jgi.p|Nanoce1779_2|602202, mRNA_8478 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602202
Unique Name	mRNA_8478
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	570
Alignment location	scaffold_24:404204..405506 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602288
Track	FilteredModels2
ProteinId	602202

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:404204..405506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602202	gene_8478	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602202	mRNA_8478-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8478	CDS_8478	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:404204..405506+
coding sequence from alignment at scaffold_24:404204..405506+

mRNA sequence

>mRNA_8478 ID=mRNA_8478|Name=jgi.p|Nanoce1779_2|602202|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
TGCAGGAGGAGGAGGCGAGAAGGAGGAGGTTGTTCGCCGCCGTCAGGGCT
GGAGAGGTGGACGAGGTCCAGGCGATCTTCGCCTCCTCCCATCCCTCCCT
CCTCTCCTGCGGAGAACGTGAAATGAAGAGAGGAGAAAGCGGCCCCTCTC
TCCTGCATGCCTGTGTCTCCTCTCACTCTTCCTCCCCCTCTTCCTCCTCC
CCTTCCTCCCGCATCGCCCTCATAAACTTACTCCTCTCCCTCGACAAGGA
GGGACGGCTGCCGGACCTCCGCTGGCTTGATGATGACGGGTGCGCTGTCA
TTCATCGAGTAGCTGAGGCCGCAGACATTCCGTTTTTCACCGCCCTTGTA
CAGGCCAAGAAAGAAGGGAGATGGACCGCCGAACGACGGGCGCAGTGGGA
CATGGAGGGCACTTGCTTGTGCTACGGGTGGACCCCTCTTCACTACGCCG
CAGCGGGCGGGCACCCGCAGATGGTATCCCTCCTCCTCGAGCACGGCGCC
CGCCTCTCCACCTTGTCCTTCCTTCCTCCCTCCCTCCGTTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCT

protein sequence of jgi.p|Nanoce1779_2|602202

>mRNA_8478-protein ID=mRNA_8478-protein|Name=jgi.p|Nanoce1779_2|602202|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MKRGESGPSLLHACVSSHSSSPSSSSPSSRIALINLLLSLDKEGRLPDLR
WLDDDGCAVIHRVAEAADIPFFTALVQAKKEGRWTAERRAQWDMEGTCLC
YGWTPLHYAAAGGHPQMVSLLLEHGARLSTLSFLPPSLRSSSSSSSSSS

mRNA from alignment at scaffold_24:404204..405506+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8478 ID=mRNA_8478|Name=jgi.p|Nanoce1779_2|602202|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at scaffold_24:404204..405506+ (Nannochloropsis oceanica)
TGCAGGAGGAGGAGGCGAGAAGGAGGAGGTTGTTCGCCGCCGTCAGGGCT
GGAGAGGTGGACGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGACCAGGGGGGGGACTACTCAACTACATTCATGACACACTTCT
CCCTCCTCTCTCTCTCAAAACCAAGGCAGCTGTCGCGTTCTACTCCCCTT
CCGCGTATCCCTCCTCACTCTCCCACCCTCCCTCCCTCCCTCAGGTCCAG
GCGATCTTCGCCTCCTCCCATCCCTCCCTCCTCTCCTGCGGAGAACGTGA
AATGAAGAGAGGAGAAAGCGGCCCCTCTCTCCTGCATGCCTGTGTCTCCT
CTCACTCTTCCTCCCCCTCTTCCTCCTCCCCTTCCTCCCGCATCGCCCTC
ATAAACTTACTCCTCTCCCTCGACAAGGAGGGACGGCTGCCGGACCTCCG
CTGGCTTGATGATGACGGTGCGCCCTTGCCCTCCCTCCCTCCCTCCCTCC
TTTCCTCCACTGCATGCTACCGCGCGATGTGTTGCCTCCCTGGAATGGCG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTCTTTCCACAATTACTG
ATCCCATTCTCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCAGGGTGCGCTGTCATTCATCGAGTAGCTGAGGCCGCAGACATTCCG
TTTTTCACCGCCCTTGTACAGGTAGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGAAAGAGGGATTGTATTCCTTCGGGTACTCAGGTAGCTGGG
AAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGGAAGGAGG
GAAGGAGGATCGAGTGCAGATTGAGATGTGTGAAGCTTACACTCCTAACC
GTCCCTCCCTCCCTTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCAGGCCA
AGAAAGAAGGGAGATGGACCGCCGAACGACGGGCGCAGTGGGACATGGAG
GGCACTTGCTTGTGCTACGGGTGGACCCCTCTTCACTACGCCGCAGGTAG
GGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCACC
ACCCAGTTATACATCCCGTGTCTCCCATACGTCCACCCACCTTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCAGCGGGCGGGCACCCG
CAGATGGTATCCCTCCTCCTCGAGCACGGCGCCCGCCTCTCCACCTTGTC
CTTCCTTCCTCCCTCCCTCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCT

Coding sequence (CDS) from alignment at scaffold_24:404204..405506+

>mRNA_8478 ID=mRNA_8478|Name=jgi.p|Nanoce1779_2|602202|organism=Nannochloropsis oceanica|type=CDS|length=1792bp|location=Sequence derived from alignment at scaffold_24:404204..405506+ (Nannochloropsis oceanica)
ATGAAGAGAGGAGAAAGCGGCCCCTCTCTCCTGCATGCCTGTGTCTCCTC
TCACTCTTCCTCCCCCTCTTCCTCCTCCCCTTCCTCCCGCATCGCCCTCA
TAAACTTACTCCTCTCCCTCGACAAGGAGGGACGGCTGCCGGACCTCCGC
TGGCTTGATGATGACGGGTGCGCTGTCATTCATCGAGTAGCTGAGGCCGC
AGACATTCCGTTTTTCACCGCCCTTGTACAGGCCAAGAAAGAAGGGAGAT
GGACCGCCGAACGACGGGCGCAGTGGGACATGGAGGGCACTTGCTTGTGC
TACGGGTGGACCCCTCTTCACTACGCCGCAGCGGGCGGGCACCCGCAGAT
GGTATCCCTCCTCCTCGAGCACGGCGCCCGCCTCTCCACCTTGTCCTTCC
TTCCTCCCTCCCTCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTAT
GAAGAGAGGAGAAAGCGGCCCCTCTCTCCTGCATGCCTGTGTCTCCTCTC
ACTCTTCCTCCCCCTCTTCCTCCTCCCCTTCCTCCCGCATCGCCCTCATA
AACTTACTCCTCTCCCTCGACAAGGAGGGACGGCTGCCGGACCTCCGCTG
GCTTGATGATGACGGGTGCGCTGTCATTCATCGAGTAGCTGAGGCCGCAG
ACATTCCGTTTTTCACCGCCCTTGTACAGGCCAAGAAAGAAGGGAGATGG
ACCGCCGAACGACGGGCGCAGTGGGACATGGAGGGCACTTGCTTGTGCTA
CGGGTGGACCCCTCTTCACTACGCCGCAGCGGGCGGGCACCCGCAGATGG
TATCCCTCCTCCTCGAGCACGGCGCCCGCCTCTCCACCTTGTCCTTCCTT
CCTCCCTCCCTCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATGA
AGAGAGGAGAAAGCGGCCCCTCTCTCCTGCATGCCTGTGTCTCCTCTCAC
TCTTCCTCCCCCTCTTCCTCCTCCCCTTCCTCCCGCATCGCCCTCATAAA
CTTACTCCTCTCCCTCGACAAGGAGGGACGGCTGCCGGACCTCCGCTGGC
TTGATGATGACGGGTGCGCTGTCATTCATCGAGTAGCTGAGGCCGCAGAC
ATTCCGTTTTTCACCGCCCTTGTACAGGCCAAGAAAGAAGGGAGATGGAC
CGCCGAACGACGGGCGCAGTGGGACATGGAGGGCACTTGCTTGTGCTACG
GGTGGACCCCTCTTCACTACGCCGCAGCGGGCGGGCACCCGCAGATGGTA
TCCCTCCTCCTCGAGCACGGCGCCCGCCTCTCCACCTTGTCCTTCCTTCC
TCCCTCCCTCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATGAAG
AGAGGAGAAAGCGGCCCCTCTCTCCTGCATGCCTGTGTCTCCTCTCACTC
TTCCTCCCCCTCTTCCTCCTCCCCTTCCTCCCGCATCGCCCTCATAAACT
TACTCCTCTCCCTCGACAAGGAGGGACGGCTGCCGGACCTCCGCTGGCTT
GATGATGACGGGTGCGCTGTCATTCATCGAGTAGCTGAGGCCGCAGACAT
TCCGTTTTTCACCGCCCTTGTACAGGCCAAGAAAGAAGGGAGATGGACCG
CCGAACGACGGGCGCAGTGGGACATGGAGGGCACTTGCTTGTGCTACGGG
TGGACCCCTCTTCACTACGCCGCAGCGGGCGGGCACCCGCAGATGGTATC
CCTCCTCCTCGAGCACGGCGCCCGCCTCTCCACCTTGTCCTTCCTTCCTC
CCTCCCTCCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT

Synonyms

Publications