jgi.p|Nanoce1779_2|602170, mRNA_8473 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602170
Unique NamemRNA_8473
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length566
Alignment locationscaffold_24:380304..380869 -

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Properties
Property NameValue
TranscriptId602256
TrackFilteredModels2
ProteinId602170
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:380304..380869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602170gene_8473Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602170mRNA_8473-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8473CDS_8473Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8473 ID=mRNA_8473|Name=jgi.p|Nanoce1779_2|602170|organism=Nannochloropsis oceanica|type=mRNA|length=566bp
CAAATGCACAGCTAAGGAGAGAAGCCTTATGGAAATCCACAGAGAAAGAC
GAAGATCTGCTCTTCGCCGAATGGTGAAAGCCCATCCATGATCACCAAGC
GCAGCCCAAACGATGGACAAAGTCCTATTGCTGCGCCCCACGGAAAGAGT
TCAGCAATGCACTAGAGGCACGCGGCCCACGCAATACTTCCCCCAAAACC
CTTCCCCGGTCCTCGCCGCCTTCCCCTTCGCTCCTGTCCCCACTTTCGAA
TCTCCCGCAAATTTCGAGAAACTATGCCCGGACATGCTCTTCTTCATTTT
TAACTACCAGCAGGGGACGTACCAATAGTATCTCGCTGCCAATCTGTTAA
AAAAACAGTCGAGGCGTTACCACAAGATGTGCATGACCTGGTTTCAGTGG
CGTGAGGAGCCGGAAGTTGCGACGGAAGAATATGAGCAGGGGACGTATGT
CTACTACACATTGATTTTGGCCGGCTAAACAGTCGCAAAAAAGTAGGCCC
TGAACATAAAGATTGTGAGTGTACTACATATAAGTAATGAGTACAATATA
AAAAAATAAATACATG
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protein sequence of jgi.p|Nanoce1779_2|602170

>mRNA_8473-protein ID=mRNA_8473-protein|Name=jgi.p|Nanoce1779_2|602170|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MDKVLLLRPTERVQQCTRGTRPTQYFPQNPSPVLAAFPFAPVPTFESPAN
FEKLCPDMLFFIFNYQQGTYQ*
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mRNA from alignment at scaffold_24:380304..380869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8473 ID=mRNA_8473|Name=jgi.p|Nanoce1779_2|602170|organism=Nannochloropsis oceanica|type=mRNA|length=566bp|location=Sequence derived from alignment at scaffold_24:380304..380869- (Nannochloropsis oceanica)
CAAATGCACAGCTAAGGAGAGAAGCCTTATGGAAATCCACAGAGAAAGAC
GAAGATCTGCTCTTCGCCGAATGGTGAAAGCCCATCCATGATCACCAAGC
GCAGCCCAAACGATGGACAAAGTCCTATTGCTGCGCCCCACGGAAAGAGT
TCAGCAATGCACTAGAGGCACGCGGCCCACGCAATACTTCCCCCAAAACC
CTTCCCCGGTCCTCGCCGCCTTCCCCTTCGCTCCTGTCCCCACTTTCGAA
TCTCCCGCAAATTTCGAGAAACTATGCCCGGACATGCTCTTCTTCATTTT
TAACTACCAGCAGGGGACGTACCAATAGTATCTCGCTGCCAATCTGTTAA
AAAAACAGTCGAGGCGTTACCACAAGATGTGCATGACCTGGTTTCAGTGG
CGTGAGGAGCCGGAAGTTGCGACGGAAGAATATGAGCAGGGGACGTATGT
CTACTACACATTGATTTTGGCCGGCTAAACAGTCGCAAAAAAGTAGGCCC
TGAACATAAAGATTGTGAGTGTACTACATATAAGTAATGAGTACAATATA
AAAAAATAAATACATG
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Coding sequence (CDS) from alignment at scaffold_24:380304..380869-

>mRNA_8473 ID=mRNA_8473|Name=jgi.p|Nanoce1779_2|602170|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_24:380304..380869- (Nannochloropsis oceanica)
ATGGACAAAGTCCTATTGCTGCGCCCCACGGAAAGAGTTCAGCAATGCAC
TAGAGGCACGCGGCCCACGCAATACTTCCCCCAAAACCCTTCCCCGGTCC
TCGCCGCCTTCCCCTTCGCTCCTGTCCCCACTTTCGAATCTCCCGCAAAT
TTCGAGAAACTATGCCCGGACATGCTCTTCTTCATTTTTAACTACCAGCA
GGGGACGTACCAATAG
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Synonyms
Publications