jgi.p|Nanoce1779_2|602139, mRNA_8464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602139
Unique NamemRNA_8464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length513
Alignment locationscaffold_24:353218..353730 -

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Properties
Property NameValue
TranscriptId602225
TrackFilteredModels2
ProteinId602139
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:353218..353730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602139gene_8464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602139mRNA_8464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8464CDS_8464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8464 ID=mRNA_8464|Name=jgi.p|Nanoce1779_2|602139|organism=Nannochloropsis oceanica|type=mRNA|length=513bp
CGTAAGATGCCTTCCGGGTTCGGAGCCATTGCCGCCACCCATCTTCTCCT
TCCATTCCTGTCTCCTTCCCTCCCTCCTCCTTCTCTTACGAAGTCACCTT
GTACCAACTTCACCCGTGCGGTCCTCTCCTTCCTCAACTGCTCCTCCATC
TCTGCCTCCTTCTTTACGGCCGCCTCTCGCACCCGGCGTATCTCTTCTTC
TAACCTTCCAACAGACCGTTTTCGAGCCTCTTCAGATTCGAACAGCTTTC
GCTCGATTTGAACTTTTGAATGGTCAGCGGCCGAGACCAGGCGGACGCGG
TCCTCTTCCACTTTCCGACACCAGGCTTTAGCAGTGGCGGCGTGGTCCTG
AAGGGATCGAAGCTCCGTGTCTTTGTTGGTGAGGTGGGCACGCAGGACAG
TGAGCTCATTGGCGGTGCTTGAAGGGGAAGAGGAGGAGGAAGAGGAGGAG
GCTGCGAGGTGGTCTCGGAGGGTTTGGAGCTCAATTGTTTTTTGATGGAG
CGCTTCTTCTTTC
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protein sequence of jgi.p|Nanoce1779_2|602139

>mRNA_8464-protein ID=mRNA_8464-protein|Name=jgi.p|Nanoce1779_2|602139|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MPSGFGAIAATHLLLPFLSPSLPPPSLTKSPCTNFTRAVLSFLNCSSISA
SFFTAASRTRRISSSNLPTDRFRASSDSNSFRSI*
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mRNA from alignment at scaffold_24:353218..353730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8464 ID=mRNA_8464|Name=jgi.p|Nanoce1779_2|602139|organism=Nannochloropsis oceanica|type=mRNA|length=513bp|location=Sequence derived from alignment at scaffold_24:353218..353730- (Nannochloropsis oceanica)
CGTAAGATGCCTTCCGGGTTCGGAGCCATTGCCGCCACCCATCTTCTCCT
TCCATTCCTGTCTCCTTCCCTCCCTCCTCCTTCTCTTACGAAGTCACCTT
GTACCAACTTCACCCGTGCGGTCCTCTCCTTCCTCAACTGCTCCTCCATC
TCTGCCTCCTTCTTTACGGCCGCCTCTCGCACCCGGCGTATCTCTTCTTC
TAACCTTCCAACAGACCGTTTTCGAGCCTCTTCAGATTCGAACAGCTTTC
GCTCGATTTGAACTTTTGAATGGTCAGCGGCCGAGACCAGGCGGACGCGG
TCCTCTTCCACTTTCCGACACCAGGCTTTAGCAGTGGCGGCGTGGTCCTG
AAGGGATCGAAGCTCCGTGTCTTTGTTGGTGAGGTGGGCACGCAGGACAG
TGAGCTCATTGGCGGTGCTTGAAGGGGAAGAGGAGGAGGAAGAGGAGGAG
GCTGCGAGGTGGTCTCGGAGGGTTTGGAGCTCAATTGTTTTTTGATGGAG
CGCTTCTTCTTTC
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Coding sequence (CDS) from alignment at scaffold_24:353218..353730-

>mRNA_8464 ID=mRNA_8464|Name=jgi.p|Nanoce1779_2|602139|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_24:353218..353730- (Nannochloropsis oceanica)
ATGCCTTCCGGGTTCGGAGCCATTGCCGCCACCCATCTTCTCCTTCCATT
CCTGTCTCCTTCCCTCCCTCCTCCTTCTCTTACGAAGTCACCTTGTACCA
ACTTCACCCGTGCGGTCCTCTCCTTCCTCAACTGCTCCTCCATCTCTGCC
TCCTTCTTTACGGCCGCCTCTCGCACCCGGCGTATCTCTTCTTCTAACCT
TCCAACAGACCGTTTTCGAGCCTCTTCAGATTCGAACAGCTTTCGCTCGA
TTTGA
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Synonyms
Publications