochloropsis oceanica)
ATGGATTTGCTCCTCCTCTTTCAAGGTCTTGAGAAAATTCTCCGATCCCT
CAACAACTTGGAAGCCCGCCTGTATCACGGCTTTTTTTTGTACCTGATGC
CGTCCCGCGATCACTTTGTGTCCCTCTCAGAGTACATCTATGCCATGGTG
CTGCTCCTCCTTCCCTTTCTGCCCCGATTTCTCACCTTCTCCGTGCGGGC
GGGCTACACCTCCCTCCCTTTCGTCTTCTCGTCCTTTCTCCTCCTCCTCT
GCTGGAGCGGCGGGCTCTACTCCTTCCTCCTCTTCGAAGGCGGGAGGGAA
GAAGGGAAGGAGGAACGGTCGAGTCGCTCCTGCCTCTTAATTCCCTCCAT
CCTCCTCCTCTTCTTCTTCTCTGCGACTTTATCCCTTCGCCTCTTCCTCT
CCCTGTTCCCCACCTCTTCTTCGTCGTCCTCCTCCCCCTCCTCGTCCTCC
TCCTCCTCGTCCTCCTCCTTCTCTTCATCCTCCTCCTCTTCCTCCAGGAG
AGCAGGCTTGGGCGCCTTGCTGTGCATTTGGATCATGTGAATGGATTTGC
TCCTCCTCTTTCAAGGTCTTGAGAAAATTCTCCGATCCCTCAACAACTTG
GAAGCCCGCCTGTATCACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGA
TCACTTTGTGTCCCTCTCAGAGTACATCTATGCCATGGTGCTGCTCCTCC
TTCCCTTTCTGCCCCGATTTCTCACCTTCTCCGTGCGGGCGGGCTACACC
TCCCTCCCTTTCGTCTTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGG
CGGGCTCTACTCCTTCCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGG
AGGAACGGTCGAGTCGCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTC
TTCTTCTTCTCTGCGACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCC
CACCTCTTCTTCGTCGTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGT
CCTCCTCCTTCTCTTCATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTG
GGCGCCTTGCTGTGCATTTGGATCATGTGAATGGATTTGCTCCTCCTCTT
TCAAGGTCTTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCC
TGTATCACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTG
TCCCTCTCAGAGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCT
GCCCCGATTTCTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTT
TCGTCTTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTAC
TCCTTCCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTC
GAGTCGCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCT
CTGCGACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCT
TCGTCGTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTT
CTCTTCATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGC
TGTGCATTTGGATCATGTGAATGGATTTGCTCCTCCTCTTTCAAGGTCTT
GAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTATCACGG
CTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCTCTCAG
AGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCCGATTT
CTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTCTTCTC
GTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTTCCTCC
TCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTCGCTCC
TGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCGACTTT
ATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTCGTCCT
CCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTTCATCC
TCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGCATTTG
GATCATGTGA
back to top
Synonyms
Publications