jgi.p|Nanoce1779_2|550083, mRNA_849 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|550083
Unique Name	mRNA_849
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2027
Alignment location	scaffold_2:577646..579861 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	550169
Track	FilteredModels2
ProteinId	550083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:577646..579861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550083	gene_849	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550083	mRNA_849-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_849	CDS_849	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:577646..579861+
coding sequence from alignment at scaffold_2:577646..579861+

mRNA sequence

>mRNA_849 ID=mRNA_849|Name=jgi.p|Nanoce1779_2|550083|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp
GCACGCCCTGTAGCAACCCGACACTCGACTGCTCTCTCACCTTCCCGTTC
TCACACTTATCTTCCCACTCCACCAAGTAAGACAGTCAGCACCAGGCCGT
ATTTTAACTTTAGGAGTACCAAGCCCCTCTGCTCCTTCGCCAACCTCCCC
TTTCCTCATTATCAGACGCCAAACCCTAGTGTCAAACCAAAGCCCAAGCA
AAATGCAGCACCCAAACCTGCGCATCGTCGTGGAAGGATGCTGTCATGGG
GAGCTTGACCAGATCTACGCCTCCATCGCCCGAATGGAACAAGAAAAAGG
GCAGAAAATGGACCTTCTCATTTGCTGCGGTGACTTCCAAGCGGTGCGCA
ATAAGGAAGACCTGAAGGCCATGAACGTCCCGAGTAAGTACCTGACCATG
GCCTCCTTCCATCGGTATTACAGCGGAGAAGCCATCGCCCCGGTTTTGAC
CCTGTTCGTTGGCGGCAACCACGAGGCATCCAACCACTTGCAAGAGCTGT
ACTATGGCGGGTGGGTCGCCCCCAACATCTACTACCTTGGATGCTCTGGC
GTGGTTTCTGTAGGCGGCGTACGCATCGCGGGCATCTCCGGCATTTATAA
TGGACGAGACTACCGTCGTGGGCACTTCGAGACTCCGCCTTACTCTCCCA
GCACTCTCCGTTCCATCTACCACGTCCGAGAATATGAAGTGTTCAAGCTT
GCGCAACTCGCCGTGGGGACAAGCAATGACGGCACCGGGAGCGCCGCACC
GGTCGACGTAATGCTTTCGCATGACTGGCCTCGTGGCATATATCACCATG
GAAATTTACCACAGCTGCTGCGGACTAAGCCTTACTTCCGACAGGAATGT
GAGACGAACACTTTGGGAAGTGAGGCTGGCGAGCTATTGCTCCAGCAACT
TCAACCCTCTTTTTGGTTCGCGGGGCATCTACACTGTAAATTTGCTGCTG
TTGTGCGTCATCCCCACCAGCTACAGCAGCAGCAGCAGCAGCGCATGACG
AAGTTTTTGGCGCTGGATAAGTGTCTGCCGAACCGGGATTTTTTGCAGCT
GGTGGAGGTGCCTCGCCCGAGGGACAATTGGGAGACACCGGTGCGATTAG
AGTATGATTTGGAATGGCTGGCGATATTGAGATCTACACATTCATTGTTA
AGTAGAGCAGAGAGGGAGGTTGTGTTGCCGCAGGAGAGTAGGATGGTGTC
GGGGGCAGATAAAGATTGGGTTCGGCAACGCCTCACCGCCGCCTGCCAAG
CCCGCGGACAAGACCCGGCCAAGCATGCCCTGGAAATCCCCCCTTCGTCC
TTCGTTCGCACGGCGGCCGTCTACAGCCCCTCCCATCCTGCTGCTGCTGC
TGGAGATGGCACCTTGCGAGGAAGCCCTCAAACAGATGCCCTGCTCAAGC
TTTTGGAGTTGAGCCATCGAGTCACGATTCCGTACACACACACGCCTCCT
CTGCCGCACCTTTCGATGCGTGGGCAGCAGCAGCAGCAGCAGGAGTCGCA
GCAGCAGCAGCAGCAGCAGGAGGAGTCGCAGCAGCAGGAAGAAGAGCAGA
AGCAGCCGAGAGGCGGGGATAGTCTCTTTTTCCTTGATCGCGGGGAGAAG
GGTCGTGACCCGAATTCGATTGAGCTGGATGACGAGGATGGGGGGGATGC
TGCGGGGGAGGAGGAAGAAGAGGAGTGCGATGATGAGGTCGCGATGAGAT
ATAAGGCGCAGCAGCAGCAGCAGCCGCAAGGCAAGTCGGAGAATAAAGAG
GAGGAGGACGTGATTGTGTTCAGAAGCGGGAGAAGCCCACCCGTAGCAGC
TACTGTTCCTGCTACTGCTGCTACTACTGCTACTGCTGCTGCTGCAGCAG
CACCACAAGCGGGAACGGCCTCTTCGCCGGCGCTTCCCTTCCGACGTAAG
CTCGTGCTGCCACCACCGTCAGCATCGTCATCGTGAGGAAAAGTTCCAAA
AAACAAGTAGAGAAAAAAGGATGAAAAAAATGATTGAAAGAATGTCCATC
CATCCATACAAAGCACGTTTTATTGAT

protein sequence of jgi.p|Nanoce1779_2|550083

>mRNA_849-protein ID=mRNA_849-protein|Name=jgi.p|Nanoce1779_2|550083|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MQHPNLRIVVEGCCHGELDQIYASIARMEQEKGQKMDLLICCGDFQAVRN
KEDLKAMNVPSKYLTMASFHRYYSGEAIAPVLTLFVGGNHEASNHLQELY
YGGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDYRRGHFETPPYSPS
TLRSIYHVREYEVFKLAQLAVGTSNDGTGSAAPVDVMLSHDWPRGIYHHG
NLPQLLRTKPYFRQECETNTLGSEAGELLLQQLQPSFWFAGHLHCKFAAV
VRHPHQLQQQQQQRMTKFLALDKCLPNRDFLQLVEVPRPRDNWETPVRLE
YDLEWLAILRSTHSLLSRAEREVVLPQESRMVSGADKDWVRQRLTAACQA
RGQDPAKHALEIPPSSFVRTAAVYSPSHPAAAAGDGTLRGSPQTDALLKL
LELSHRVTIPYTHTPPLPHLSMRGQQQQQQESQQQQQQQEESQQQEEEQK
QPRGGDSLFFLDRGEKGRDPNSIELDDEDGGDAAGEEEEEECDDEVAMRY
KAQQQQQPQGKSENKEEEDVIVFRSGRSPPVAATVPATAATTATAAAAAA
PQAGTASSPALPFRRKLVLPPPSASSS*

mRNA from alignment at scaffold_2:577646..579861+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_849 ID=mRNA_849|Name=jgi.p|Nanoce1779_2|550083|organism=Nannochloropsis oceanica|type=mRNA|length=2216bp|location=Sequence derived from alignment at scaffold_2:577646..579861+ (Nannochloropsis oceanica)
GCACGCCCTGTAGCAACCCGACACTCGACTGCTCTCTCACCTTCCCGTTC
TCACACTTATCTTCCCACTCCACCAAGTAAGACAGTCAGCACCAGGCCGT
ATTTTAACTTTAGGAGTACCAAGCCCCTCTGCTCCTTCGCCAACCTCCCC
TTTCCTCATTATCAGACGCCAAACCCTAGTGTCAAACCAAAGCCCAAGCA
AAATGCAGCACCCAAACCTGCGCATCGTCGTGGAAGGATGCTGTCATGGG
GAGCTTGACCAGATCTACGCCTCCATCGCCCGAATGGAACAAGAAAAAGG
GCAGAAAATGGACCTTCTCATTTGCTGCGGTGACTTCCAAGCGGTGCGCA
ATAAGGAAGACCTGAAGGCCATGAACGTCCCGAGTAAGTACCTGACCATG
GCCTCCTTCCATCGGTATTACAGCGGAGAAGCCATCGCCCCGGTTTTGAC
CCTGTTCGTTGGCGGCAACCACGAGGCATCCAACCACTTGCAAGAGCTGT
ACTATGGCGGGTGGGTCGCCCCCAACATCTACTACCTTGGATGCTCTGGC
GTGGTTTCTGTAGGCGGCGTACGCATCGCGGGCATCTCCGGCATTTATAA
TGGACGAGACTACCGTCGTGGGCACTTCGAGACTCCGCCTTACTCTCCCA
GCACTCTCCGTTCCATCTACCACGTCCGAGAATATGAAGTGTTCAAGCTT
GCGCAACTCGCCGTGGGGACAAGCAATGACGGCACCGGGAGCGCCGCACC
GGTCGACGTAATGCTTTCGCATGACTGGCCTCGTGGCATATATCACCATG
GAAATTTACCACAGCTGCTGCGGACTAAGCCTTACTTCCGACAGGAATGT
GAGACGAACACTTTGGGAAGTGAGGCTGGCGAGCTATTGCTCCAGCAACT
TCAACCCTCTTTTTGGTTCGCGGGGCATCTACACTGTAAATTTGCTGCTG
TTGTGCGTCATCCCCACCAGCTACAGCAGCAGCAGCAGCAGCGCATGACG
AAGTTTTTGGCGCTGGATAAGTGTCTGCCGAACCGGGATTTTTTGCAGCT
GGTGGAGGTGCCTCGCCCGAGGGACAATTGGGAGACACCGGTGCGATTAG
AGTATGATTTGGAATGGCTGGCGATATTGAGATCTACACATTCATTGTTA
AGTAGAGCAGAGAGGGAGGTTGTGTTGCCGCAGGAGAGTAGGATGGTGTC
GGGGGCAGATAAAGATTGGTGAGTTGGAGGAAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGAGATGAAGTATGAAGCGGGAAGAA
ATGTAAACGAGGCTCGTTCCACAAGCCCTTTCTCTTTCGACATTCGATTT
TAAATGAATAAAAACATTTGTAATCGACCTCTTTTCGACGTCTTTCACTT
TCCTCAGGGTTCGGCAACGCCTCACCGCCGCCTGCCAAGCCCGCGGACAA
GACCCGGCCAAGCATGCCCTGGAAATCCCCCCTTCGTCCTTCGTTCGCAC
GGCGGCCGTCTACAGCCCCTCCCATCCTGCTGCTGCTGCTGGAGATGGCA
CCTTGCGAGGAAGCCCTCAAACAGATGCCCTGCTCAAGCTTTTGGAGTTG
AGCCATCGAGTCACGATTCCGTACACACACACGCCTCCTCTGCCGCACCT
TTCGATGCGTGGGCAGCAGCAGCAGCAGCAGGAGTCGCAGCAGCAGCAGC
AGCAGCAGGAGGAGTCGCAGCAGCAGGAAGAAGAGCAGAAGCAGCCGAGA
GGCGGGGATAGTCTCTTTTTCCTTGATCGCGGGGAGAAGGGTCGTGACCC
GAATTCGATTGAGCTGGATGACGAGGATGGGGGGGATGCTGCGGGGGAGG
AGGAAGAAGAGGAGTGCGATGATGAGGTCGCGATGAGATATAAGGCGCAG
CAGCAGCAGCAGCCGCAAGGCAAGTCGGAGAATAAAGAGGAGGAGGACGT
GATTGTGTTCAGAAGCGGGAGAAGCCCACCCGTAGCAGCTACTGTTCCTG
CTACTGCTGCTACTACTGCTACTGCTGCTGCTGCAGCAGCACCACAAGCG
GGAACGGCCTCTTCGCCGGCGCTTCCCTTCCGACGTAAGCTCGTGCTGCC
ACCACCGTCAGCATCGTCATCGTGAGGAAAAGTTCCAAAAAACAAGTAGA
GAAAAAAGGATGAAAAAAATGATTGAAAGAATGTCCATCCATCCATACAA
AGCACGTTTTATTGAT

Coding sequence (CDS) from alignment at scaffold_2:577646..579861+

>mRNA_849 ID=mRNA_849|Name=jgi.p|Nanoce1779_2|550083|organism=Nannochloropsis oceanica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_2:577646..579861+ (Nannochloropsis oceanica)
ATGCAGCACCCAAACCTGCGCATCGTCGTGGAAGGATGCTGTCATGGGGA
GCTTGACCAGATCTACGCCTCCATCGCCCGAATGGAACAAGAAAAAGGGC
AGAAAATGGACCTTCTCATTTGCTGCGGTGACTTCCAAGCGGTGCGCAAT
AAGGAAGACCTGAAGGCCATGAACGTCCCGAGTAAGTACCTGACCATGGC
CTCCTTCCATCGGTATTACAGCGGAGAAGCCATCGCCCCGGTTTTGACCC
TGTTCGTTGGCGGCAACCACGAGGCATCCAACCACTTGCAAGAGCTGTAC
TATGGCGGGTGGGTCGCCCCCAACATCTACTACCTTGGATGCTCTGGCGT
GGTTTCTGTAGGCGGCGTACGCATCGCGGGCATCTCCGGCATTTATAATG
GACGAGACTACCGTCGTGGGCACTTCGAGACTCCGCCTTACTCTCCCAGC
ACTCTCCGTTCCATCTACCACGTCCGAGAATATGAAGTGTTCAAGCTTGC
GCAACTCGCCGTGGGGACAAGCAATGACGGCACCGGGAGCGCCGCACCGG
TCGACGTAATGCTTTCGCATGACTGGCCTCGTGGCATATATCACCATGGA
AATTTACCACAGCTGCTGCGGACTAAGCCTTACTTCCGACAGGAATGTGA
GACGAACACTTTGGGAAGTGAGGCTGGCGAGCTATTGCTCCAGCAACTTC
AACCCTCTTTTTGGTTCGCGGGGCATCTACACTGTAAATTTGCTGCTGTT
GTGCGTCATCCCCACCAGCTACAGCAGCAGCAGCAGCAGCGCATGACGAA
GTTTTTGGCGCTGGATAAGTGTCTGCCGAACCGGGATTTTTTGCAGCTGG
TGGAGGTGCCTCGCCCGAGGGACAATTGGGAGACACCGGTGCGATTAGAG
TATGATTTGGAATGGCTGGCGATATTGAGATCTACACATTCATTGTTAAG
TAGAGCAGAGAGGGAGGTTGTGTTGCCGCAGGAGAGTAGGATGGTGTCGG
GGGCAGATAAAGATTGGGTTCGGCAACGCCTCACCGCCGCCTGCCAAGCC
CGCGGACAAGACCCGGCCAAGCATGCCCTGGAAATCCCCCCTTCGTCCTT
CGTTCGCACGGCGGCCGTCTACAGCCCCTCCCATCCTGCTGCTGCTGCTG
GAGATGGCACCTTGCGAGGAAGCCCTCAAACAGATGCCCTGCTCAAGCTT
TTGGAGTTGAGCCATCGAGTCACGATTCCGTACACACACACGCCTCCTCT
GCCGCACCTTTCGATGCGTGGGCAGCAGCAGCAGCAGCAGGAGTCGCAGC
AGCAGCAGCAGCAGCAGGAGGAGTCGCAGCAGCAGGAAGAAGAGCAGAAG
CAGCCGAGAGGCGGGGATAGTCTCTTTTTCCTTGATCGCGGGGAGAAGGG
TCGTGACCCGAATTCGATTGAGCTGGATGACGAGGATGGGGGGGATGCTG
CGGGGGAGGAGGAAGAAGAGGAGTGCGATGATGAGGTCGCGATGAGATAT
AAGGCGCAGCAGCAGCAGCAGCCGCAAGGCAAGTCGGAGAATAAAGAGGA
GGAGGACGTGATTGTGTTCAGAAGCGGGAGAAGCCCACCCGTAGCAGCTA
CTGTTCCTGCTACTGCTGCTACTACTGCTACTGCTGCTGCTGCAGCAGCA
CCACAAGCGGGAACGGCCTCTTCGCCGGCGCTTCCCTTCCGACGTAAGCT
CGTGCTGCCACCACCGTCAGCATCGTCATCGTGAATGCAGCACCCAAACC
TGCGCATCGTCGTGGAAGGATGCTGTCATGGGGAGCTTGACCAGATCTAC
GCCTCCATCGCCCGAATGGAACAAGAAAAAGGGCAGAAAATGGACCTTCT
CATTTGCTGCGGTGACTTCCAAGCGGTGCGCAATAAGGAAGACCTGAAGG
CCATGAACGTCCCGAGTAAGTACCTGACCATGGCCTCCTTCCATCGGTAT
TACAGCGGAGAAGCCATCGCCCCGGTTTTGACCCTGTTCGTTGGCGGCAA
CCACGAGGCATCCAACCACTTGCAAGAGCTGTACTATGGCGGGTGGGTCG
CCCCCAACATCTACTACCTTGGATGCTCTGGCGTGGTTTCTGTAGGCGGC
GTACGCATCGCGGGCATCTCCGGCATTTATAATGGACGAGACTACCGTCG
TGGGCACTTCGAGACTCCGCCTTACTCTCCCAGCACTCTCCGTTCCATCT
ACCACGTCCGAGAATATGAAGTGTTCAAGCTTGCGCAACTCGCCGTGGGG
ACAAGCAATGACGGCACCGGGAGCGCCGCACCGGTCGACGTAATGCTTTC
GCATGACTGGCCTCGTGGCATATATCACCATGGAAATTTACCACAGCTGC
TGCGGACTAAGCCTTACTTCCGACAGGAATGTGAGACGAACACTTTGGGA
AGTGAGGCTGGCGAGCTATTGCTCCAGCAACTTCAACCCTCTTTTTGGTT
CGCGGGGCATCTACACTGTAAATTTGCTGCTGTTGTGCGTCATCCCCACC
AGCTACAGCAGCAGCAGCAGCAGCGCATGACGAAGTTTTTGGCGCTGGAT
AAGTGTCTGCCGAACCGGGATTTTTTGCAGCTGGTGGAGGTGCCTCGCCC
GAGGGACAATTGGGAGACACCGGTGCGATTAGAGTATGATTTGGAATGGC
TGGCGATATTGAGATCTACACATTCATTGTTAAGTAGAGCAGAGAGGGAG
GTTGTGTTGCCGCAGGAGAGTAGGATGGTGTCGGGGGCAGATAAAGATTG
GGTTCGGCAACGCCTCACCGCCGCCTGCCAAGCCCGCGGACAAGACCCGG
CCAAGCATGCCCTGGAAATCCCCCCTTCGTCCTTCGTTCGCACGGCGGCC
GTCTACAGCCCCTCCCATCCTGCTGCTGCTGCTGGAGATGGCACCTTGCG
AGGAAGCCCTCAAACAGATGCCCTGCTCAAGCTTTTGGAGTTGAGCCATC
GAGTCACGATTCCGTACACACACACGCCTCCTCTGCCGCACCTTTCGATG
CGTGGGCAGCAGCAGCAGCAGCAGGAGTCGCAGCAGCAGCAGCAGCAGCA
GGAGGAGTCGCAGCAGCAGGAAGAAGAGCAGAAGCAGCCGAGAGGCGGGG
ATAGTCTCTTTTTCCTTGATCGCGGGGAGAAGGGTCGTGACCCGAATTCG
ATTGAGCTGGATGACGAGGATGGGGGGGATGCTGCGGGGGAGGAGGAAGA
AGAGGAGTGCGATGATGAGGTCGCGATGAGATATAAGGCGCAGCAGCAGC
AGCAGCCGCAAGGCAAGTCGGAGAATAAAGAGGAGGAGGACGTGATTGTG
TTCAGAAGCGGGAGAAGCCCACCCGTAGCAGCTACTGTTCCTGCTACTGC
TGCTACTACTGCTACTGCTGCTGCTGCAGCAGCACCACAAGCGGGAACGG
CCTCTTCGCCGGCGCTTCCCTTCCGACGTAAGCTCGTGCTGCCACCACCG
TCAGCATCGTCATCGTGA

Synonyms

Publications