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Properties
| Property Name | Value |
|---|
| TranscriptId | 602296 |
| Track | FilteredModels2 |
| ProteinId | 602210 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:410607..412942 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8480 ID=mRNA_8480|Name=jgi.p|Nanoce1779_2|602210|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
AGCCCCCAGACACACAAGAAAAAGCTCGACGCGGTCTGTCCGACCATGCA
GCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAAGAGCA
GGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTTTGACC
ACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGGACTGATGC
CTTCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCTCCATGCTACTC
CTACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCCCTCCCAAACCG
GCCCACGGCCACGGCGGCGGTGGACACGGGGGCATGATGGGCGGTCCCAT
CGACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGAGGCCATGCGAT
TACACACCCGAGAGCAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGGGA
GTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGACTACCT
CCAGTTCCTCGTCGATTCCAAGCTGGTATACGAGACGTTCGACGCCCTCC
TGACCGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGGAGCGC
GCGGGACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTACGCAGG
GGAAGTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGCGCAAT
TTTTGAAGGAGTTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCCATTAT
TACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGGAAGAA
AATGTCGTCCGCCCTGCTCGACGGGCATGAGCTGCACTTCTACCAATGGG
AAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGTTGGAT
TCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTGGGCGA
GACGAAGAACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACATCGCAC
GGCCGCCCAACCAGCGGCCAGAGGTGGCTTAAAGGGAGCAATGAAGGAAG
GAGGGAGGGAGGCAGAGAGGAAGGAGAGAGAAACGTCAGGGGTAGGCGTT
TTGTGGGAGGGAGGGAGGGAGGGAGGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|602210 >mRNA_8480-protein ID=mRNA_8480-protein|Name=jgi.p|Nanoce1779_2|602210|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MQPPPSNNSSSSGINNKSRGSISTSSRRRALRLLTTTAATLTIASLVGRT
DAFLPPIPSSTSIRLHATPTSTSSSSPATAAPPKPAHGHGGGGHGGMMGG
PIDPNSFVQTELRKEAMRLHTREQAPREGEAKEEGVEQSPFQQWAPTRQD
YLQFLVDSKLVYETFDALLTAQPSLAPFRHTGLERAGPLEKDIAWFAATY
AGEVHVPPVGPYGQAYAQFLKELAPKSLPALMCHYYNFFFAHTAGGRMIG
KKMSSALLDGHELHFYQWEGSDVKEKLDAVRRSLDSMAAGWSREEKDECV
GETKNTFTKGGSLLAYIARPPNQRPEVA* back to topmRNA from alignment at scaffold_24:410607..412942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8480 ID=mRNA_8480|Name=jgi.p|Nanoce1779_2|602210|organism=Nannochloropsis oceanica|type=mRNA|length=2336bp|location=Sequence derived from alignment at scaffold_24:410607..412942- (Nannochloropsis oceanica)
AGCCCCCAGACACACAAGAAAAAGCTCGACGCGGTCTGTCCGACCATGCA
GCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAAGAGCA
GGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTTTGACC
ACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGGTGTGGCTT
GACTGAAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTTTCCCTCCCTCCCGCCCCATTCTCGCGCCCCTCTC
TGCCACCATTTCTCACCCACCATCGTCACCTCCACCCTCCTCCCCTATCT
TTTACCATTCCAGGACTGATGCCTTCCTTCCTCCCATCCCCTCGTCTACC
TCTATCCGTCTCCATGCTACTCCTACAAGCACCTCTTCCTCCTCGCCCGC
TACTGCTGCCCCTCCCAAACCGGCCCACGGCCACGGCGGCGGTGGACACG
GGGGCATGATGGGCGGTCCCATCGACCCCAATTCCTTCGTTCAAACAGAG
CTGAGGAAGGAGGCCATGCGATTACACACCCGAGAGCAGGTAGGAGGAAT
ACACGGACATTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTC
TTTCTCCCTCTTCTTCTCCCTTCCTCCCTCCCTTCTCAGCCAGGAGCAAT
CCTACATAGATATCGACATCTTCTCCTCCCATCATCCCTCCCTCCACCCC
TTCTTCCCCTCTAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGGGAGTC
GAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGACTACCTCCA
GTTCCTCGTCGATTCCAAGCTGGTACGTCCTTACCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCTTCCC
TCCCCCCTTCCCTCATTTCCTCTTCCTCTCTATCACCCCTTTCTCCCTTT
AGCTTCCATGCACGTGGTTCACCTCCCTCCCTCCCTCCCTTCCTCCCCCC
CTCCCTTTCTCCCTCCCCCTCTCCCTACCTAGGTATACGAGACGTTCGAC
GCCCTCCTGACCGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCT
GGAGCGCGCGGGACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTT
ACGCAGGGGAAGTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTAC
GCGCAATTTTTGAAGGAGGTGAGGGAAAGGGGAAGGGGGAGAGGAGGGGG
ATCGGAAGGAAGGAAAATGAGAGGGAGGAATGGAGGGATCAGTTCGTTTT
GCACCTGTTTGCTCTGTACTAACCTACCTACCAACCATCCCTCCCCTCCC
TCCCTCCCTCCCTCCCCCCCTCCCAGTTGGCGCCCAAGAGCCTCCCCGCG
CTAATGTGCCATTATTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCG
CATGATCGGGAAGAAAATGTCGTCCGCCCTGCTCGGTACGTGCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCGTCCTTGTAAATAG
ATATACACATACACGAGTCAATGCAGGAGGAAAATATGTAATCAGTATCA
CCTCTACCCCTTATCTAATCAACATCACCCCTACCCCTAATCTGATCAGC
ATCACCCACCCCTACCCCCAATCTAATCAACATCACCCCTACCCCTAATC
TAATCAACATCACCCCTACCCCTAACCTGATCAGCATCACCCACCCCTAC
ATCTAATCTAATCAACATCACCCCTACCCCTAACCTGATCAGCATCACCC
CTACCCCTAATCTGATCAACATCACCCCTACCCCTAATCTAATCAACATC
ACCCACCCCTACCTCTCTCACCCCCCTCTCGAACCAACAGACGGGCATGA
GCTTTGTAGATGAAGCGACACTAATCAAAACCATCCCAACCCCCTCCCCC
TCCCATGCCCCCTTTAAACCAACAGACGGGCATGAGCTGCACTTCTACCA
ATGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGT
TGGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTG
GGCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACAT
CGCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAAAGGGAGCAATGAA
GGAAGGAGGGAGGGAGGCAGAGAGGAAGGAGAGAGAAACGTCAGGGGTAG
GCGTTTTGTGGGAGGGAGGGAGGGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_24:410607..412942- >mRNA_8480 ID=mRNA_8480|Name=jgi.p|Nanoce1779_2|602210|organism=Nannochloropsis oceanica|type=CDS|length=5922bp|location=Sequence derived from alignment at scaffold_24:410607..412942- (Nannochloropsis oceanica)
ACGGGCATGAGCTGCACTTCTACCAATGGGAAGGGAGTGACGTAAAGGAG
AAGCTGGACGCAGTCCGGCGGTCGTTGGATTCGATGGCGGCAGGCTGGAG
CAGGGAGGAGAAGGACGAGTGTGTGGGCGAGACGAAGAACACATTTACCA
AGGGAGGCTCCCTCCTCGCGTACATCGCACGGCCGCCCAACCAGCGGCCA
GAGGTGGCTTAATTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCCATTA
TTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGGAAGA
AAATGTCGTCCGCCCTGCTCGGTATACGAGACGTTCGACGCCCTCCTGAC
CGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGGAGCGCGCGG
GACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTACGCAGGGGAA
GTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGCGCAATTTTT
GAAGGAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGGGAGTCGAGCAAA
GTCCGTTCCAGCAGTGGGCACCGACGCGACAAGACTACCTCCAGTTCCTC
GTCGATTCCAAGCTGGACTGATGCCTTCCTTCCTCCCATCCCCTCGTCTA
CCTCTATCCGTCTCCATGCTACTCCTACAAGCACCTCTTCCTCCTCGCCC
GCTACTGCTGCCCCTCCCAAACCGGCCCACGGCCACGGCGGCGGTGGACA
CGGGGGCATGATGGGCGGTCCCATCGACCCCAATTCCTTCGTTCAAACAG
AGCTGAGGAAGGAGGCCATGCGATTACACACCCGAGAGCAGATGCAGCCT
CCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAAGAGCAGGGG
CAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTTTGACCACCA
CGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGACGGGCATGAGCT
GCACTTCTACCAATGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAG
TCCGGCGGTCGTTGGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAG
GACGAGTGTGTGGGCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCT
CCTCGCGTACATCGCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAAT
TGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCCATTATTACAATTTCTTC
TTCGCCCACACGGCCGGGGGCCGCATGATCGGGAAGAAAATGTCGTCCGC
CCTGCTCGGTATACGAGACGTTCGACGCCCTCCTGACCGCCCAGCCCTCT
CTGGCCCCCTTCCGCCACACGGGCCTGGAGCGCGCGGGACCTCTAGAGAA
GGACATTGCCTGGTTTGCCGCCACTTACGCAGGGGAAGTGCACGTCCCTC
CCGTCGGCCCGTACGGCCAGGCCTACGCGCAATTTTTGAAGGAGGCCCCA
CGGGAAGGCGAGGCGAAAGAGGAGGGAGTCGAGCAAAGTCCGTTCCAGCA
GTGGGCACCGACGCGACAAGACTACCTCCAGTTCCTCGTCGATTCCAAGC
TGGACTGATGCCTTCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCT
CCATGCTACTCCTACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCC
CTCCCAAACCGGCCCACGGCCACGGCGGCGGTGGACACGGGGGCATGATG
GGCGGTCCCATCGACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGA
GGCCATGCGATTACACACCCGAGAGCAGATGCAGCCTCCTCCCAGCAACA
ACAGCAGCAGCAGCGGCATCAACAACAAGAGCAGGGGCAGCATTAGCACC
AGCAGCAGGAGAAGAGCACTGCGCCTTTTGACCACCACGGCGGCCACCTT
GACGATCGCGAGCTTGGTTGGAAGACGGGCATGAGCTGCACTTCTACCAA
TGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGTT
GGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTGG
GCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACATC
GCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAATTGGCGCCCAAGAG
CCTCCCCGCGCTAATGTGCCATTATTACAATTTCTTCTTCGCCCACACGG
CCGGGGGCCGCATGATCGGGAAGAAAATGTCGTCCGCCCTGCTCGGTATA
CGAGACGTTCGACGCCCTCCTGACCGCCCAGCCCTCTCTGGCCCCCTTCC
GCCACACGGGCCTGGAGCGCGCGGGACCTCTAGAGAAGGACATTGCCTGG
TTTGCCGCCACTTACGCAGGGGAAGTGCACGTCCCTCCCGTCGGCCCGTA
CGGCCAGGCCTACGCGCAATTTTTGAAGGAGGCCCCACGGGAAGGCGAGG
CGAAAGAGGAGGGAGTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACG
CGACAAGACTACCTCCAGTTCCTCGTCGATTCCAAGCTGGACTGATGCCT
TCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCTCCATGCTACTCCT
ACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCCCTCCCAAACCGGC
CCACGGCCACGGCGGCGGTGGACACGGGGGCATGATGGGCGGTCCCATCG
ACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGAGGCCATGCGATTA
CACACCCGAGAGCAGATGCAGCCTCCTCCCAGCAACAACAGCAGCAGCAG
CGGCATCAACAACAAGAGCAGGGGCAGCATTAGCACCAGCAGCAGGAGAA
GAGCACTGCGCCTTTTGACCACCACGGCGGCCACCTTGACGATCGCGAGC
TTGGTTGGAAGACGGGCATGAGCTGCACTTCTACCAATGGGAAGGGAGTG
ACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGTTGGATTCGATGGCG
GCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTGGGCGAGACGAAGAA
CACATTTACCAAGGGAGGCTCCCTCCTCGCGTACATCGCACGGCCGCCCA
ACCAGCGGCCAGAGGTGGCTTAATTGGCGCCCAAGAGCCTCCCCGCGCTA
ATGTGCCATTATTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCAT
GATCGGGAAGAAAATGTCGTCCGCCCTGCTCGGTATACGAGACGTTCGAC
GCCCTCCTGACCGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCT
GGAGCGCGCGGGACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTT
ACGCAGGGGAAGTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTAC
GCGCAATTTTTGAAGGAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGGG
AGTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGACTACC
TCCAGTTCCTCGTCGATTCCAAGCTGGACTGATGCCTTCCTTCCTCCCAT
CCCCTCGTCTACCTCTATCCGTCTCCATGCTACTCCTACAAGCACCTCTT
CCTCCTCGCCCGCTACTGCTGCCCCTCCCAAACCGGCCCACGGCCACGGC
GGCGGTGGACACGGGGGCATGATGGGCGGTCCCATCGACCCCAATTCCTT
CGTTCAAACAGAGCTGAGGAAGGAGGCCATGCGATTACACACCCGAGAGC
AGATGCAGCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAAC
AAGAGCAGGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCT
TTTGACCACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGAC
GGGCATGAGCTGCACTTCTACCAATGGGAAGGGAGTGACGTAAAGGAGAA
GCTGGACGCAGTCCGGCGGTCGTTGGATTCGATGGCGGCAGGCTGGAGCA
GGGAGGAGAAGGACGAGTGTGTGGGCGAGACGAAGAACACATTTACCAAG
GGAGGCTCCCTCCTCGCGTACATCGCACGGCCGCCCAACCAGCGGCCAGA
GGTGGCTTAATTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCCATTATT
ACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGGAAGAAA
ATGTCGTCCGCCCTGCTCGGTATACGAGACGTTCGACGCCCTCCTGACCG
CCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGGAGCGCGCGGGA
CCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTACGCAGGGGAAGT
GCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGCGCAATTTTTGA
AGGAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGGGAGTCGAGCAAAGT
CCGTTCCAGCAGTGGGCACCGACGCGACAAGACTACCTCCAGTTCCTCGT
CGATTCCAAGCTGGACTGATGCCTTCCTTCCTCCCATCCCCTCGTCTACC
TCTATCCGTCTCCATGCTACTCCTACAAGCACCTCTTCCTCCTCGCCCGC
TACTGCTGCCCCTCCCAAACCGGCCCACGGCCACGGCGGCGGTGGACACG
GGGGCATGATGGGCGGTCCCATCGACCCCAATTCCTTCGTTCAAACAGAG
CTGAGGAAGGAGGCCATGCGATTACACACCCGAGAGCAGATGCAGCCTCC
TCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAAGAGCAGGGGCA
GCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTTTGACCACCACG
GCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGACGGGCATGAGCTGC
ACTTCTACCAATGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTC
CGGCGGTCGTTGGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGA
CGAGTGTGTGGGCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCTCC
TCGCGTACATCGCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAATTG
GCGCCCAAGAGCCTCCCCGCGCTAATGTGCCATTATTACAATTTCTTCTT
CGCCCACACGGCCGGGGGCCGCATGATCGGGAAGAAAATGTCGTCCGCCC
TGCTCGGTATACGAGACGTTCGACGCCCTCCTGACCGCCCAGCCCTCTCT
GGCCCCCTTCCGCCACACGGGCCTGGAGCGCGCGGGACCTCTAGAGAAGG
ACATTGCCTGGTTTGCCGCCACTTACGCAGGGGAAGTGCACGTCCCTCCC
GTCGGCCCGTACGGCCAGGCCTACGCGCAATTTTTGAAGGAGGCCCCACG
GGAAGGCGAGGCGAAAGAGGAGGGAGTCGAGCAAAGTCCGTTCCAGCAGT
GGGCACCGACGCGACAAGACTACCTCCAGTTCCTCGTCGATTCCAAGCTG
GACTGATGCCTTCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCTCC
ATGCTACTCCTACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCCCT
CCCAAACCGGCCCACGGCCACGGCGGCGGTGGACACGGGGGCATGATGGG
CGGTCCCATCGACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGAGG
CCATGCGATTACACACCCGAGAGCAGATGCAGCCTCCTCCCAGCAACAAC
AGCAGCAGCAGCGGCATCAACAACAAGAGCAGGGGCAGCATTAGCACCAG
CAGCAGGAGAAGAGCACTGCGCCTTTTGACCACCACGGCGGCCACCTTGA
CGATCGCGAGCTTGGTTGGAAG back to top
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