jgi.p|Nanoce1779_2|602252, mRNA_8489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602252
Unique NamemRNA_8489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length458
Alignment locationscaffold_24:436604..437061 -

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Properties
Property NameValue
TranscriptId602338
TrackFilteredModels2
ProteinId602252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:436604..437061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602252gene_8489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8489CDS_8489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602252mRNA_8489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8489 ID=mRNA_8489|Name=jgi.p|Nanoce1779_2|602252|organism=Nannochloropsis oceanica|type=mRNA|length=458bp
ATGGCGACCCTCCATTCCCCCTTCCTCCTCCTCTCCGTTCCTGCTCCGGT
CGGACCTGGTGCAGCTCCCTCCCACCACCACCAGCATCAGCAGCTGCTGC
AGCTGCAGGAGCAGAAACATCGACGTATGACTGCTCTCCTTCCCCCACTC
CCTCCCCCTGTCCTCCTCCACCTCCTTCCTGTCGGATCTGGTGCTGCTTC
TGTTCCAGCAGCAGCTGTAGCTGCTGCTGATTGGGGGAAGAGAACAACAA
TGACACTCCTCCCAAGAATCTCGCATCCTGCTCGAGCTGCTGCGGCTGCC
TCATCTGCTCGTCATCTGGCTCGCCTTTCATTGACCTGTTGGGAGGCGTG
GCGTCTGCTGGCAGCATCACATGAGGATGTTCGTTTGGCTGGTCGTGGTC
ATCTTTACATTTGTCATGTTGCTATATGTGTTGTTGTGTGTGGTGTGGGG
GTTGCCTG
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protein sequence of jgi.p|Nanoce1779_2|602252

>mRNA_8489-protein ID=mRNA_8489-protein|Name=jgi.p|Nanoce1779_2|602252|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MATLHSPFLLLSVPAPVGPGAAPSHHHQHQQLLQLQEQKHRRMTALLPPL
PPPVLLHLLPVGSGAASVPAAAVAAADWGKRTTMTLLPRISHPARAAAAA
SSARHLARLSLTCWEAWRLLAASHEDVRLAGRGHLYICHVAICVVVCGVG
VA
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mRNA from alignment at scaffold_24:436604..437061-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8489 ID=mRNA_8489|Name=jgi.p|Nanoce1779_2|602252|organism=Nannochloropsis oceanica|type=mRNA|length=458bp|location=Sequence derived from alignment at scaffold_24:436604..437061- (Nannochloropsis oceanica)
ATGGCGACCCTCCATTCCCCCTTCCTCCTCCTCTCCGTTCCTGCTCCGGT
CGGACCTGGTGCAGCTCCCTCCCACCACCACCAGCATCAGCAGCTGCTGC
AGCTGCAGGAGCAGAAACATCGACGTATGACTGCTCTCCTTCCCCCACTC
CCTCCCCCTGTCCTCCTCCACCTCCTTCCTGTCGGATCTGGTGCTGCTTC
TGTTCCAGCAGCAGCTGTAGCTGCTGCTGATTGGGGGAAGAGAACAACAA
TGACACTCCTCCCAAGAATCTCGCATCCTGCTCGAGCTGCTGCGGCTGCC
TCATCTGCTCGTCATCTGGCTCGCCTTTCATTGACCTGTTGGGAGGCGTG
GCGTCTGCTGGCAGCATCACATGAGGATGTTCGTTTGGCTGGTCGTGGTC
ATCTTTACATTTGTCATGTTGCTATATGTGTTGTTGTGTGTGGTGTGGGG
GTTGCCTG
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Coding sequence (CDS) from alignment at scaffold_24:436604..437061-

>mRNA_8489 ID=mRNA_8489|Name=jgi.p|Nanoce1779_2|602252|organism=Nannochloropsis oceanica|type=CDS|length=458bp|location=Sequence derived from alignment at scaffold_24:436604..437061- (Nannochloropsis oceanica)
ATGGCGACCCTCCATTCCCCCTTCCTCCTCCTCTCCGTTCCTGCTCCGGT
CGGACCTGGTGCAGCTCCCTCCCACCACCACCAGCATCAGCAGCTGCTGC
AGCTGCAGGAGCAGAAACATCGACGTATGACTGCTCTCCTTCCCCCACTC
CCTCCCCCTGTCCTCCTCCACCTCCTTCCTGTCGGATCTGGTGCTGCTTC
TGTTCCAGCAGCAGCTGTAGCTGCTGCTGATTGGGGGAAGAGAACAACAA
TGACACTCCTCCCAAGAATCTCGCATCCTGCTCGAGCTGCTGCGGCTGCC
TCATCTGCTCGTCATCTGGCTCGCCTTTCATTGACCTGTTGGGAGGCGTG
GCGTCTGCTGGCAGCATCACATGAGGATGTTCGTTTGGCTGGTCGTGGTC
ATCTTTACATTTGTCATGTTGCTATATGTGTTGTTGTGTGTGGTGTGGGG
GTTGCCTG
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Synonyms
Publications