jgi.p|Nanoce1779_2|198195, mRNA_8484 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|198195
Unique NamemRNA_8484
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1070
Alignment locationscaffold_24:422033..423102 +

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Properties
Property NameValue
TranscriptId198281
TrackFilteredModels2
ProteinId198195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:422033..423102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|198195gene_8484Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|198195mRNA_8484-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8484CDS_8484Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8484 ID=mRNA_8484|Name=jgi.p|Nanoce1779_2|198195|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp
AGGAGATGAAATGGCTTTTCAATTTTATTTTTATTTTTCCCTAACTCAAG
TACCGTTTCATTTTGTGTGTGTATCCATCGTCCTGGTGGCTCTCATTCAT
ATTTGCGTCAAACTCAAAGCCACACCTATGGGATGGGGTTGTAGAAATAG
GTAGACCGAAAGCAAGGATGAGTTATGCCGCCCTCTTTACCCTCGAGTAT
TTGTGGCATATGTACCAGTACTGGGATCTCTCTGCTTGTAGACGAAGAAA
GGCCCGGAGTAGATGCGACCGAGACTAAATATTACGGGCTCGGGGGATAC
CCCCTTTGTGCTAGTGCTGGATTGAAGGCACGTCTCGGAGTGTGGGGAGG
GGTCGAATCGATTGTCGCAGCCGCAGCAGCAGCAGCACCACCACCACCAC
CACCACCAAGGAGGAGGTGGAGGAGACGCAGAAACAGGAGGAGGGGGGGA
AGAAAGGGGGAAGGGTTAACGGGTGAGACAATGGCGACCCTTTACTGCCG
CAAGCCGTTGCAGATGCTTTGGGCGCGTTTCCCTCATTTTGACTGGAAGG
AAAATAATACACTAATGGTCGATGATACAGACAAGACTTTCTCCTTATCG
CTGGGAAATGGTGTGAAGTTCAAGGAGTTCCGGATGGAGGTCAGGAAGGG
AGCGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAGTTGGTGTGGCTTG
GCGACGTTCTTCGAGGAGGTGGGAAGGGAACGGCATGCACAGGGGAGAGC
CGTGCCGTCCATGGTTCCAGGGAGGGAAGGAGGGGGGGAAGGAGGGAGGG
GAGGGGCGTGGCCTCATGGCGCGTGGCGGGAAGGGACGGGTGTGGTGTGA
CGTCTCGACGGAAGGAAGGGAGAAAGGAAGGGCAACAGAGTAAGACATGA
AGATAGGATGCGGAACTGACGAAGGGGTAAACGACGGAAGAATGAAGAAG
GGGAGAAAGCATAGAAAACGAGAAAAGGAACTCTTCGATCAGCAGCGACT
ACAGCAGCAGTGGCAACAGCTACAGTAGTAGCAGAAACGAAACGGCAGCT
GGTGTCCGACTGTGTCCGAC
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protein sequence of jgi.p|Nanoce1779_2|198195

>mRNA_8484-protein ID=mRNA_8484-protein|Name=jgi.p|Nanoce1779_2|198195|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MPPSLPSSICGICTSTGISLLVDEERPGVDATETKYYGLGGYPLCASAGL
KARLGVWGGVESIVAAAAAAAPPPPPPPRRRWRRRRNRRRGGRKGEGLTG
ETMATLYCRKPLQMLWARFPHFDWKENNTLMVDDTDKTFSLSLGNGVKFK
EFRMEVRKGAREGGREGGREELVWLGDVLRGGGKGTACTGESRAVHGSRE
GRRGGRREGRGVASWRVAGRDGCGVTSRRKEGRKEGQQSKT*
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mRNA from alignment at scaffold_24:422033..423102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8484 ID=mRNA_8484|Name=jgi.p|Nanoce1779_2|198195|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp|location=Sequence derived from alignment at scaffold_24:422033..423102+ (Nannochloropsis oceanica)
AGGAGATGAAATGGCTTTTCAATTTTATTTTTATTTTTCCCTAACTCAAG
TACCGTTTCATTTTGTGTGTGTATCCATCGTCCTGGTGGCTCTCATTCAT
ATTTGCGTCAAACTCAAAGCCACACCTATGGGATGGGGTTGTAGAAATAG
GTAGACCGAAAGCAAGGATGAGTTATGCCGCCCTCTTTACCCTCGAGTAT
TTGTGGCATATGTACCAGTACTGGGATCTCTCTGCTTGTAGACGAAGAAA
GGCCCGGAGTAGATGCGACCGAGACTAAATATTACGGGCTCGGGGGATAC
CCCCTTTGTGCTAGTGCTGGATTGAAGGCACGTCTCGGAGTGTGGGGAGG
GGTCGAATCGATTGTCGCAGCCGCAGCAGCAGCAGCACCACCACCACCAC
CACCACCAAGGAGGAGGTGGAGGAGACGCAGAAACAGGAGGAGGGGGGGA
AGAAAGGGGGAAGGGTTAACGGGTGAGACAATGGCGACCCTTTACTGCCG
CAAGCCGTTGCAGATGCTTTGGGCGCGTTTCCCTCATTTTGACTGGAAGG
AAAATAATACACTAATGGTCGATGATACAGACAAGACTTTCTCCTTATCG
CTGGGAAATGGTGTGAAGTTCAAGGAGTTCCGGATGGAGGTCAGGAAGGG
AGCGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAGTTGGTGTGGCTTG
GCGACGTTCTTCGAGGAGGTGGGAAGGGAACGGCATGCACAGGGGAGAGC
CGTGCCGTCCATGGTTCCAGGGAGGGAAGGAGGGGGGGAAGGAGGGAGGG
GAGGGGCGTGGCCTCATGGCGCGTGGCGGGAAGGGACGGGTGTGGTGTGA
CGTCTCGACGGAAGGAAGGGAGAAAGGAAGGGCAACAGAGTAAGACATGA
AGATAGGATGCGGAACTGACGAAGGGGTAAACGACGGAAGAATGAAGAAG
GGGAGAAAGCATAGAAAACGAGAAAAGGAACTCTTCGATCAGCAGCGACT
ACAGCAGCAGTGGCAACAGCTACAGTAGTAGCAGAAACGAAACGGCAGCT
GGTGTCCGACTGTGTCCGAC
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Coding sequence (CDS) from alignment at scaffold_24:422033..423102+

>mRNA_8484 ID=mRNA_8484|Name=jgi.p|Nanoce1779_2|198195|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_24:422033..423102+ (Nannochloropsis oceanica)
ATGCCGCCCTCTTTACCCTCGAGTATTTGTGGCATATGTACCAGTACTGG
GATCTCTCTGCTTGTAGACGAAGAAAGGCCCGGAGTAGATGCGACCGAGA
CTAAATATTACGGGCTCGGGGGATACCCCCTTTGTGCTAGTGCTGGATTG
AAGGCACGTCTCGGAGTGTGGGGAGGGGTCGAATCGATTGTCGCAGCCGC
AGCAGCAGCAGCACCACCACCACCACCACCACCAAGGAGGAGGTGGAGGA
GACGCAGAAACAGGAGGAGGGGGGGAAGAAAGGGGGAAGGGTTAACGGGT
GAGACAATGGCGACCCTTTACTGCCGCAAGCCGTTGCAGATGCTTTGGGC
GCGTTTCCCTCATTTTGACTGGAAGGAAAATAATACACTAATGGTCGATG
ATACAGACAAGACTTTCTCCTTATCGCTGGGAAATGGTGTGAAGTTCAAG
GAGTTCCGGATGGAGGTCAGGAAGGGAGCGAGGGAGGGAGGGAGAGAGGG
AGGGAGGGAGGAGTTGGTGTGGCTTGGCGACGTTCTTCGAGGAGGTGGGA
AGGGAACGGCATGCACAGGGGAGAGCCGTGCCGTCCATGGTTCCAGGGAG
GGAAGGAGGGGGGGAAGGAGGGAGGGGAGGGGCGTGGCCTCATGGCGCGT
GGCGGGAAGGGACGGGTGTGGTGTGACGTCTCGACGGAAGGAAGGGAGAA
AGGAAGGGCAACAGAGTAAGACATGA
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Synonyms
Publications