jgi.p|Nanoce1779_2|602251, mRNA_8488 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602251
Unique Name	mRNA_8488
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2265
Alignment location	scaffold_24:434891..437155 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602337
Track	FilteredModels2
ProteinId	602251

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:434891..437155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602251	gene_8488	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602251	mRNA_8488-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8488	CDS_8488	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:434891..437155+
coding sequence from alignment at scaffold_24:434891..437155+

mRNA sequence

>mRNA_8488 ID=mRNA_8488|Name=jgi.p|Nanoce1779_2|602251|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp
GGAGGGCGGTGGATATCTGAGAGCGACAACGCATGTCAGGACTGTGTTCA
GTCGGGAGGGGAGGGAGGGAGGGGTGGATGGTTAGGGACGCTGAGGCGAT
AGAAGGTGCGTTGCGTGTACGTGGCTCGCTTCGAGGACAAATTCAAAGGG
CAGTGGCGTTCAGCTTAAACGTGACTTGCAAGCGTCTGACAATGGCCTCA
AGTCACAAGACGCGTAGAGTAGCCAGGAAAGGCCATAGACCATACATACA
AGGTATAAATTCAGCATATAGAAGAAACTCCAGATTGGGAATAGCAATGT
GTATGTGTGGTGGGCAAAATCGGCCACAATTGGAACACACACACATATAT
GGTCTTATAGGTAGGCAGGTGTGTGTAGACGAGGCGCCACGTGTAGACAT
GCCTCCAAGGGGGAAAGGCAAATCACTCTCACACCACACGTACACAACAT
ACGCGTATGTCACACTCGCATGTCTCTTTCGTCATAGCGAATATTTCAGC
CCATCTCTCCGGCCTGTCAACGTCCCATCGGGGCGGGTCATGCCAGTCAT
GCCAAGAATCCTGCATCTTTGTGACACATTTATCACTTTGCAATACAAGG
CAGGCAGTTGTGCTTTGCAAGCTCTCTCGGCTTAGCCTCCCCGTGCCCTC
CTACGTGTTGTTGCTCTTTCTTCAACAACAAAATTGATATGGTTGGTCGA
TGCGAGGCAACCACACTATCTATGCACATGGCTGGCCCTACCTTTACACA
TCATTTTGACAGCAAACCTAATCCCCTACCACCTGATATGAACTGTGCGT
GGGCATGTATCCCAAAAATATGCCGCTTCTTTTTTTGTCGCTGGCTCACC
ACTCCTTCCTTCAGCACATGACTACAATACGCTGCTTGGGCGATGCGTTC
GACACGATGGGGGAAAGGGGGTTGTTGGGCTATCTGTGAACAGATCTGTT
CCAGAATTTTGAGTTTGGAGGAATTTTGGGCTCGTCTGACTGCCTCATCG
GTTTTTGTCATATATTTGACCAACTACATGGTTAGTAGGAAAAGTTAAGT
ACAAGCCTCACAAAGCGGGAAGGAATCTGGGGCATCTATACCACAAACGG
GAGGCGTTTTTGAGACTGCGGCAAGAGTGTGCTTGAGAGGCCCAAAGAGG
CCAGCTTTGACATATACTGTGCCGATTATTGAGATCTCTTTGTGGCTGTG
TGCCATATACTCATTTGAGTCACGCGTGGTTCTCATTTGCCTCTCATTTA
CGCTTTCCCTTCGGCTCCCATTTTGCTCTCATTTTGCTCTCGACCGGGTT
ATCCTCCAGGTATTGTTTCGAGAGGCGTGAAGAGAAAAGCGGAGCGAATG
GTCATGCTCTCCAATGACCGCCGTCAGAAAATGAAATAAGCTGAGCTGAG
CTTGTTTGTTGTTTCTTTGGTATACCAATCCTTGTCTTTTATTTTAGTTT
TTTGCACCTGATATTTCTACCTTTCTTGTCTTCTGCCCAATTTCCCTTGC
TCCCTCCACCATTCCATTCCACACCATGCATTCCTATCGCATGCTCAACA
ATAACCCTATTCGACAGACACATCCCCTATCTAATCACTCTCATTTGCTG
AAAGATCCAAGACCTTCAATCAATTTACTGCCTCGTTATTATCTCTTTGA
CCTGAAGGTCTCCGCCGGACGTCTCCACCCAACCTACAAACCTCCCCCTT
CACCCCCCGTGATCAGGCAACCCCCACACCACACACAACAACACATATAG
CAACATGACAAATGTAAAGATGACCACGACCAGCCAAACGAACATCCTCA
TGTGATGCTGCCAGCAGACGCCACGCCTCCCAACAGGTCAATGAAAGGCG
AGCCAGATGACGAGCAGATGAGGCAGCCGCAGCAGCTCGAGCAGGATGCG
AGATTCTTGGGAGGAGTGTCATTGTTGTTCTCTTCCCCCAATCAGCAGCA
GCTACAGCTGCTGCTGGAACAGAAGCAGCACCAGATCCGACAGGAAGGAG
GTGGAGGAGGACAGGGGGAGGGAGTGGGGGAAGGAGAGCAGTCATACGTC
GATGTTTCTGCTCCTGCAGCTGCAGCAGCTGCTGATGCTGGTGGTGGTGG
GAGGGAGCTGCACCAGGTCCGACCGGAGCAGGAACGGAGAGGAGGAGGAA
GGGGGAATGGAGGGTCGCCATGTTTCTTCTCCTCGTAGCAGCAGCCGCAG
CAACAGCAGCACCATCTGCTGCAACGGAAGCAGCACCAGCTCCGACAGGA
GCTCCGACAGGATCG

protein sequence of jgi.p|Nanoce1779_2|602251

>mRNA_8488-protein ID=mRNA_8488-protein|Name=jgi.p|Nanoce1779_2|602251|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MSGLCSVGRGGREGWMVRDAEAIEGALRVRGSLRGQIQRAVAFSLNVTCK
RLTMASSHKTRRVARKGHRPYIQGINSAYRRNSRLGIAMCMCGGQNRPQL
EHTHIYGLIGRQVCVDEAPRVDMPPRGKGKSLSHHTYTTYAYVTLACLFR
HSEYFSPSLRPVNVPSGRVMPVMPRILHLCDTFITLQYKAGSCALQALSA
*

mRNA from alignment at scaffold_24:434891..437155+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8488 ID=mRNA_8488|Name=jgi.p|Nanoce1779_2|602251|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at scaffold_24:434891..437155+ (Nannochloropsis oceanica)
GGAGGGCGGTGGATATCTGAGAGCGACAACGCATGTCAGGACTGTGTTCA
GTCGGGAGGGGAGGGAGGGAGGGGTGGATGGTTAGGGACGCTGAGGCGAT
AGAAGGTGCGTTGCGTGTACGTGGCTCGCTTCGAGGACAAATTCAAAGGG
CAGTGGCGTTCAGCTTAAACGTGACTTGCAAGCGTCTGACAATGGCCTCA
AGTCACAAGACGCGTAGAGTAGCCAGGAAAGGCCATAGACCATACATACA
AGGTATAAATTCAGCATATAGAAGAAACTCCAGATTGGGAATAGCAATGT
GTATGTGTGGTGGGCAAAATCGGCCACAATTGGAACACACACACATATAT
GGTCTTATAGGTAGGCAGGTGTGTGTAGACGAGGCGCCACGTGTAGACAT
GCCTCCAAGGGGGAAAGGCAAATCACTCTCACACCACACGTACACAACAT
ACGCGTATGTCACACTCGCATGTCTCTTTCGTCATAGCGAATATTTCAGC
CCATCTCTCCGGCCTGTCAACGTCCCATCGGGGCGGGTCATGCCAGTCAT
GCCAAGAATCCTGCATCTTTGTGACACATTTATCACTTTGCAATACAAGG
CAGGCAGTTGTGCTTTGCAAGCTCTCTCGGCTTAGCCTCCCCGTGCCCTC
CTACGTGTTGTTGCTCTTTCTTCAACAACAAAATTGATATGGTTGGTCGA
TGCGAGGCAACCACACTATCTATGCACATGGCTGGCCCTACCTTTACACA
TCATTTTGACAGCAAACCTAATCCCCTACCACCTGATATGAACTGTGCGT
GGGCATGTATCCCAAAAATATGCCGCTTCTTTTTTTGTCGCTGGCTCACC
ACTCCTTCCTTCAGCACATGACTACAATACGCTGCTTGGGCGATGCGTTC
GACACGATGGGGGAAAGGGGGTTGTTGGGCTATCTGTGAACAGATCTGTT
CCAGAATTTTGAGTTTGGAGGAATTTTGGGCTCGTCTGACTGCCTCATCG
GTTTTTGTCATATATTTGACCAACTACATGGTTAGTAGGAAAAGTTAAGT
ACAAGCCTCACAAAGCGGGAAGGAATCTGGGGCATCTATACCACAAACGG
GAGGCGTTTTTGAGACTGCGGCAAGAGTGTGCTTGAGAGGCCCAAAGAGG
CCAGCTTTGACATATACTGTGCCGATTATTGAGATCTCTTTGTGGCTGTG
TGCCATATACTCATTTGAGTCACGCGTGGTTCTCATTTGCCTCTCATTTA
CGCTTTCCCTTCGGCTCCCATTTTGCTCTCATTTTGCTCTCGACCGGGTT
ATCCTCCAGGTATTGTTTCGAGAGGCGTGAAGAGAAAAGCGGAGCGAATG
GTCATGCTCTCCAATGACCGCCGTCAGAAAATGAAATAAGCTGAGCTGAG
CTTGTTTGTTGTTTCTTTGGTATACCAATCCTTGTCTTTTATTTTAGTTT
TTTGCACCTGATATTTCTACCTTTCTTGTCTTCTGCCCAATTTCCCTTGC
TCCCTCCACCATTCCATTCCACACCATGCATTCCTATCGCATGCTCAACA
ATAACCCTATTCGACAGACACATCCCCTATCTAATCACTCTCATTTGCTG
AAAGATCCAAGACCTTCAATCAATTTACTGCCTCGTTATTATCTCTTTGA
CCTGAAGGTCTCCGCCGGACGTCTCCACCCAACCTACAAACCTCCCCCTT
CACCCCCCGTGATCAGGCAACCCCCACACCACACACAACAACACATATAG
CAACATGACAAATGTAAAGATGACCACGACCAGCCAAACGAACATCCTCA
TGTGATGCTGCCAGCAGACGCCACGCCTCCCAACAGGTCAATGAAAGGCG
AGCCAGATGACGAGCAGATGAGGCAGCCGCAGCAGCTCGAGCAGGATGCG
AGATTCTTGGGAGGAGTGTCATTGTTGTTCTCTTCCCCCAATCAGCAGCA
GCTACAGCTGCTGCTGGAACAGAAGCAGCACCAGATCCGACAGGAAGGAG
GTGGAGGAGGACAGGGGGAGGGAGTGGGGGAAGGAGAGCAGTCATACGTC
GATGTTTCTGCTCCTGCAGCTGCAGCAGCTGCTGATGCTGGTGGTGGTGG
GAGGGAGCTGCACCAGGTCCGACCGGAGCAGGAACGGAGAGGAGGAGGAA
GGGGGAATGGAGGGTCGCCATGTTTCTTCTCCTCGTAGCAGCAGCCGCAG
CAACAGCAGCACCATCTGCTGCAACGGAAGCAGCACCAGCTCCGACAGGA
GCTCCGACAGGATCG

Coding sequence (CDS) from alignment at scaffold_24:434891..437155+

>mRNA_8488 ID=mRNA_8488|Name=jgi.p|Nanoce1779_2|602251|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_24:434891..437155+ (Nannochloropsis oceanica)
ATGTCAGGACTGTGTTCAGTCGGGAGGGGAGGGAGGGAGGGGTGGATGGT
TAGGGACGCTGAGGCGATAGAAGGTGCGTTGCGTGTACGTGGCTCGCTTC
GAGGACAAATTCAAAGGGCAGTGGCGTTCAGCTTAAACGTGACTTGCAAG
CGTCTGACAATGGCCTCAAGTCACAAGACGCGTAGAGTAGCCAGGAAAGG
CCATAGACCATACATACAAGGTATAAATTCAGCATATAGAAGAAACTCCA
GATTGGGAATAGCAATGTGTATGTGTGGTGGGCAAAATCGGCCACAATTG
GAACACACACACATATATGGTCTTATAGGTAGGCAGGTGTGTGTAGACGA
GGCGCCACGTGTAGACATGCCTCCAAGGGGGAAAGGCAAATCACTCTCAC
ACCACACGTACACAACATACGCGTATGTCACACTCGCATGTCTCTTTCGT
CATAGCGAATATTTCAGCCCATCTCTCCGGCCTGTCAACGTCCCATCGGG
GCGGGTCATGCCAGTCATGCCAAGAATCCTGCATCTTTGTGACACATTTA
TCACTTTGCAATACAAGGCAGGCAGTTGTGCTTTGCAAGCTCTCTCGGCT
TAG

Synonyms

Publications