jgi.p|Nanoce1779_2|602203, mRNA_8479 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602203
Unique NamemRNA_8479
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length364
Alignment locationscaffold_24:405576..406257 -

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Properties
Property NameValue
TranscriptId602289
TrackFilteredModels2
ProteinId602203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:405576..406257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602203gene_8479Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602203mRNA_8479-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8479CDS_8479Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8479 ID=mRNA_8479|Name=jgi.p|Nanoce1779_2|602203|organism=Nannochloropsis oceanica|type=mRNA|length=364bp
TCTTCCCCTTCCTCCCTCGCAACAAGTTTTTTATGTCGTCGCCGTTGCTC
CTCCTCGGCTGCTGCTGCTGCTGCTGCTGCCTCTCTCTTCTTCTCCCTCT
CCCGTCGCTCCTGCAGCTGCTTCTGCTTCCGCTCCAGGAGTTCACGTTCC
ATCTCCTCCCGAGTCGCGGCCTTTTCAGCCTCTTCTTTGATTGCTGCGGC
CCTGGCCTGTCGCTCCTTTTCCTCCTTCGCAATTTTGCCCGCCTCCCAGG
CCGCGTGGGCTTTGGACAGCACGTCTTCACATTCGACTAACCCTTTCTTC
TTTTCGGTCTTGAGCAAGCGCCGCACGAGGCCCAGGGCTGTCTCTGGTGC
GTGAGGGGGTGCGG
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protein sequence of jgi.p|Nanoce1779_2|602203

>mRNA_8479-protein ID=mRNA_8479-protein|Name=jgi.p|Nanoce1779_2|602203|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MSSPLLLLGCCCCCCCLSLLLPLPSLLQLLLLPLQEFTFHLLPSRGLFSL
FFDCCGPGLSLLFLLRNFARLPGRVGFGQHVFTFD*
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mRNA from alignment at scaffold_24:405576..406257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8479 ID=mRNA_8479|Name=jgi.p|Nanoce1779_2|602203|organism=Nannochloropsis oceanica|type=mRNA|length=682bp|location=Sequence derived from alignment at scaffold_24:405576..406257- (Nannochloropsis oceanica)
TCTTCCCCTTCCTCCCTCGCAACAAGTTTTTTATGTCGTCGCCGTTGCTC
CTCCTCGGCTGCTGCTGCTGCTGCTGCTGCCTCTCTCTTCTTCTCCCTCT
CCCGTCGCTCCTGCAGCTGCTTCTGCTTCCGCTCCAGGAGTTCACGTTCC
ATCTGAGGGAGGGTGAGAGGGAGGGAGGGAGGGAGAGGTCAGCGTTGGGG
TATGACTGCTTCTTCTTCTCTTTCTCCACTGCCCAGGCGTGAAGGAAGGG
AAGGGGGGAGGGAGGGAAAAGGGAGGGAAGGAGGGAGGGAGCAACACACC
TCCTCCCGAGTCGCGGCCTTTTCAGCCTCTTCTTTGATTGCTGCGGCCCT
GGCCTGTCGCTCCTTTTCCTCCTTCGCAATTTTGCCCGCCTCCCAGGCCG
CGTGGGCTTTGGACAGCACGTCTTCACATTCGACTAACCCTGAATAGCGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGAGAGGGGTGGGTGG
CTTTATCCATACCTCCCAGGCCGCGGTGCCTTTCGAGGAGGAGACTCCTC
TTGTCCTGAAGGAAGGAAGGGAGGGAGGGAGGGAGCGAGGGAGCGAGGGA
GCGTACAAACCTTTCTTCTTTTCGGTCTTGAGCAAGCGCCGCACGAGGCC
CAGGGCTGTCTCTGGTGCGTGAGGGGGTGCGG
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Coding sequence (CDS) from alignment at scaffold_24:405576..406257-

>mRNA_8479 ID=mRNA_8479|Name=jgi.p|Nanoce1779_2|602203|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_24:405576..406257- (Nannochloropsis oceanica)
CTCCTCCCGAGTCGCGGCCTTTTCAGCCTCTTCTTTGATTGCTGCGGCCC
TGGCCTGTCGCTCCTTTTCCTCCTTCGCAATTTTGCCCGCCTCCCAGGCC
GCGTGGGCTTTGGACAGCACGTCTTCACATTCGACTAAATGTCGTCGCCG
TTGCTCCTCCTCGGCTGCTGCTGCTGCTGCTGCTGCCTCTCTCTTCTTCT
CCCTCTCCCGTCGCTCCTGCAGCTGCTTCTGCTTCCGCTCCAGGAGTTCA
CGTTCCATCTCCTCCCGAGTCGCGGCCTTTTCAGCCTCTTCTTTGATTGC
TGCGGCCCTGGCCTGTCGCTCCTTTTCCTCCTTCGCAATTTTGCCCGCCT
CCCAGGCCGCGTGGGCTTTGGACAGCACGTCTTCACATTCGACTAAATGT
CGTCGCCGTTGCTCCTCCTCGGCTGCTGCTGCTGCTGCTGCTGCCTCTCT
CTTCTTCTCCCTCTCCCGTCGCTCCTGCAGCTGCTTCTGCTTCCGCTCCA
GGAGTTCACGTTCCAT
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Synonyms
Publications