jgi.p|Nanoce1779_2|198434, mRNA_8486 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|198434
Unique NamemRNA_8486
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length753
Alignment locationscaffold_24:428125..429138 +

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Properties
Property NameValue
TranscriptId198520
TrackFilteredModels2
ProteinId198434
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:428125..429138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|198434gene_8486Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|198434mRNA_8486-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8486CDS_8486Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8486 ID=mRNA_8486|Name=jgi.p|Nanoce1779_2|198434|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
CAAGCGCCAAGTCACCTCTTTCCTCGTCACATATTTACGTCCACGCTTAA
GCTAGCCGACATTTTCTGCTTCTCACCCCCCTTTGGCCCCCACCTATCCT
CCTTCCCTCTCCGGAAAAGGCTACCTAGTGACTGACAATGGACAACAGCT
CCCATCCTACTTGATAAAGTAGCTGGGTGTGAGCTTGCGAAGTGGAGAAA
AGGCTAGAGCTACAAGGACAAACAATTTCTACCGCATGGGGACGAGCACC
ACCAGCCATGACCTCGCTACCAACGTACCCTCCTCCACCTCCTCCTCCTT
TTCCTCCTCCTCCTCCTCCCCTGCGTCCTCCTTCCAACCCTCTACCCTGT
CCCTCGGCAAGCTCACACGTCGTGTCTCACAACAGACACGTGGCGTGCTG
GGTAATCACCTCCAGAGCATCCACTTTGATGCGCAGTTCGTTCAAGCCCT
CCTCAATGCCTATAGCCAGGCTCTCCCTCATCCCCTCCCTCCCTCCCTCC
CTCCTTCTCTTCCTCCCGTCTTTGCCAATCTACGCAACGGCGAGTGGTAC
CTTCCTCCAGAAAAGTGGCATGGGAAGTGCTATTTCAAGAATTTCTCTCC
CTGTCTCCCTCTCTCCCTCCCTACCTCCTTATCTCCCTACCTACCTACCT
ACCTCCTAAGAGCACTGACGGTCACTCGGGACAGTGGTCGTTCTCCTCCT
CACGACTGAATCTTCACCTGGCTTTGGCGGCCGCAAAGGGAGGGGGGGCA
ATT
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protein sequence of jgi.p|Nanoce1779_2|198434

>mRNA_8486-protein ID=mRNA_8486-protein|Name=jgi.p|Nanoce1779_2|198434|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGTSTTSHDLATNVPSSTSSSFSSSSSSPASSFQPSTLSLGKLTRRVSQQ
TRGVLGNHLQSIHFDAQFVQALLNAYSQALPHPLPPSLPPSLPPVFANLR
NGEWYLPPEKWHGKCYFKNFSPCLPLSLPTSLSPYLPTYLLRALTVTRDS
GRSPPHD*
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mRNA from alignment at scaffold_24:428125..429138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8486 ID=mRNA_8486|Name=jgi.p|Nanoce1779_2|198434|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at scaffold_24:428125..429138+ (Nannochloropsis oceanica)
CAAGCGCCAAGTCACCTCTTTCCTCGTCACATATTTACGTCCACGCTTAA
GCTAGCCGACATTTTCTGCTTCTCACCCCCCTTTGGCCCCCACCTATCCT
CCTTCCCTCTCCGGAAAAGGCTACCTAGTGACTGACAATGGACAACAGCT
CCCATCCTACTTGATAAAGTAGCTGGGTGTGAGCTTGCGAAGTGGAGAAA
AGGCTAGAGCTACAAGGACAAACAATTTCTACCGCATGGGGACGAGCACC
ACCAGCCATGACCTCGCTACCAACGTACCCTCCTCCACCTCCTCCTCCTT
TTCCTCCTCCTCCTCCTCCCCTGCGTCCTCCTTCCAACCCTCTACCCTGT
CCCTCGGCAAGCTCACACGTCGTGTCTCACAACAGACACGTGGCGTGCTG
GGTAATCACCTCCAGAGCATCCACTTTGATGCGCAGGTGAGGGGAGGGCT
GGAGGAGGGGAGGGAGGGAGGGAGAGGGAGAGGGAAGGTGGACAGGTCTT
GGTAAACGGTAGCATCAAGTACTTCTATCCATGTCTGCACTTGTCATGTT
TTCCAACTTGTTGCACTGATTGTCCCTTCTCTCCATCCCTCCCTCCCTTC
AATCCTCCTTTCGAGCAGTTCGTTCAAGCCCTCCTCAATGCCTATAGCCA
GGCTCTCCCTCATCCCCTCCCTCCCTCCCTCCCTCCTTCTCTTCCTCCCG
TCTTTGCCAATCTACGCAACGGCGAGTGGTACCTTCCTCCAGAAAAGTGG
CATGGGAAGTGCTATTTCAAGGTAAGGGAGGAAGGGAGGAAGGGAGGGTG
GGAGGGAGGGGAAGGCAGCGTAGGGATAGGGAGGTGAAACGACGCCTTAG
AATTTCTCTCCCTGTCTCCCTCTCTCCCTCCCTACCTCCTTATCTCCCTA
CCTACCTACCTACCTCCTAAGAGCACTGACGGTCACTCGGGACAGTGGTC
GTTCTCCTCCTCACGACTGAATCTTCACCTGGCTTTGGCGGCCGCAAAGG
GAGGGGGGGCAATT
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Coding sequence (CDS) from alignment at scaffold_24:428125..429138+

>mRNA_8486 ID=mRNA_8486|Name=jgi.p|Nanoce1779_2|198434|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_24:428125..429138+ (Nannochloropsis oceanica)
ATGGGGACGAGCACCACCAGCCATGACCTCGCTACCAACGTACCCTCCTC
CACCTCCTCCTCCTTTTCCTCCTCCTCCTCCTCCCCTGCGTCCTCCTTCC
AACCCTCTACCCTGTCCCTCGGCAAGCTCACACGTCGTGTCTCACAACAG
ACACGTGGCGTGCTGGGTAATCACCTCCAGAGCATCCACTTTGATGCGCA
GTTCGTTCAAGCCCTCCTCAATGCCTATAGCCAGGCTCTCCCTCATCCCC
TCCCTCCCTCCCTCCCTCCTTCTCTTCCTCCCGTCTTTGCCAATCTACGC
AACGGCGAGTGGTACCTTCCTCCAGAAAAGTGGCATGGGAAGTGCTATTT
CAAGAATTTCTCTCCCTGTCTCCCTCTCTCCCTCCCTACCTCCTTATCTC
CCTACCTACCTACCTACCTCCTAAGAGCACTGACGGTCACTCGGGACAGT
GGTCGTTCTCCTCCTCACGACTGAATGGGGACGAGCACCACCAGCCATGA
CCTCGCTACCAACGTACCCTCCTCCACCTCCTCCTCCTTTTCCTCCTCCT
CCTCCTCCCCTGCGTCCTCCTTCCAACCCTCTACCCTGTCCCTCGGCAAG
CTCACACGTCGTGTCTCACAACAGACACGTGGCGTGCTGGGTAATCACCT
CCAGAGCATCCACTTTGATGCGCAGTTCGTTCAAGCCCTCCTCAATGCCT
ATAGCCAGGCTCTCCCTCATCCCCTCCCTCCCTCCCTCCCTCCTTCTCTT
CCTCCCGTCTTTGCCAATCTACGCAACGGCGAGTGGTACCTTCCTCCAGA
AAAGTGGCATGGGAAGTGCTATTTCAAGAATTTCTCTCCCTGTCTCCCTC
TCTCCCTCCCTACCTCCTTATCTCCCTACCTACCTACCTACCTCCTAAGA
GCACTGACGGTCACTCGGGACAGTGGTCGTTCTCCTCCTCACGACTGAAT
GGGGACGAGCACCACCAGCCATGACCTCGCTACCAACGTACCCTCCTCCA
CCTCCTCCTCCTTTTCCTCCTCCTCCTCCTCCCCTGCGTCCTCCTTCCAA
CCCTCTACCCTGTCCCTCGGCAAGCTCACACGTCGTGTCTCACAACAGAC
ACGTGGCGTGCTGGGTAATCACCTCCAGAGCATCCACTTTGATGCGCAGT
TCGTTCAAGCCCTCCTCAATGCCTATAGCCAGGCTCTCCCTCATCCCCTC
CCTCCCTCCCTCCCTCCTTCTCTTCCTCCCGTCTTTGCCAATCTACGCAA
CGGCGAGTGGTACCTTCCTCCAGAAAAGTGGCATGGGAAGTGCTATTTCA
AGAATTTCTCTCCCTGTCTCCCTCTCTCCCTCCCTACCTCCTTATCTCCC
TACCTACCTACCTACCTCCTAAGAGCACTGACGGTCACTCGGGACAGTGG
TCGTTCTCCTCCTCACGACTGA
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Synonyms
Publications