jgi.p|Nanoce1779_2|574341, mRNA_848 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574341
Unique NamemRNA_848
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length558
Alignment locationscaffold_2:576107..577178 +

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Properties
Property NameValue
TranscriptId574427
TrackFilteredModels2
ProteinId574341
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:576107..577178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574341gene_848Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574341mRNA_848-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_848CDS_848Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_848 ID=mRNA_848|Name=jgi.p|Nanoce1779_2|574341|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
ACAGCAGCTCCCTACTCACCTGGCCGAGGCAACGTGAGGGCCGGAAGCAA
GGAGCAACGCGTGTGTGGGCATCAACAAGCAGCTGCAGCTTCCTATCATC
CTCCATCGCCTCCTTCTCCTTGCCTACCCCGAGACTCCACCGTTAGCATC
ACCAACCCACCATGCCTTTGCTCGCAGGCATAAGCACGGGCTTCCAGCGT
CTCTCGAAATACTTGTCCAAAGCAGCACGGAAACGGCTGCCTTTAAGTCC
GAAGCGGGCAGGTAAAGGGTTCTACAAGGGAAACAAGTGTGCCTCCACGG
GGCGGGTCAACAGCATTGGTCGCTTCAAGCTAGATGAGCGCAAGAGAGTT
GAGCTGAATGTCCCAGACCTGACCGGGTTCAAGCTGAAGCCCTATGTGGC
CCCGACCGTTTTCAAGTACCCCGCCGATGCTGGCATCGCCTGGCCGCCGC
TTACGAAGAAGCCCACATTGTTCGGCATATGACGAGGATGAAGAGGAATG
CGAACAAGAAAACATCAAGAAAGAAAAACGAATGATTTCGAGCAGCACAT
AACAGACG
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protein sequence of jgi.p|Nanoce1779_2|574341

>mRNA_848-protein ID=mRNA_848-protein|Name=jgi.p|Nanoce1779_2|574341|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MPLLAGISTGFQRLSKYLSKAARKRLPLSPKRAGKGFYKGNKCASTGRVN
SIGRFKLDERKRVELNVPDLTGFKLKPYVAPTVFKYPADAGIAWPPLTKK
PTLFGI*
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mRNA from alignment at scaffold_2:576107..577178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_848 ID=mRNA_848|Name=jgi.p|Nanoce1779_2|574341|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp|location=Sequence derived from alignment at scaffold_2:576107..577178+ (Nannochloropsis oceanica)
ACAGCAGCTCCCTACTCACCTGGCCGAGGCAACGTGAGGGCCGGAAGCAA
GGAGCAACGCGTGTGTGGGCATCAACAAGCAGCTGCAGCTTCCTATCATC
CTCCATCGCCTCCTTCTCCTTGCCTACCCCGAGACTCCACCGTTAGCATC
ACCAACCCACCATGCCTTTGCTCGCAGGCATAAGCACGGGCTTCCAGCGT
CTCTCGAAATACTTGTCCAAAGCAGCACGGAAACGGCTGCCTTTAAGTCC
GAAGCGGGCAGGTAAAGGGTTCTACAAGGGAAACAAGTGTGCCTCCACGG
GGCGGGTCAACAGCATTGGTACGTGCATCGGAAGAATTGTTGGATGGAAG
GCTACCAATGGATGAAAGGATAGGAGACACGTTGACTGTATGTGGCTCGC
TTCCTTGAATTTGGGTCACTTTCAAATGCTTTCCTGCCCGGGAAGAGGGC
GCGGTGTTCAAGCAGTAAGCGGGCGGAGACGCCTCTGCCACTATGCTTAT
CGGGTGCCGCATCTTCACGTGAGTCAAATGATCTGCACTGTTTTCAGGAT
GCATGCAGAGCCCTTGTGCATATATTTAATCAATATTCATTCGCATACAA
AAACACACATACAAACACATATAATATATAAATAATTTACATACTGAGAC
ATTTGTATTTATTTCTTCTATCTTCAATAGGTCGCTTCAAGCTAGATGAG
CGCAAGAGAGTTGAGCTGAATGTCCCAGACCTGACCGGGTTCAAGGTACG
TCAATCAAAGGACATGTGATACATGCGTATTTTGGGGTATAAGGCTGCCG
CACGGGGTATGGACCTATAACCGTGACTAAGGAGCTATCCTTTTAATTTT
GATTTTATTTTAATCATGTTTATTTCTCTTTCTCACACCGCTACCAGCTG
AAGCCCTATGTGGCCCCGACCGTTTTCAAGTACCCCGCCGATGCTGGCAT
CGCCTGGCCGCCGCTTACGAAGAAGCCCACATTGTTCGGCATATGACGAG
GATGAAGAGGAATGCGAACAAGAAAACATCAAGAAAGAAAAACGAATGAT
TTCGAGCAGCACATAACAGACG
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Coding sequence (CDS) from alignment at scaffold_2:576107..577178+

>mRNA_848 ID=mRNA_848|Name=jgi.p|Nanoce1779_2|574341|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_2:576107..577178+ (Nannochloropsis oceanica)
ATGCCTTTGCTCGCAGGCATAAGCACGGGCTTCCAGCGTCTCTCGAAATA
CTTGTCCAAAGCAGCACGGAAACGGCTGCCTTTAAGTCCGAAGCGGGCAG
GTAAAGGGTTCTACAAGGGAAACAAGTGTGCCTCCACGGGGCGGGTCAAC
AGCATTGGTCGCTTCAAGCTAGATGAGCGCAAGAGAGTTGAGCTGAATGT
CCCAGACCTGACCGGGTTCAAGCTGAAGCCCTATGTGGCCCCGACCGTTT
TCAAGTACCCCGCCGATGCTGGCATCGCCTGGCCGCCGCTTACGAAGAAG
CCCACATTGTTCGGCATATGAATGCCTTTGCTCGCAGGCATAAGCACGGG
CTTCCAGCGTCTCTCGAAATACTTGTCCAAAGCAGCACGGAAACGGCTGC
CTTTAAGTCCGAAGCGGGCAGGTAAAGGGTTCTACAAGGGAAACAAGTGT
GCCTCCACGGGGCGGGTCAACAGCATTGGTCGCTTCAAGCTAGATGAGCG
CAAGAGAGTTGAGCTGAATGTCCCAGACCTGACCGGGTTCAAGCTGAAGC
CCTATGTGGCCCCGACCGTTTTCAAGTACCCCGCCGATGCTGGCATCGCC
TGGCCGCCGCTTACGAAGAAGCCCACATTGTTCGGCATATGAATGCCTTT
GCTCGCAGGCATAAGCACGGGCTTCCAGCGTCTCTCGAAATACTTGTCCA
AAGCAGCACGGAAACGGCTGCCTTTAAGTCCGAAGCGGGCAGGTAAAGGG
TTCTACAAGGGAAACAAGTGTGCCTCCACGGGGCGGGTCAACAGCATTGG
TCGCTTCAAGCTAGATGAGCGCAAGAGAGTTGAGCTGAATGTCCCAGACC
TGACCGGGTTCAAGCTGAAGCCCTATGTGGCCCCGACCGTTTTCAAGTAC
CCCGCCGATGCTGGCATCGCCTGGCCGCCGCTTACGAAGAAGCCCACATT
GTTCGGCATATGA
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Synonyms
Publications