jgi.p|Nanoce1779_2|602193, mRNA_8477 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602193
Unique NamemRNA_8477
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_24:397409..400380 -

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Properties
Property NameValue
TranscriptId602279
TrackFilteredModels2
ProteinId602193
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:397409..400380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602193gene_8477Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602193mRNA_8477-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8477CDS_8477Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8477 ID=mRNA_8477|Name=jgi.p|Nanoce1779_2|602193|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
CTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTGCGATCCGCGTGCTAGCC
TCTCCCTCCTCGCGCAATCATGGGCTGCCTTCGCCTTTTTCTACCCTTTG
GAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGAAGGGAGGGAGGAAAGGA
GGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGCAC
CAGCCTACGTGACCGAGACCCAGTTCCTCCTGAAGCGCCTCCGACTTCTA
CAAAGGTCCTCCTCCTCCTCTTCCCCCTCCCCTTCCTCCATCTCCTACCC
CTCCCACAGCGAGGAGGAGACCGTGGAGCACGTCAGAGAAAAATTGAATG
TCCTCATGGCGGCCTCTCCCATCACAGCCTTACGAAGGCGCCTCACGACC
TTCCTCTCCTCCCTCTTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCAT
TCACCTCGCGGAGGCAAGCGCCGGGTTGCACACCCTCCCCCCCGACAGTT
TCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCCAACCTT
TCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGGAGGGAG
GGCTGGAAGGGGGGTTAGTCCTTCCCTCCTTCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|602193

>mRNA_8477-protein ID=mRNA_8477-protein|Name=jgi.p|Nanoce1779_2|602193|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MGCLRLFLPFGSPLSLLGRGRKGGRKGGRRKRRRRRRRRGRKSTSLRDRD
PVPPEAPPTSTKVLLLLFPLPFLHLLPLPQRGGDRGARQRKIECPHGGLS
HHSLTKAPHDLPLLPLPASLPAWREKHSPRGGKRRVAHPPPRQFPPHNPS
PDRARLPLQPFAPRAGGRGAGREGGREGWKGG*
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mRNA from alignment at scaffold_24:397409..400380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8477 ID=mRNA_8477|Name=jgi.p|Nanoce1779_2|602193|organism=Nannochloropsis oceanica|type=mRNA|length=2972bp|location=Sequence derived from alignment at scaffold_24:397409..400380- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTGCGATCCGCGTGCTAGCC
TCTCCCTCCTCGCGCAATCATGGGCTGCCTTCGCCTTTTTCTACCCTTTG
GAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGAAGGGAGGGAGGAAAGGA
GGGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGCAC
CAGCCTACGTGACCGAGGTGAGCCAAGGGGTGAAGGAGGGAATCGTGTAA
GGCGGGAGGTAGGTAGGAAGGGAGGAAGAGAGAAAAAAGTGCACACAATC
AGAGTAACCTTCATTTGAATATTTAATATTTAAAATTTGAAAAACAGACC
CAGTTCCTCCTGAAGCGCCTCCGACTTCTACAAAGGTCCTCCTCCTCCTC
TTCCCCCTCCCCTTCCTCCATCTCCTACCCCTCCCACAGCGAGGAGGAGA
CCGTGGAGCACGTCAGAGAAAAATTGAATGTCCTCATGGCGGCCTCTCCC
ATCACAGCCTTACGAAGGTACGTGACCCGTCCTCTCTATCTCCTTCCCTC
CCTCCCTCCTTCCCTCTTATCCAGGTCGCTCAATGCCCCCTTGCCCCCCC
CCCTTTCCTCCCTCTCTCCCTACCTCTTCAGGCGCCTCACGACCTTCCTC
TCCTCCCTCTTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCATTCACCT
CGCGGAGGCAAGCGCCGGGTTGCACACCCTCCCCCCCGTGAGCCCCCCTT
CCTTTCCCCCCCCATCCCTTCTCTTCTCTCATTTTTTCCCCCTCCCTCTC
TGTGTCTCATTCGTTAACATGTCCTTTCCTCCCTCCCTTCCTCCCTCCCT
CCCTCCCTCTCACCCTATATGCTTCTCATTCATATATCCCTCCCTCCCTT
CCTCCCTCCCTTCCTTCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTTAG
GACAGTTTCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTC
CAACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGG
GAGGGAGGGCTGGAAGGGGGGTTAGCGTTATCTATGATGGGCATGTGGTG
TGGAAGGTGAGGAGGGGAGGGAGGGAGGGAAGGGAGGGAGGGGAAAATCA
CCATCAGTTCTATCGCCACTTGAGCCTCTGTTTTTTTCGGCCCTCTCTCC
CTCCCTCCCTCAGGACCAGCACCTCCCTCCCTCCCTCCTTCCCATCCTCT
ATGGCGTTGTCCGTGCGCGCGACGAGTGCAACAACCACAACAACATCAAC
AACAACAACAACAACAACAACAACAACAACAACGATAGCAGTAGGCACAA
GGATAACACTTTCTCCCTCCCTCCCTCCCTTCTTTCCTCTCTGTCACCTC
TTCCTTCTCCTCCTCCTCCTTCGACTGCTGCCGCTAATGCGACTTCGGCG
GCTGCCGCTAGAGGGAGGGAGGGAGGGAGCGACGGAGGGAGGGACGGAGG
GCTGATGGAGAGAATACAATCTTTTGCCGCAAGGGCCAGCAGCCCATCCC
TTCCTCCCTCTTATCCTCCTCCTCCCCCCCCACCCTCCTCTACTCTCCCA
ACGGAAGCGCCTTTCCTCGCCTCCTCTTCCTCTTCCTCTTCTTCTTCCAC
CTCTCCTCCCCTCTCTGATTCACCTCTTCCTCCTCCCCCCCCCCCTGGCG
GCTTCCTAGACATCGACCAGCCCTTCTCCCTCCTCCCTCTTTGCTCCCCT
CCCTCCTTCCCTCCCTCCTTCCCTCTCTCCGGCACGAAACGCCTCTCCCT
TTACCTCGCCGAGAAACTCACACTCCTCATCACGTTTGACGAGGAGGAAG
GGGAGGAGCAGGGGAAGGAGGGCAGGGAGGGTGGGAGGGAGGGATGGAGG
GCCTTCCTGTTGCGATTGGTGAGGGAGATGGAGGGATACTTGCTACCGCA
GCTGCGGCTCCTTCAGCCCTACTTCCCAAGAGGGGGGGAGGTAAGGCGGC
ACAAGGGAGGGCGGGAAGGAGGGCAGGAGGGCGGGAGGGAGGGAAGGGTG
GCCGACAGAAGATTGGCATCGATGCCCACGACGCGAAAATTTTCTCTCTT
CCTTCATTCCCTCCCTCCCTCCCTCCCTCCTTCCTTTCTTCCCTACCTCC
TTCTATTCTTCCCACCCTTCCTTTTTCTTATAGCTTTCGACTCTGAATTT
GCAGCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGTCCGCACCGAGCAAGG
GGGGAGGGGAGGTCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGC
GGGAGGGAGGGCGGGAGGGAAGGCGGGGTGCTCTTCTACAGGGATCGCAT
GACCCATTCCGTGTCCGTGGCCGTGGGAAAGGACGGTGAGAAGGGAGGGA
GGGAGGGAGGGAAGGAGAGACGAAGAGGTGGTAGAAAGACAATCTGAACA
CACAAGAATACCGTCGACTGAACTCCCCTCTCTGTACCTCCCGCCCTATA
CTGCCCTCCCACTCTCCCCTCCCGCCCACCTCCCTCCCTTCCTTCCTCCC
TTCCTTCCTCCCTCCCTCCCTCCATCCATCCATCCAGACCATCCCCACCA
GGACCAGCAGTGCTGGCCTCCTTCCACAGCCGATGCCCTTCTCTCCCTCT
CCTACCGCGGCAACCACCCTCCCTCCTTCTCTTCCTCCCTCCCGCCCTCC
TCCCATCCCTCCCTCCTGGCCTTGATGGATGATCACTACTTTGCGCAGGA
AGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGACGGACGGACACCCAAGCT
CATCCCCCTCCCTCCCTTCCTCTCTCCATTTCTCCAGCCCTCCCTCCTGC
CCGCCTTCCACCAATCATTTCTCCGTCTGTCGAACGGCGGCTGGGCTCTC
TCTCGGTCCACACCCGAGCGTCAGGTCTTCGCCTTTCTCTACCCTCCTTC
CTCCTTCCCTCCTTCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_24:397409..400380-

>mRNA_8477 ID=mRNA_8477|Name=jgi.p|Nanoce1779_2|602193|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_24:397409..400380- (Nannochloropsis oceanica)
GACAGTTTCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTC
CAACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGG
GAGGGAGGGCTGGAAGGGGGGTTAGGCGCCTCACGACCTTCCTCTCCTCC
CTCTTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCATTCACCTCGCGGA
GGCAAGCGCCGGGTTGCACACCCTCCCCCCCACCCAGTTCCTCCTGAAGC
GCCTCCGACTTCTACAAAGGTCCTCCTCCTCCTCTTCCCCCTCCCCTTCC
TCCATCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGTCAG
AGAAAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTACGAA
GATGGGCTGCCTTCGCCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTAC
TGGGAAGAGGGAGGAAGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGG
AGGAGGAGGAGGAGGAGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGG
ACAGTTTCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCC
AACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGG
AGGGAGGGCTGGAAGGGGGGTTAGGCGCCTCACGACCTTCCTCTCCTCCC
TCTTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCATTCACCTCGCGGAG
GCAAGCGCCGGGTTGCACACCCTCCCCCCCACCCAGTTCCTCCTGAAGCG
CCTCCGACTTCTACAAAGGTCCTCCTCCTCCTCTTCCCCCTCCCCTTCCT
CCATCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGTCAGA
GAAAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTACGAAG
ATGGGCTGCCTTCGCCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACT
GGGAAGAGGGAGGAAGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGA
GGAGGAGGAGGAGGAGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGGA
CAGTTTCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCCA
ACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGGA
GGGAGGGCTGGAAGGGGGGTTAGGCGCCTCACGACCTTCCTCTCCTCCCT
CTTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCATTCACCTCGCGGAGG
CAAGCGCCGGGTTGCACACCCTCCCCCCCACCCAGTTCCTCCTGAAGCGC
CTCCGACTTCTACAAAGGTCCTCCTCCTCCTCTTCCCCCTCCCCTTCCTC
CATCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGTCAGAG
AAAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTACGAAGA
TGGGCTGCCTTCGCCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTG
GGAAGAGGGAGGAAGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGGAC
AGTTTCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCCAA
CCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGGAG
GGAGGGCTGGAAGGGGGGTTAGGCGCCTCACGACCTTCCTCTCCTCCCTC
TTCCTGCATCGCTTCCTGCATGGAGGGAAAAGCATTCACCTCGCGGAGGC
AAGCGCCGGGTTGCACACCCTCCCCCCCACCCAGTTCCTCCTGAAGCGCC
TCCGACTTCTACAAAGGTCCTCCTCCTCCTCTTCCCCCTCCCCTTCCTCC
ATCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGTCAGAGA
AAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTACGAAGAT
GGGCTGCCTTCGCCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTGG
GAAGAGGGAGGAAGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAAGAGCACCAGCCTACGTGACCGAG
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Synonyms
Publications