jgi.p|Nanoce1779_2|602806, mRNA_8490 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602806
Unique Name	mRNA_8490
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	747
Alignment location	scaffold_26:3597..5020 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602892
Track	FilteredModels2
ProteinId	602806

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:3597..5020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602806	gene_8490	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602806	mRNA_8490-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8490	CDS_8490	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:3597..5020+
coding sequence from alignment at scaffold_26:3597..5020+

mRNA sequence

>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Nanoce1779_2|602806|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
CGAATTATAAGAAGATGGGGACCCCCTTGCGTTCGGTGATGCAGCAACAC
GTGGATTTCTTCGACCGTGACGGGGACGGGGTCATTACCATGCGGGACAC
CTTTTTCGGGTTTCGCCGCCTGGGCTTCAATTGGGCCTTTTGCCTGTGGG
CAGTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTACCCGGGCTAT
TTCATTGACCCCTTCATGCGCATCTACTCCCGTAACATCCACCGTGGCAA
GCATGGAAGTGACCAGGAGGTATACGATCACGAAGGTCGCTTCATTCCTC
AGCGCTTTGAAGACATTTTTGCCAAGTGGGATCAAGAGGGAAAGGGCGGC
CTTAGCCTCCGTGACTTGTGGTACAAAGGGACGAGGGGAAGGAGAGAGGG
AGAGGAGGAGCAAGGAAAAGACAAAGCCCACAAGAGAAGCGGATTTAGAG
ACATTGTCGAAGTTTCGTGTTCATAGCAAACTGCTCACCTTGCGTCTTAT
CTTTGCTCCCTCCTTCTACCCTTTCCCCTTCCCTCCCCTTTCCTCCCTTT
TCTCCTTTAACCGTTAGGAAAATGACGCAGAGCTCCTTCGAGGTGAATGA
TTTCTTCGGCTGGTTCGCCGGCAAGTTCGAGTGGTTTACCCTCTGGCTTC
TCACTGCTGATGACAAGGGCCTGGTGACCAAAGAGGCCGTGCGGAGTGTT
TATGACGGAAGCTTGTTCTACAAGATGGAGGTAGGGGGGGAGGGGCT

protein sequence of jgi.p|Nanoce1779_2|602806

>mRNA_8490-protein ID=mRNA_8490-protein|Name=jgi.p|Nanoce1779_2|602806|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MGTPLRSVMQQHVDFFDRDGDGVITMRDTFFGFRRLGFNWAFCLWAVFVI
NPAFSIASYPGYFIDPFMRIYSRNIHRGKHGSDQEVYDHEGRFIPQRFED
IFAKWDQEGKGGLSLRDLWYKGTRGRREGEEEQGKDKAHKRSGFRDIVEV
SCS*

mRNA from alignment at scaffold_26:3597..5020+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Nanoce1779_2|602806|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at scaffold_26:3597..5020+ (Nannochloropsis oceanica)
CGAATTATAAGAAGATGGGGACCCCCTTGCGTTCGGTGTGTGAGAATGGG
AGGGAGGATGCCGAGAGATGAAAAATAGGGGAGGGAGGGCGAACTTTGTG
AAGAGGAAGGAAGGGAAAGAGGGAGGGAGGATACTCGTGGGAAAAAAAGG
TATTGCGAGGCCCACGGCTAAAGGAACTCTTATTCTGTTAACCACCAGGT
GATGCAGCAACACGTGGATTTCTTCGACCGTGACGGGGACGGGGTCATTA
CCATGCGGGACACCTTTTTCGGGTACGTTTTTAGGGTTAAGGCTCGATCC
TGCTCCCCCTCTTTCCCTCCTTCCTTCATTCTTCCTCTGGCTCCTTTTGG
AGCCGTCATTTTATCACCAATCGCTATCTCACTCTTCCTTTCAACCTTTC
CCTCGCTCTTTCTTCTCCACAGGTTTCGCCGCCTGGGCTTCAATTGGGCC
TTTTGCCTGTGGGCAGGTACACTTACACCTCGTCCTCCTTCCCTCCCTCA
TCTCTTTCCCCCTCCGTTGCTTTCTCCCACCGCTCATTTTTCTTTTTTGC
TACATACACCTCATCGGTGACCATATCTTAGAATTGCACCTACATCATCA
TCATTAATCGCGTTAATATCTAATCCTCTTTCTCCCCACCCTCCTTCCCC
TTCTTCCTCCCTTTATTACTTCCGATCCCCGTCTTCTCCTCTCAGTCTTC
GTCATTAATCCCGCGTTTTCCATTGCCTCTTACCCGGGCTATTTCATTGA
CCCCTTCATGCGCATCTACTCCCGTAACATCCACCGTGGCAAGCATGGAA
GTGACCAGGAGGTATACGATCACGAAGGTAGGAGGGAGGGCAGGGAGGGG
AGGAGGGGCAGGGAAGAGGGGAGGGAAGATCCGACGCTGGAACCTTCTCT
TTTCACATTATTCTTCTTTTCTAAGGCTCTCTTCTTCTATCCTACCCTTC
CTCTATATATAGGTCGCTTCATTCCTCAGCGCTTTGAAGACATTTTTGCC
AAGTGGGATCAAGAGGGAAAGGGCGGCCTTAGCCTCCGTGACTTGTGGTA
CAAAGGGACGAGGGGAAGGAGAGAGGGAGAGGAGGAGCAAGGAAAAGACA
AAGCCCACAAGAGAAGCGGATTTAGAGACATTGTCGAAGTTTCGTGTTCA
TAGCAAACTGCTCACCTTGCGTCTTATCTTTGCTCCCTCCTTCTACCCTT
TCCCCTTCCCTCCCCTTTCCTCCCTTTTCTCCTTTAACCGTTAGGAAAAT
GACGCAGAGCTCCTTCGAGGTGAATGATTTCTTCGGCTGGTTCGCCGGCA
AGTTCGAGTGGTTTACCCTCTGGCTTCTCACTGCTGATGACAAGGGCCTG
GTGACCAAAGAGGCCGTGCGGAGTGTTTATGACGGAAGCTTGTTCTACAA
GATGGAGGTAGGGGGGGAGGGGCT

Coding sequence (CDS) from alignment at scaffold_26:3597..5020+

>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Nanoce1779_2|602806|organism=Nannochloropsis oceanica|type=CDS|length=2310bp|location=Sequence derived from alignment at scaffold_26:3597..5020+ (Nannochloropsis oceanica)
ATGGGGACCCCCTTGCGTTCGGTGATGCAGCAACACGTGGATTTCTTCGA
CCGTGACGGGGACGGGGTCATTACCATGCGGGACACCTTTTTCGGGTTTC
GCCGCCTGGGCTTCAATTGGGCCTTTTGCCTGTGGGCAGTCTTCGTCATT
AATCCCGCGTTTTCCATTGCCTCTTACCCGGGCTATTTCATTGACCCCTT
CATGCGCATCTACTCCCGTAACATCCACCGTGGCAAGCATGGAAGTGACC
AGGAGGTATACGATCACGAAGGTCGCTTCATTCCTCAGCGCTTTGAAGAC
ATTTTTGCCAAGTGGGATCAAGAGGGAAAGGGCGGCCTTAGCCTCCGTGA
CTTGTGGTACAAAGGGACGAGGGGAAGGAGAGAGGGAGAGGAGGAGCAAG
GAAAAGACAAAGCCCACAAGAGAAGCGGATTTAGAGACATTGTCGAAGTT
TCGTGTTCATAGATGGGGACCCCCTTGCGTTCGGTGATGCAGCAACACGT
GGATTTCTTCGACCGTGACGGGGACGGGGTCATTACCATGCGGGACACCT
TTTTCGGGTTTCGCCGCCTGGGCTTCAATTGGGCCTTTTGCCTGTGGGCA
GTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTACCCGGGCTATTT
CATTGACCCCTTCATGCGCATCTACTCCCGTAACATCCACCGTGGCAAGC
ATGGAAGTGACCAGGAGGTATACGATCACGAAGGTCGCTTCATTCCTCAG
CGCTTTGAAGACATTTTTGCCAAGTGGGATCAAGAGGGAAAGGGCGGCCT
TAGCCTCCGTGACTTGTGGTACAAAGGGACGAGGGGAAGGAGAGAGGGAG
AGGAGGAGCAAGGAAAAGACAAAGCCCACAAGAGAAGCGGATTTAGAGAC
ATTGTCGAAGTTTCGTGTTCATAGATGGGGACCCCCTTGCGTTCGGTGAT
GCAGCAACACGTGGATTTCTTCGACCGTGACGGGGACGGGGTCATTACCA
TGCGGGACACCTTTTTCGGGTTTCGCCGCCTGGGCTTCAATTGGGCCTTT
TGCCTGTGGGCAGTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTA
CCCGGGCTATTTCATTGACCCCTTCATGCGCATCTACTCCCGTAACATCC
ACCGTGGCAAGCATGGAAGTGACCAGGAGGTATACGATCACGAAGGTCGC
TTCATTCCTCAGCGCTTTGAAGACATTTTTGCCAAGTGGGATCAAGAGGG
AAAGGGCGGCCTTAGCCTCCGTGACTTGTGGTACAAAGGGACGAGGGGAA
GGAGAGAGGGAGAGGAGGAGCAAGGAAAAGACAAAGCCCACAAGAGAAGC
GGATTTAGAGACATTGTCGAAGTTTCGTGTTCATAGATGGGGACCCCCTT
GCGTTCGGTGATGCAGCAACACGTGGATTTCTTCGACCGTGACGGGGACG
GGGTCATTACCATGCGGGACACCTTTTTCGGGTTTCGCCGCCTGGGCTTC
AATTGGGCCTTTTGCCTGTGGGCAGTCTTCGTCATTAATCCCGCGTTTTC
CATTGCCTCTTACCCGGGCTATTTCATTGACCCCTTCATGCGCATCTACT
CCCGTAACATCCACCGTGGCAAGCATGGAAGTGACCAGGAGGTATACGAT
CACGAAGGTCGCTTCATTCCTCAGCGCTTTGAAGACATTTTTGCCAAGTG
GGATCAAGAGGGAAAGGGCGGCCTTAGCCTCCGTGACTTGTGGTACAAAG
GGACGAGGGGAAGGAGAGAGGGAGAGGAGGAGCAAGGAAAAGACAAAGCC
CACAAGAGAAGCGGATTTAGAGACATTGTCGAAGTTTCGTGTTCATAGAT
GGGGACCCCCTTGCGTTCGGTGATGCAGCAACACGTGGATTTCTTCGACC
GTGACGGGGACGGGGTCATTACCATGCGGGACACCTTTTTCGGGTTTCGC
CGCCTGGGCTTCAATTGGGCCTTTTGCCTGTGGGCAGTCTTCGTCATTAA
TCCCGCGTTTTCCATTGCCTCTTACCCGGGCTATTTCATTGACCCCTTCA
TGCGCATCTACTCCCGTAACATCCACCGTGGCAAGCATGGAAGTGACCAG
GAGGTATACGATCACGAAGGTCGCTTCATTCCTCAGCGCTTTGAAGACAT
TTTTGCCAAGTGGGATCAAGAGGGAAAGGGCGGCCTTAGCCTCCGTGACT
TGTGGTACAAAGGGACGAGGGGAAGGAGAGAGGGAGAGGAGGAGCAAGGA
AAAGACAAAGCCCACAAGAGAAGCGGATTTAGAGACATTGTCGAAGTTTC
GTGTTCATAG

Synonyms

Publications