jgi.p|Nanoce1779_2|568481, mRNA_8487 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568481
Unique NamemRNA_8487
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length717
Alignment locationscaffold_24:432774..433490 -

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Properties
Property NameValue
TranscriptId568567
TrackFilteredModels2
ProteinId568481
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:432774..433490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568481gene_8487Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8487CDS_8487Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568481mRNA_8487-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Nanoce1779_2|568481|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGCAGTGCCCCACACCGCCCGCCAAATCCCCTGCCACTCCCTCCCCCAC
TCCCCCCCCCTCTCCCCCCCCTGCCGACCAGCCCCCTCCTGCTATACCTG
AAGAGACCCGAAAGCCGCCTGTCGTTCATCCCCTCCCTCCCACTGACCCC
CTTCCTCCACCTCCCGTCGCCACCGACGGGAATGGCGACATTGTCGTCCC
TCCTGCCGCGGCGGCGGCGGCTGTTGCTGCTGCCAACGCAAATGGGGCTG
CATCTGCTCCTCTTGATAAAACGCCTGGAACCGTTGAGACACCCAACGGC
TTGCAGGCCGTTTCCCTGAAGGAAGGCGGAAAGGAGGGTTGGCGAGAGGC
CGGGAAGAAGGAGAAGGGCAAGGGGAAAGAGAAGGGGAAAGAGAAGGAGG
AGGAGGTGGTGACAAATGAGTTGAGGTCAAAACCCTACCCTTCCGACTAT
CCCGGCTTGCGGTTGGGTTGCGTGAGGGAGGGAGGTGGAAAGACACAGGG
AGGGTACTGTGCGATGAAGCGAGCAGTGCTTGCCGGGGCACCTGCCACCG
TGGGCGCAGCTGGAGGAGGGGGAGGATCGGTGTGTGATTTCTACCTGTCG
TGTTGTTATGCACAATACGCGAAAATGAACTGGACGGATCTGCCTAATGC
GGAGGTGGTTGAGGCTCATTGTCCCGGGGCTACGGTTTATTTGAACGGGA
AATTATGCACGGTTTAA
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protein sequence of jgi.p|Nanoce1779_2|568481

>mRNA_8487-protein ID=mRNA_8487-protein|Name=jgi.p|Nanoce1779_2|568481|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MQCPTPPAKSPATPSPTPPPSPPPADQPPPAIPEETRKPPVVHPLPPTDP
LPPPPVATDGNGDIVVPPAAAAAAVAAANANGAASAPLDKTPGTVETPNG
LQAVSLKEGGKEGWREAGKKEKGKGKEKGKEKEEEVVTNELRSKPYPSDY
PGLRLGCVREGGGKTQGGYCAMKRAVLAGAPATVGAAGGGGGSVCDFYLS
CCYAQYAKMNWTDLPNAEVVEAHCPGATVYLNGKLCTV*
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mRNA from alignment at scaffold_24:432774..433490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Nanoce1779_2|568481|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at scaffold_24:432774..433490- (Nannochloropsis oceanica)
ATGCAGTGCCCCACACCGCCCGCCAAATCCCCTGCCACTCCCTCCCCCAC
TCCCCCCCCCTCTCCCCCCCCTGCCGACCAGCCCCCTCCTGCTATACCTG
AAGAGACCCGAAAGCCGCCTGTCGTTCATCCCCTCCCTCCCACTGACCCC
CTTCCTCCACCTCCCGTCGCCACCGACGGGAATGGCGACATTGTCGTCCC
TCCTGCCGCGGCGGCGGCGGCTGTTGCTGCTGCCAACGCAAATGGGGCTG
CATCTGCTCCTCTTGATAAAACGCCTGGAACCGTTGAGACACCCAACGGC
TTGCAGGCCGTTTCCCTGAAGGAAGGCGGAAAGGAGGGTTGGCGAGAGGC
CGGGAAGAAGGAGAAGGGCAAGGGGAAAGAGAAGGGGAAAGAGAAGGAGG
AGGAGGTGGTGACAAATGAGTTGAGGTCAAAACCCTACCCTTCCGACTAT
CCCGGCTTGCGGTTGGGTTGCGTGAGGGAGGGAGGTGGAAAGACACAGGG
AGGGTACTGTGCGATGAAGCGAGCAGTGCTTGCCGGGGCACCTGCCACCG
TGGGCGCAGCTGGAGGAGGGGGAGGATCGGTGTGTGATTTCTACCTGTCG
TGTTGTTATGCACAATACGCGAAAATGAACTGGACGGATCTGCCTAATGC
GGAGGTGGTTGAGGCTCATTGTCCCGGGGCTACGGTTTATTTGAACGGGA
AATTATGCACGGTTTAA
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Coding sequence (CDS) from alignment at scaffold_24:432774..433490-

>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Nanoce1779_2|568481|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_24:432774..433490- (Nannochloropsis oceanica)
ATGCAGTGCCCCACACCGCCCGCCAAATCCCCTGCCACTCCCTCCCCCAC
TCCCCCCCCCTCTCCCCCCCCTGCCGACCAGCCCCCTCCTGCTATACCTG
AAGAGACCCGAAAGCCGCCTGTCGTTCATCCCCTCCCTCCCACTGACCCC
CTTCCTCCACCTCCCGTCGCCACCGACGGGAATGGCGACATTGTCGTCCC
TCCTGCCGCGGCGGCGGCGGCTGTTGCTGCTGCCAACGCAAATGGGGCTG
CATCTGCTCCTCTTGATAAAACGCCTGGAACCGTTGAGACACCCAACGGC
TTGCAGGCCGTTTCCCTGAAGGAAGGCGGAAAGGAGGGTTGGCGAGAGGC
CGGGAAGAAGGAGAAGGGCAAGGGGAAAGAGAAGGGGAAAGAGAAGGAGG
AGGAGGTGGTGACAAATGAGTTGAGGTCAAAACCCTACCCTTCCGACTAT
CCCGGCTTGCGGTTGGGTTGCGTGAGGGAGGGAGGTGGAAAGACACAGGG
AGGGTACTGTGCGATGAAGCGAGCAGTGCTTGCCGGGGCACCTGCCACCG
TGGGCGCAGCTGGAGGAGGGGGAGGATCGGTGTGTGATTTCTACCTGTCG
TGTTGTTATGCACAATACGCGAAAATGAACTGGACGGATCTGCCTAATGC
GGAGGTGGTTGAGGCTCATTGTCCCGGGGCTACGGTTTATTTGAACGGGA
AATTATGCACGGTTTAA
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Synonyms
Publications