jgi.p|Nanoce1779_2|532427, mRNA_8472 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532427
Unique NamemRNA_8472
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length150
Alignment locationscaffold_24:380392..380541 -

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Properties
Property NameValue
TranscriptId532513
TrackFilteredModels2
ProteinId532427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:380392..380541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532427gene_8472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8472CDS_8472Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532427mRNA_8472-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8472 ID=mRNA_8472|Name=jgi.p|Nanoce1779_2|532427|organism=Nannochloropsis oceanica|type=mRNA|length=150bp
TATCTCGCTGCCAATCTGTTAAAAAAACAGTCGAGGCGTTACCACAAGAT
GTGCATGACCTGGTTTCAGTGGCGTGAGGAGCCGGAAGTTGCGACGGAAG
AATATGAGCAGGGGACGTATGTCTACTACACATTGATTTTGGCCGGCTAA
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protein sequence of jgi.p|Nanoce1779_2|532427

>mRNA_8472-protein ID=mRNA_8472-protein|Name=jgi.p|Nanoce1779_2|532427|organism=Nannochloropsis oceanica|type=polypeptide|length=50bp
YLAANLLKKQSRRYHKMCMTWFQWREEPEVATEEYEQGTYVYYTLILAG*
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mRNA from alignment at scaffold_24:380392..380541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8472 ID=mRNA_8472|Name=jgi.p|Nanoce1779_2|532427|organism=Nannochloropsis oceanica|type=mRNA|length=150bp|location=Sequence derived from alignment at scaffold_24:380392..380541- (Nannochloropsis oceanica)
TATCTCGCTGCCAATCTGTTAAAAAAACAGTCGAGGCGTTACCACAAGAT
GTGCATGACCTGGTTTCAGTGGCGTGAGGAGCCGGAAGTTGCGACGGAAG
AATATGAGCAGGGGACGTATGTCTACTACACATTGATTTTGGCCGGCTAA
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Coding sequence (CDS) from alignment at scaffold_24:380392..380541-

>mRNA_8472 ID=mRNA_8472|Name=jgi.p|Nanoce1779_2|532427|organism=Nannochloropsis oceanica|type=CDS|length=150bp|location=Sequence derived from alignment at scaffold_24:380392..380541- (Nannochloropsis oceanica)
TATCTCGCTGCCAATCTGTTAAAAAAACAGTCGAGGCGTTACCACAAGAT
GTGCATGACCTGGTTTCAGTGGCGTGAGGAGCCGGAAGTTGCGACGGAAG
AATATGAGCAGGGGACGTATGTCTACTACACATTGATTTTGGCCGGCTAA
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Synonyms
Publications