jgi.p|Nanoce1779_2|656310, mRNA_8493 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|656310
Unique NamemRNA_8493
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1049
Alignment locationscaffold_26:9679..11433 -

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Properties
Property NameValue
TranscriptId656396
TrackFilteredModels2
ProteinId656310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:9679..11433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656310gene_8493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656310mRNA_8493-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8493CDS_8493Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8493 ID=mRNA_8493|Name=jgi.p|Nanoce1779_2|656310|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGCCGCGCGGCAACTTCCGCCTTCAG
GCTACACCCAAGCCCGTCTCTGGCACGAAATTGATCACCGAAGTGGGCGC
CAGTCCTCTTTATCGCGCGGATGGCAAGGAGGTGCAATTTAAGGACCTCT
ATCTGCCGCCTAAAGCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCT
CCCAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGG
GTTCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGG
CCTTCAAAGACAAGGGGAAGCAAGAGCGGGTTAAGGCCCTTCTTCCTAGT
TACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGTGCAACA
AGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGAAAGAGG
GGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCACGCCGAT
TGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAAGGAGGAATTTCTTA
GTTCCTGATGCTTGTAGATTTCCTACTTTTATGGTTTCCAACCCGTACAC
GGGATAAGGGAATGAACGCGAGGAAGGGAAAGATAGCGAAGAAGGCATCG
AGAAGAGGGAGAGGAAATACGGCGAATAATGACGTTGCGTGCCCTTAACT
TGCTGTCTTCCGACAGTGAGGGGGCCCGCGCTGAGACTTCCCTGTAACAC
CATTTCTGATTGTCGTTGACCTTTTTCTCTCACTTTTTATTTTTGTGCGG
TCGTTTTCCAGTTCTCAATTATAAGTGGGAACACAATTGAAGGGAGGACG
GAGCAGCTGTGGTACGTACGAAAGGAGACAGAATTTCCCCCCAAAAAAGT
TGGCGTGGAAAGAAAAAGAAAAACCAGAAACAGTCGAAAGACGTGCGCG
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protein sequence of jgi.p|Nanoce1779_2|656310

>mRNA_8493-protein ID=mRNA_8493-protein|Name=jgi.p|Nanoce1779_2|656310|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MARPRSSFPERAATLLLAVIVGLLLREDLVHAAFVKPLGATQPRGNFRLQ
ATPKPVSGTKLITEVGASPLYRADGKEVQFKDLYLPPKAGKLFAETVDFP
PNLLYADPTGAAYQNIGFYKELGRLFFARATQQAFKDKGKQERVKALLPS
YKPGKLIPKDTSLTVQQGGVIVVKYSGKKGEKEGEIVFQHFDEGTGAHAD
WSEVLAAAVAK*
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mRNA from alignment at scaffold_26:9679..11433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8493 ID=mRNA_8493|Name=jgi.p|Nanoce1779_2|656310|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at scaffold_26:9679..11433- (Nannochloropsis oceanica)
ATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCT
CGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCT
TTGTCAAGCCCTTGGGTGCTACCCAGGTCAGTGCCTGATCACAATCATCT
TTCATTCCCCTTTGCTTTCTTCATCTCCGTAGGCTTTTTCCTTGCAATCT
TACGATGCCCCCTCTCATCCGGTTACCCTCCCTTCCCCACACCCACACAG
CCGCGCGGCAACTTCCGCCTTCAGGCTACACCCAAGCCCGTCTCTGGCAC
GAAATTGATCACCGAAGTGGGCGCCAGTCCTCTTTATCGCGCGGATGGCA
AGGAGGTGCAATTTAAGGACCTCTATCTGCCGCCTAAAGGTTCGGAGGGG
AAAGAAGGCGCAAACATTCTGATCTTCCTTCGCCATTTCGGGTAAGGATG
AAGGACGGGAAGGAAACAAAAGCGAAAAGAGTGGTGAAAGGGATATACTT
CTTGGCCTCCCACTTTGCTGAGCTATATCATATGTCTCCCCACCATTGGC
ATTGGCCTGCCTTGCTTACCCTCTTTCCTCACTCACTGATTTCCAGCTGA
CTATTGTGTTGGGAGGCGGCCGTTGACATTAAGAACAACCTGCTGCCTTC
CATCGCCTCCCTCCCTCCCTCCACCTCCTCCTCCCCCTTCTCCTCCCTCC
TCTCCCCTGCTCCTCCGTCCCGCCCTCCCACCCTGGCGGTCATCGGTATT
GGGGACGCCGAAGCCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCTCC
CAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGGGT
TCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGGCC
TTCAAAGACAAGGGGAAGCAAGAGCGGGTAAGTCCGGGGACTGTACACAC
AAAAATATGAAGGGAACGAACAGACTTCGGATTGTTGGGTTTACAAGCGT
TTGTGGGTCCGTAGATTCTTCGTCTGCAGACTGCAGTCTGTAGCCTTTTT
GTATCACGGAGTCTGCACTCGGTTCTTTCGCTGACAAGGTCTATATCTGC
TTACTCTCTGTTTGTCCTGTCTTGTCGTACCACAGGTTAAGGCCCTTCTT
CCTAGTTACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGT
GCAACAAGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGA
AAGAGGGGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCAC
GCCGATTGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAAGGAGGAAT
TTCTTAGTTCCTGATGCTTGTAGATTTCCTACTTTTATGGTTTCCAACCC
GTACACGGGATAAGGGAATGAACGCGAGGAAGGGAAAGATAGCGAAGAAG
GCATCGAGAAGAGGGAGAGGAAATACGGCGAATAATGACGTTGCGTGCCC
TTAACTTGCTGTCTTCCGACAGTGAGGGGGCCCGCGCTGAGACTTCCCTG
TAACACCATTTCTGATTGTCGTTGACCTTTTTCTCTCACTTTTTATTTTT
GTGCGGTCGTTTTCCAGTTCTCAATTATAAGTGGGAACACAATTGAAGGG
AGGACGGAGCAGCTGTGGTACGTACGAAAGGAGACAGAATTTCCCCCCAA
AAAAGTTGGCGTGGAAAGAAAAAGAAAAACCAGAAACAGTCGAAAGACGT
GCGCG
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Coding sequence (CDS) from alignment at scaffold_26:9679..11433-

>mRNA_8493 ID=mRNA_8493|Name=jgi.p|Nanoce1779_2|656310|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_26:9679..11433- (Nannochloropsis oceanica)
GTTAAGGCCCTTCTTCCTAGTTACAAGCCTGGCAAGCTCATCCCTAAGGA
CACGAGTCTCACCGTGCAACAAGGCGGAGTCATCGTCGTCAAGTACAGCG
GGAAGAAGGGCGAGAAAGAGGGGGAGATTGTCTTTCAGCATTTTGATGAG
GGAACGGGGGCGCACGCCGATTGGAGTGAGGTCCTGGCGGCGGCGGTTGC
AAAGTAACCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCTCCCAACCT
CCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGGGTTCTACA
AAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGGCCTTCAAA
GACAAGGGGAAGCAAGAGCGGCCGCGCGGCAACTTCCGCCTTCAGGCTAC
ACCCAAGCCCGTCTCTGGCACGAAATTGATCACCGAAGTGGGCGCCAGTC
CTCTTTATCGCGCGGATGGCAAGGAGGTGCAATTTAAGGACCTCTATCTG
CCGCCTAAAGATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGA
CGCTTTTGCTCGCCGTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTC
CACGCCGCCTTTGTCAAGCCCTTGGGTGCTACCCAGGTTAAGGCCCTTCT
TCCTAGTTACAAGCCTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCG
TGCAACAAGGCGGAGTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAG
AAAGAGGGGGAGATTGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCA
CGCCGATTGGAGTGAGGTCCTGGCGGCGGCGGTTGCAAAGTAACCGGAAA
ACTGTTTGCGGAGACGGTTGACTTCCCTCCCAACCTCCTCTACGCGGATC
CCACGGGCGCCGCGTACCAAAACATCGGGTTCTACAAAGAACTGGGGCGA
TTGTTTTTTGCCAGGGCCACGCAACAGGCCTTCAAAGACAAGGGGAAGCA
AGAGCGGCCGCGCGGCAACTTCCGCCTTCAGGCTACACCCAAGCCCGTCT
CTGGCACGAAATTGATCACCGAAGTGGGCGCCAGTCCTCTTTATCGCGCG
GATGGCAAGGAGGTGCAATTTAAGGACCTCTATCTGCCGCCTAAAGATGG
CGCGTCCGCGTTCCTCTTTTCCCGAAAGAGCGGCGACGCTTTTGCTCGCC
GTCATCGTCGGCCTCTTGCTCAGGGAGGACCTCGTCCACGCCGCCTTTGT
CAAGCCCTTGGGTGCTACCCAGGTTAAGGCCCTTCTTCCTAGTTACAAGC
CTGGCAAGCTCATCCCTAAGGACACGAGTCTCACCGTGCAACAAGGCGGA
GTCATCGTCGTCAAGTACAGCGGGAAGAAGGGCGAGAAAGAGGGGGAGAT
TGTCTTTCAGCATTTTGATGAGGGAACGGGGGCGCACGCCGATTGGAGTG
AGGTCCTGGCGGCGGCGGTTGCAAAGTAACCGGAAAACTGTTTGCGGAGA
CGGTTGACTTCCCTCCCAACCTCCTCTACGCGGATCCCACGGGCGCCGCG
TACCAAAACATCGGGTTCTACAAAGAACTGGGGCGATTGTTTTTTGCCAG
GGCCACGCAACAGGCCTTCAAAGACAAGGGGAAGCAAGAGCGGCCGCGCG
GCAACTTCCGCCTTCAGGCTACACCCAAGCCCGTCTCTGGCACGAAATTG
ATCACCGAAGTGGGCGCCAGTCCTCTTTATCGCGCGGATGGCAAGGAGGT
GCAATTTAAGGACCTCTATCTGCCGCCTAAAGATGGCGCGTCCGCGTTCC
TCTTTTCCCGAAAGAGCGGCGACGCTTTTGCTCGCCGTCATCGTCGGCCT
CTTGCTCAGGGAGGACCTCGTCCACGCCGCCTTTGTCAAGCCCTTGGGTG
CTACCCAGGTTAAGGCCCTTCTTCCTAGTTACAAGCCTGGCAAGCTCATC
CCTAAGGACACGAGTCTCACCGTGCAACAAGGCGGAGTCATCGTCGTCAA
GTACAGCGGGAAGAAGGGCGAGAAAGAGGGGGAGATTGTCTTTCAGCATT
TTGATGAGGGAACGGGGGCGCACGCCGATTGGAGTGAGGTCCTGGCGGCG
GCGGTTGCAAAGTAACCGGAAAACTGTTTGCGGAGACGGTTGACTTCCCT
CCCAACCTCCTCTACGCGGATCCCACGGGCGCCGCGTACCAAAACATCGG
GTTCTACAAAGAACTGGGGCGATTGTTTTTTGCCAGGGCCACGCAACAGG
CCTTCAAAGACAAGGGGAAGCAAGAGCGGCCGCGCGGCAACTTCCGCCTT
CAGGCTACACCCAAGCCCGTCTCTGGCACGAAATTGATCACCGAAGTGGG
CGCCAGTCCTCTTTATCGCGCGGATGGCAAGGAGGTGCAATTTAAGGACC
TCTATCTGCCGCCTAAAGATGGCGCGTCCGCGTTCCTCTTTTCCCGAAAG
AGCGGCGACGCTTTTGCTCGCCGTCATCGTCGGCCTCTTGCTCAGGGAGG
ACCTCGTCCACGCCGCCTTTGTCAAGCCCTTGGGTGCTACCCAG
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Synonyms
Publications