jgi.p|Nanoce1779_2|197335, mRNA_8466 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197335
Unique NamemRNA_8466
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length933
Alignment locationscaffold_24:355022..356187 +

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Properties
Property NameValue
TranscriptId197421
TrackFilteredModels2
ProteinId197335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:355022..356187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197335gene_8466Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197335mRNA_8466-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8466CDS_8466Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8466 ID=mRNA_8466|Name=jgi.p|Nanoce1779_2|197335|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
CTCCCTCCCTTCCTCCCCCTTCCTCTTCGGCGGCGGCTGCTGATTCCAAC
AGCACCAGCATTCCCTCCCTTCCCTCCCCCCCTCTACCCTCTTTCCCTTC
CCCGCCGTGGCAGACTATGGGCGACGTTTCATCCGTCGTGTCCTCCCTGC
AGGCCTCGCCCTCCCTCCTCGAGAAAGAAATAATGGAAAACCGTTCCCGG
CCCGTCATTACCGCCCTGCGACGATTCTGCTGCTGGGTGCGTGGAGACTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCATCCTGGGGAAGGAGGATGAGG
AGGAGATGCTGCATGAGGGGGAGGGTGGGGGCGAGGGAGGGTTGGGAAAG
GAAGTGCAGGCGGGCTTGTTGAAATACATTGGGAGAGTAAGTGGAATACA
GGATTCTACCCGAAGAGACTACGTGATGAAATGCGATGGGATATTAGCGA
TCTTATTGGAGAGAGTGATGAGGCGGGAAGGAAGGGGAGGGGGCAAGAGA
TTTGCGGGGGATGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGACAGGGAGCAGGGAGGGAAAGAGGGCGGAGTGTTCTGGAGACGAAGG
AGGAGGTGGTGGAGTTTTACAAGGCAAACGAGCAGATCTTTTTAGATTAT
ATGCAGAACTTGGGCGCGGCGTCGCAGGATCGAGCGAAGCGGTCGGCTTT
GAGGTACCTAATAAACTACTTAGGCCTTGATCAAATGCAGAACATATGGG
CGCGGGGCTCCTCCGCTGTCTCTGTTGGGACAGCAGCCGCAACAACAAGA
GGAGGAGGGGGGGGGGGGTAGCGGCCGAGGGAGTAGTGAGGAGGAGGACG
AGGAGGACGAGGAGGACGAGGAAGAAGACGAGAGGTCGGTGTCCTCTGAC
TCCGACATCGAGGAGGAAGAGGAGAGGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|197335

>mRNA_8466-protein ID=mRNA_8466-protein|Name=jgi.p|Nanoce1779_2|197335|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MGDVSSVVSSLQASPSLLEKEIMENRSRPVITALRRFCCWVRGDSLPPSL
PPSLILGKEDEEEMLHEGEGGGEGGLGKEVQAGLLKYIGRVSGIQDSTRR
DYVMKCDGILAILLERVMRREGRGGGKRFAGDGEGGGGGGGGRGGGQGAG
RERGRSVLETKEEVVEFYKANEQIFLDYMQNLGAASQDRAKRSALRYLIN
YLGLDQMQNIWARGSSAVSVGTAAATTRGGGGGG*
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mRNA from alignment at scaffold_24:355022..356187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8466 ID=mRNA_8466|Name=jgi.p|Nanoce1779_2|197335|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp|location=Sequence derived from alignment at scaffold_24:355022..356187+ (Nannochloropsis oceanica)
CTCCCTCCCTTCCTCCCCCTTCCTCTTCGGCGGCGGCTGCTGATTCCAAC
AGCACCAGCATTCCCTCCCTTCCCTCCCCCCCTCTACCCTCTTTCCCTTC
CCCGCCGTGGCAGACTATGGGCGACGTTTCATCCGTCGTGTCCTCCCTGC
AGGCCTCGCCCTCCCTCCTCGAGAAAGAAATAATGGAAAACCGTTCCCGG
CCCGTCATTACCGCCCTGCGACGATTCTGCTGCTGGGTGCGTGGAGACTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCATCCTGGGGAAGGAGGATGAGG
AGGAGATGCTGCATGAGGGGGAGGGTGGGGGCGAGGGAGGGTTGGGAAAG
GAAGTGCAGGCGGGCTTGTTGAAATACATTGGGAGAGTAAGTGGAATACA
GGATTCTACCCGAAGAGACTACGTGATGAAATGCGATGGGATATTAGCGA
TCTTATTGGAGAGAGTGATGAGGCGGGAAGGAAGGGGAGGGGGCAAGAGA
TTTGCGGGGGATGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGACAGGGAGCAGGGAGGGAAAGAGGGCGGAGTGTTCTGGAGACGAAGG
AGGAGGTGGTGGAGTTTTACAAGGCAAACGAGCAGATCTTTTTAGATTAT
ATGCAGAACTTGGGCGCGGCGTCGCAGGATCGAGCGAAGGTAGGTAGATA
GGGAGGGGGGAATGAGGGAGGGAGGGAGGGAGGGAAGGAAGGACAGGACG
GACTTATGTTCGTATACGACGTGCTCACACACAGCTGTCTTTCTATGCAT
CGAAAGTAGGAAAATTATTACATCCTTGAGAAATGATAACCGAATAAGGA
TACTACCACACAGTAATTAAATAATAAATTAATAAGCTCAATGATAAGAA
ATACCACCATGCACACACACAGCGGTCGGCTTTGAGGTACCTAATAAACT
ACTTAGGCCTTGATCAAATGCAGAACATATGGGCGCGGGGCTCCTCCGCT
GTCTCTGTTGGGACAGCAGCCGCAACAACAAGAGGAGGAGGGGGGGGGGG
GTAGCGGCCGAGGGAGTAGTGAGGAGGAGGACGAGGAGGACGAGGAGGAC
GAGGAAGAAGACGAGAGGTCGGTGTCCTCTGACTCCGACATCGAGGAGGA
AGAGGAGAGGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_24:355022..356187+

>mRNA_8466 ID=mRNA_8466|Name=jgi.p|Nanoce1779_2|197335|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_24:355022..356187+ (Nannochloropsis oceanica)
ATGGGCGACGTTTCATCCGTCGTGTCCTCCCTGCAGGCCTCGCCCTCCCT
CCTCGAGAAAGAAATAATGGAAAACCGTTCCCGGCCCGTCATTACCGCCC
TGCGACGATTCTGCTGCTGGGTGCGTGGAGACTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCATCCTGGGGAAGGAGGATGAGGAGGAGATGCTGCATGA
GGGGGAGGGTGGGGGCGAGGGAGGGTTGGGAAAGGAAGTGCAGGCGGGCT
TGTTGAAATACATTGGGAGAGTAAGTGGAATACAGGATTCTACCCGAAGA
GACTACGTGATGAAATGCGATGGGATATTAGCGATCTTATTGGAGAGAGT
GATGAGGCGGGAAGGAAGGGGAGGGGGCAAGAGATTTGCGGGGGATGGAG
AGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGACAGGGAGCAGGG
AGGGAAAGAGGGCGGAGTGTTCTGGAGACGAAGGAGGAGGTGGTGGAGTT
TTACAAGGCAAACGAGCAGATCTTTTTAGATTATATGCAGAACTTGGGCG
CGGCGTCGCAGGATCGAGCGAAGCGGTCGGCTTTGAGGTACCTAATAAAC
TACTTAGGCCTTGATCAAATGCAGAACATATGGGCGCGGGGCTCCTCCGC
TGTCTCTGTTGGGACAGCAGCCGCAACAACAAGAGGAGGAGGGGGGGGGG
GGTAGATGGGCGACGTTTCATCCGTCGTGTCCTCCCTGCAGGCCTCGCCC
TCCCTCCTCGAGAAAGAAATAATGGAAAACCGTTCCCGGCCCGTCATTAC
CGCCCTGCGACGATTCTGCTGCTGGGTGCGTGGAGACTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCATCCTGGGGAAGGAGGATGAGGAGGAGATGCTG
CATGAGGGGGAGGGTGGGGGCGAGGGAGGGTTGGGAAAGGAAGTGCAGGC
GGGCTTGTTGAAATACATTGGGAGAGTAAGTGGAATACAGGATTCTACCC
GAAGAGACTACGTGATGAAATGCGATGGGATATTAGCGATCTTATTGGAG
AGAGTGATGAGGCGGGAAGGAAGGGGAGGGGGCAAGAGATTTGCGGGGGA
TGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGACAGGGAG
CAGGGAGGGAAAGAGGGCGGAGTGTTCTGGAGACGAAGGAGGAGGTGGTG
GAGTTTTACAAGGCAAACGAGCAGATCTTTTTAGATTATATGCAGAACTT
GGGCGCGGCGTCGCAGGATCGAGCGAAGCGGTCGGCTTTGAGGTACCTAA
TAAACTACTTAGGCCTTGATCAAATGCAGAACATATGGGCGCGGGGCTCC
TCCGCTGTCTCTGTTGGGACAGCAGCCGCAACAACAAGAGGAGGAGGGGG
GGGGGGGTAG
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Synonyms
Publications