jgi.p|Nanoce1779_2|636141, mRNA_847 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636141
Unique NamemRNA_847
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1053
Alignment locationscaffold_2:574347..575527 -

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Properties
Property NameValue
TranscriptId636227
TrackFilteredModels2
ProteinId636141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:574347..575527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636141gene_847Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636141mRNA_847-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_847CDS_847Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_847 ID=mRNA_847|Name=jgi.p|Nanoce1779_2|636141|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
ATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCCCGC
TTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCTCCG
AGGACATATTTTTTCTTGAACAGGCTCAAACATTTGTCAACGTCAGCGTC
AACATCCGATCGACCATCATCCGTCTCAAGAACGGCAAGCTCTTCGTGCA
CGCCCCCGTCGCCCCAACAGCCGAGTGCATTTCCCTCCTCAAAGACTTGG
GGGAGGTTGCTTATGTGGTTTTACCCGTCACGGCGGTGGAGCACAAGGTG
TACATGGCGAGCTTTGTTGCCCAGTTTCCGAAAGCAAAAGTCTATGTTGC
TCCCGGTCAGTTTAGCTGGCCGTTGAATTTACCCCTTGGGTTTCGGGTGG
ATGGGATTCTGACGGATGAAAATAAGGAAATGATGCCTTTTAAGGACGAA
ATTGATTACACTGGCTGGTTCTTCAGGCCCTTCACAGGCTCGATAAGCGA
AGTGGCGTTTTTCCATAAGAAGACCAAGACATTGCTCGTCACTGACGCTG
TCATTTGGATCGATAATGCCCCCCCAGAGATCCTCAAACAGAAGGGAATC
GCGCCGAATGTGTGGAAAAAGATGGCTTTGCAAGCCTGCTTTCTTGGCCC
TCCCAACCTCGATACCTTTGAAGAGATAAAGCAAAAACTGATTGTTTCCC
CTGTCATTCGTATTTTGGTCGTATCGCGGGCGAAGAGGGAGGTGAGGGAT
TGGATTGCCAGAGTGTGTCGGTGGAATTTCGAGAGGATTATCCCTGCTCA
TTTCTCGGCGCCGATCAAAGCGGGGCCTAAAGACTTGAGGGATGCATATT
CCTTCTTGGAGGAGGAGGAAGGAAAGGAGGGAGCGAATGTTGCGGCGTCA
CCATCACCGGCATTTGGGTTTGATTTGTCAGCGTTTAATCTGGGTGGAGT
TACGGGGAAGGGGCGGAAGAGGACGGTTGTGTTTCCGGAGAAGGATACCA
AGATTTTGGACGCGCTGAATAAGTTCGTTAGTGCGACGGGCTTAGCCGAC
TAA
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protein sequence of jgi.p|Nanoce1779_2|636141

>mRNA_847-protein ID=mRNA_847-protein|Name=jgi.p|Nanoce1779_2|636141|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPGTQPAGLGSKVFLPAFLPPWIARDTVRTQVSEDIFFLEQAQTFVNVSV
NIRSTIIRLKNGKLFVHAPVAPTAECISLLKDLGEVAYVVLPVTAVEHKV
YMASFVAQFPKAKVYVAPGQFSWPLNLPLGFRVDGILTDENKEMMPFKDE
IDYTGWFFRPFTGSISEVAFFHKKTKTLLVTDAVIWIDNAPPEILKQKGI
APNVWKKMALQACFLGPPNLDTFEEIKQKLIVSPVIRILVVSRAKREVRD
WIARVCRWNFERIIPAHFSAPIKAGPKDLRDAYSFLEEEEGKEGANVAAS
PSPAFGFDLSAFNLGGVTGKGRKRTVVFPEKDTKILDALNKFVSATGLAD
*
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mRNA from alignment at scaffold_2:574347..575527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_847 ID=mRNA_847|Name=jgi.p|Nanoce1779_2|636141|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp|location=Sequence derived from alignment at scaffold_2:574347..575527- (Nannochloropsis oceanica)
ATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCCCGC
TTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCTCCG
AGGACATATTTTTTCTTGAACAGGTATGTCCTCACACCCTTTCACTTCCT
CCCCTTCTTCCTCCTCCAGATGGCTTTTTGTCATATCGAATTAAATAGGA
ATGGAAATTTTTGAATTCAGTGCATCCCTCCTCCCCTCCTCCCTCCCCTA
GGCTCAAACATTTGTCAACGTCAGCGTCAACATCCGATCGACCATCATCC
GTCTCAAGAACGGCAAGCTCTTCGTGCACGCCCCCGTCGCCCCAACAGCC
GAGTGCATTTCCCTCCTCAAAGACTTGGGGGAGGTTGCTTATGTGGTTTT
ACCCGTCACGGCGGTGGAGCACAAGGTGTACATGGCGAGCTTTGTTGCCC
AGTTTCCGAAAGCAAAAGTCTATGTTGCTCCCGGTCAGTTTAGCTGGCCG
TTGAATTTACCCCTTGGGTTTCGGGTGGATGGGATTCTGACGGATGAAAA
TAAGGAAATGATGCCTTTTAAGGACGAAATTGATTACACTGGCTGGTTCT
TCAGGCCCTTCACAGGCTCGATAAGCGAAGTGGCGTTTTTCCATAAGAAG
ACCAAGACATTGCTCGTCACTGACGCTGTCATTTGGATCGATAATGCCCC
CCCAGAGATCCTCAAACAGAAGGGAATCGCGCCGAATGTGTGGAAAAAGA
TGGCTTTGCAAGCCTGCTTTCTTGGCCCTCCCAACCTCGATACCTTTGAA
GAGATAAAGCAAAAACTGATTGTTTCCCCTGTCATTCGTATTTTGGTCGT
ATCGCGGGCGAAGAGGGAGGTGAGGGATTGGATTGCCAGAGTGTGTCGGT
GGAATTTCGAGAGGATTATCCCTGCTCATTTCTCGGCGCCGATCAAAGCG
GGGCCTAAAGACTTGAGGGATGCATATTCCTTCTTGGAGGAGGAGGAAGG
AAAGGAGGGAGCGAATGTTGCGGCGTCACCATCACCGGCATTTGGGTTTG
ATTTGTCAGCGTTTAATCTGGGTGGAGTTACGGGGAAGGGGCGGAAGAGG
ACGGTTGTGTTTCCGGAGAAGGATACCAAGATTTTGGACGCGCTGAATAA
GTTCGTTAGTGCGACGGGCTTAGCCGACTAA
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Coding sequence (CDS) from alignment at scaffold_2:574347..575527-

>mRNA_847 ID=mRNA_847|Name=jgi.p|Nanoce1779_2|636141|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_2:574347..575527- (Nannochloropsis oceanica)
GCTCAAACATTTGTCAACGTCAGCGTCAACATCCGATCGACCATCATCCG
TCTCAAGAACGGCAAGCTCTTCGTGCACGCCCCCGTCGCCCCAACAGCCG
AGTGCATTTCCCTCCTCAAAGACTTGGGGGAGGTTGCTTATGTGGTTTTA
CCCGTCACGGCGGTGGAGCACAAGGTGTACATGGCGAGCTTTGTTGCCCA
GTTTCCGAAAGCAAAAGTCTATGTTGCTCCCGGTCAGTTTAGCTGGCCGT
TGAATTTACCCCTTGGGTTTCGGGTGGATGGGATTCTGACGGATGAAAAT
AAGGAAATGATGCCTTTTAAGGACGAAATTGATTACACTGGCTGGTTCTT
CAGGCCCTTCACAGGCTCGATAAGCGAAGTGGCGTTTTTCCATAAGAAGA
CCAAGACATTGCTCGTCACTGACGCTGTCATTTGGATCGATAATGCCCCC
CCAGAGATCCTCAAACAGAAGGGAATCGCGCCGAATGTGTGGAAAAAGAT
GGCTTTGCAAGCCTGCTTTCTTGGCCCTCCCAACCTCGATACCTTTGAAG
AGATAAAGCAAAAACTGATTGTTTCCCCTGTCATTCGTATTTTGGTCGTA
TCGCGGGCGAAGAGGGAGGTGAGGGATTGGATTGCCAGAGTGTGTCGGTG
GAATTTCGAGAGGATTATCCCTGCTCATTTCTCGGCGCCGATCAAAGCGG
GGCCTAAAGACTTGAGGGATGCATATTCCTTCTTGGAGGAGGAGGAAGGA
AAGGAGGGAGCGAATGTTGCGGCGTCACCATCACCGGCATTTGGGTTTGA
TTTGTCAGCGTTTAATCTGGGTGGAGTTACGGGGAAGGGGCGGAAGAGGA
CGGTTGTGTTTCCGGAGAAGGATACCAAGATTTTGGACGCGCTGAATAAG
TTCGTTAGTGCGACGGGCTTAGCCGACTAAATGCCCGGCACACAGCCCGC
GGGGTTGGGTTCTAAAGTCTTCCTTCCCGCTTTTCTACCGCCCTGGATTG
CGCGTGACACCGTTCGGACACAAGTCTCCGAGGACATATTTTTTCTTGAA
CAGGCTCAAACATTTGTCAACGTCAGCGTCAACATCCGATCGACCATCAT
CCGTCTCAAGAACGGCAAGCTCTTCGTGCACGCCCCCGTCGCCCCAACAG
CCGAGTGCATTTCCCTCCTCAAAGACTTGGGGGAGGTTGCTTATGTGGTT
TTACCCGTCACGGCGGTGGAGCACAAGGTGTACATGGCGAGCTTTGTTGC
CCAGTTTCCGAAAGCAAAAGTCTATGTTGCTCCCGGTCAGTTTAGCTGGC
CGTTGAATTTACCCCTTGGGTTTCGGGTGGATGGGATTCTGACGGATGAA
AATAAGGAAATGATGCCTTTTAAGGACGAAATTGATTACACTGGCTGGTT
CTTCAGGCCCTTCACAGGCTCGATAAGCGAAGTGGCGTTTTTCCATAAGA
AGACCAAGACATTGCTCGTCACTGACGCTGTCATTTGGATCGATAATGCC
CCCCCAGAGATCCTCAAACAGAAGGGAATCGCGCCGAATGTGTGGAAAAA
GATGGCTTTGCAAGCCTGCTTTCTTGGCCCTCCCAACCTCGATACCTTTG
AAGAGATAAAGCAAAAACTGATTGTTTCCCCTGTCATTCGTATTTTGGTC
GTATCGCGGGCGAAGAGGGAGGTGAGGGATTGGATTGCCAGAGTGTGTCG
GTGGAATTTCGAGAGGATTATCCCTGCTCATTTCTCGGCGCCGATCAAAG
CGGGGCCTAAAGACTTGAGGGATGCATATTCCTTCTTGGAGGAGGAGGAA
GGAAAGGAGGGAGCGAATGTTGCGGCGTCACCATCACCGGCATTTGGGTT
TGATTTGTCAGCGTTTAATCTGGGTGGAGTTACGGGGAAGGGGCGGAAGA
GGACGGTTGTGTTTCCGGAGAAGGATACCAAGATTTTGGACGCGCTGAAT
AAGTTCGTTAGTGCGACGGGCTTAGCCGACTAAATGCCCGGCACACAGCC
CGCGGGGTTGGGTTCTAAAGTCTTCCTTCCCGCTTTTCTACCGCCCTGGA
TTGCGCGTGACACCGTTCGGACACAAGTCTCCGAGGACATATTTTTTCTT
GAACAG
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Synonyms
Publications