jgi.p|Nanoce1779_2|655844, mRNA_8463 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|655844
Unique NamemRNA_8463
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1637
Alignment locationscaffold_24:349337..351243 -

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Properties
Property NameValue
TranscriptId655930
TrackFilteredModels2
ProteinId655844
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:349337..351243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655844gene_8463Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655844mRNA_8463-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8463CDS_8463Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8463 ID=mRNA_8463|Name=jgi.p|Nanoce1779_2|655844|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
GGAAATGGTTGCCGCTTGACACGTTTACCACGCACAGAGTACTCCGGACG
ACCCCAAAGGCATCAAAACACACACCATACGTTAAAAACATATGGATGCT
ACTCTTCTGGATTCAAGCAGAAGTTTTCGAAAAAGGCTTCGTCTCCTCCG
GCCCATCTTTCTGGCCCAGGAAAAGAGCGGGTCGTCTTTGCCGCGCACAT
CGCGTACACGAAAAGCATGCGACATAACGCACAGGAGAAAATGATGCGAA
CATTCTGTTTTACGCGTTCGAGGGAATATGAAGAAGAGCTTGAAGCAGTT
GCAACCCAGGTAAAATACCTGGAGCAGCAGCACCGATCAGAGTTGGCTAG
TTTTCGACAGAAACTGGAAGAGCAGTGGCAGGAACAGCAATCCAATAAGT
GGAAGGCGTTACCCTACGCGGGCACGTGGACAGTGGAATTGACAGGAGGG
AATTACGTGCATTGCACCCCAATCTTCAACCTGGGAGGCCTCTGGTTTCG
CTTAGTGCTGACTGAGAAGATAGCACAAAATTGCAAAGGCCCTATTCGAG
GGAAATATTCGCCAAGGGTGGAAGCAAGGGAGGGCGAGGGCGGGCGACCT
GTTGGGGTATTCGTTGAGTATTTGCCATCATCCAGCACCGGAGAAGGAGG
AGCAGCAGCAACAGCAGTGCCTTGCTTGCGGTGTCGCTTCGAGCTGCTCA
ATGACTTGAAGGAAAATTGTCAGATTGAGAAGGAGGAAGGGGAGTTGGCG
GAGTGTGAGTCAGAGCCTACATTTCTGAATGCCGCCGGAGGAGCTTTAGG
TGTCCCTCACTTCACGGACGTCTGCGACCACCCTCCTCCTCCCCTTCCTC
TTCCTCTTTCTCGCTTTCAACAGCTACAACAGCCAGAAGGACAAGAGCAG
CAGCCATCAAAAGTACTTGTCGGATTTGAGATTTCTCTATGCGCCGTAAA
GTTTTTAAGTGTTACTGAACAAGCGCAAGCTATGAGGGAGGCATGGGTGA
GGACGGAGGCAGCAGTGGAGGAACAGGTGAGAGCCGTTCTGGTGAAGGAG
GAGGAAAGCAGGGTTACCGCGGAGTTGCATGTGAGAGAAGCCGGAGAATG
GAGGGAAAGGGTGGACATGAGGTTCTTTGACGAAGGAGGGAGCGGTAGAA
GAGGCGGTGGAAAGAGTGGTGAGGAGGAGAAACTTTTTGTGGAGGATGAC
AGCGATGAAGAAAGCGACGATGACGATGAGAACAGGAAGTAGAAAAAGGA
TGCAAACGATGAGAAAGAGAAGCGTGAAGAGAAGGAAGGATTACGGACAG
GCGCGTGTAATGACGATAAGCGTCATCGTGAGAATACGGTTGGCAGGGAG
GCAGAGGGAGAAGAGGAGGTGAAACACACGAACAAGGGCGAGGAGGAGGA
CGACGAGGACGAGGACGGGATAGAAGAATAATATTAATGGATATTAATGA
ATAGACAAGAAAATCGAAGGTGACGAGGACGTGAATAAACAATAGGAAAA
GATGAAGGGAGCGTGATAAGTGATAGACCAATAGTGCGAAAAATTAAAGA
CCCCGCTTCAGACAAGAGAAGAAAACAAGTAGGACATCGAAGGAGGGAAA
TGAAGTAGCCGAGGAAAGTAATGCAAGGAATAGCGCG
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protein sequence of jgi.p|Nanoce1779_2|655844

>mRNA_8463-protein ID=mRNA_8463-protein|Name=jgi.p|Nanoce1779_2|655844|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
GNGCRLTRLPRTEYSGRPQRHQNTHHTLKTYGCYSSGFKQKFSKKASSPP
AHLSGPGKERVVFAAHIAYTKSMRHNAQEKMMRTFCFTRSREYEEELEAV
ATQVKYLEQQHRSELASFRQKLEEQWQEQQSNKWKALPYAGTWTVELTGG
NYVHCTPIFNLGGLWFRLVLTEKIAQNCKGPIRGKYSPRVEAREGEGGRP
VGVFVEYLPSSSTGEGGAAATAVPCLRCRFELLNDLKENCQIEKEEGELA
ECESEPTFLNAAGGALGVPHFTDVCDHPPPPLPLPLSRFQQLQQPEGQEQ
QPSKVLVGFEISLCAVKFLSVTEQAQAMREAWVRTEAAVEEQVRAVLVKE
EESRVTAELHVREAGEWRERVDMRFFDEGGSGRRGGGKSGEEEKLFVEDD
SDEESDDDDENRK*
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mRNA from alignment at scaffold_24:349337..351243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8463 ID=mRNA_8463|Name=jgi.p|Nanoce1779_2|655844|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp|location=Sequence derived from alignment at scaffold_24:349337..351243- (Nannochloropsis oceanica)
GGAAATGGTTGCCGCTTGACACGTTTACCACGCACAGAGTACTCCGGACG
ACCCCAAAGGCATCAAAACACACACCATACGTTAAAAACATATGGATGCT
ACTCTTCTGGATTCAAGCAGAAGTTTTCGAAAAAGGCTTCGTCTCCTCCG
GCCCATCTTTCTGGCCCAGGAAAAGAGCGGGTCGTCTTTGCCGCGCACAT
CGCGTACACGAAAAGCATGCGACATAACGCACAGGAGAAAATGATGCGAA
CATTCTGTTTTACGTATGCCTGATAAGCCAATACCTCATTTGTTACATCT
TCAGATATGAATTCCCCAGAACGCTGCCGTCGTCGCCTCTTCTCCTCAAT
ACTCCTACTTTTTCTTGAGCTCATATTTCCCAAACCCACAACGAGCTTCC
TCCCTGCTCCGCTGCACAGCCGCAACAGTTGCAGCACTCTTTATCAAAGC
GTTTCCCCCAATCAACAAAACGACCGCTCCGAAGCAAGCGCGCCAACATC
CTTGTGGCAGCGCCTTTTCCAATCCACACCCAGGCGTTCGAGGGAATATG
AAGAAGAGCTTGAAGCAGTTGCAACCCAGGTAAAATACCTGGAGCAGCAG
CACCGATCAGAGTTGGCTAGTTTTCGACAGAAACTGGAAGAGCAGTGGCA
GGAACAGCAATCCAATAAGTGGAAGGCGTTACCCTACGCGGGCACGTGGA
CAGTGGAATTGACAGGAGGGAATTACGTGCATTGCACCCCAATCTTCAAC
CTGGGAGGCCTCTGGTTTCGCTTAGTGCTGACTGAGAAGATAGCACAAAA
TTGCAAAGGCCCTATTCGAGGGAAATATTCGCCAAGGGTGGAAGCAAGGG
AGGGCGAGGGCGGGCGACCTGTTGGGGTATTCGTTGAGTATTTGCCATCA
TCCAGCACCGGAGAAGGAGGAGCAGCAGCAACAGCAGTGCCTTGCTTGCG
GTGTCGCTTCGAGCTGCTCAATGACTTGAAGGAAAATTGTCAGATTGAGA
AGGAGGAAGGGGAGTTGGCGGAGTGTGAGTCAGAGCCTACATTTCTGAAT
GCCGCCGGAGGAGCTTTAGGTGTCCCTCACTTCACGGACGTCTGCGACCA
CCCTCCTCCTCCCCTTCCTCTTCCTCTTTCTCGCTTTCAACAGCTACAAC
AGCCAGAAGGACAAGAGCAGCAGCCATCAAAAGTACTTGTCGGATTTGAG
ATTTCTCTATGCGCCGTAAAGTTTTTAAGTGTTACTGAACAAGCGCAAGC
TATGAGGGAGGCATGGGTGAGGACGGAGGCAGCAGTGGAGGAACAGGTGA
GAGCCGTTCTGGTGAAGGAGGAGGAAAGCAGGGTTACCGCGGAGTTGCAT
GTGAGAGAAGCCGGAGAATGGAGGGAAAGGGTGGACATGAGGTTCTTTGA
CGAAGGAGGGAGCGGTAGAAGAGGCGGTGGAAAGAGTGGTGAGGAGGAGA
AACTTTTTGTGGAGGATGACAGCGATGAAGAAAGCGACGATGACGATGAG
AACAGGAAGTAGAAAAAGGATGCAAACGATGAGAAAGAGAAGCGTGAAGA
GAAGGAAGGATTACGGACAGGCGCGTGTAATGACGATAAGCGTCATCGTG
AGAATACGGTTGGCAGGGAGGCAGAGGGAGAAGAGGAGGTGAAACACACG
AACAAGGGCGAGGAGGAGGACGACGAGGACGAGGACGGGATAGAAGAATA
ATATTAATGGATATTAATGAATAGACAAGAAAATCGAAGGTGACGAGGAC
GTGAATAAACAATAGGAAAAGATGAAGGGAGCGTGATAAGTGATAGACCA
ATAGTGCGAAAAATTAAAGACCCCGCTTCAGACAAGAGAAGAAAACAAGT
AGGACATCGAAGGAGGGAAATGAAGTAGCCGAGGAAAGTAATGCAAGGAA
TAGCGCG
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Coding sequence (CDS) from alignment at scaffold_24:349337..351243-

>mRNA_8463 ID=mRNA_8463|Name=jgi.p|Nanoce1779_2|655844|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_24:349337..351243- (Nannochloropsis oceanica)
GCGTTCGAGGGAATATGAAGAAGAGCTTGAAGCAGTTGCAACCCAGGTAA
AATACCTGGAGCAGCAGCACCGATCAGAGTTGGCTAGTTTTCGACAGAAA
CTGGAAGAGCAGTGGCAGGAACAGCAATCCAATAAGTGGAAGGCGTTACC
CTACGCGGGCACGTGGACAGTGGAATTGACAGGAGGGAATTACGTGCATT
GCACCCCAATCTTCAACCTGGGAGGCCTCTGGTTTCGCTTAGTGCTGACT
GAGAAGATAGCACAAAATTGCAAAGGCCCTATTCGAGGGAAATATTCGCC
AAGGGTGGAAGCAAGGGAGGGCGAGGGCGGGCGACCTGTTGGGGTATTCG
TTGAGTATTTGCCATCATCCAGCACCGGAGAAGGAGGAGCAGCAGCAACA
GCAGTGCCTTGCTTGCGGTGTCGCTTCGAGCTGCTCAATGACTTGAAGGA
AAATTGTCAGATTGAGAAGGAGGAAGGGGAGTTGGCGGAGTGTGAGTCAG
AGCCTACATTTCTGAATGCCGCCGGAGGAGCTTTAGGTGTCCCTCACTTC
ACGGACGTCTGCGACCACCCTCCTCCTCCCCTTCCTCTTCCTCTTTCTCG
CTTTCAACAGCTACAACAGCCAGAAGGACAAGAGCAGCAGCCATCAAAAG
TACTTGTCGGATTTGAGATTTCTCTATGCGCCGTAAAGTTTTTAAGTGTT
ACTGAACAAGCGCAAGCTATGAGGGAGGCATGGGTGAGGACGGAGGCAGC
AGTGGAGGAACAGGTGAGAGCCGTTCTGGTGAAGGAGGAGGAAAGCAGGG
TTACCGCGGAGTTGCATGTGAGAGAAGCCGGAGAATGGAGGGAAAGGGTG
GACATGAGGTTCTTTGACGAAGGAGGGAGCGGTAGAAGAGGCGGTGGAAA
GAGTGGTGAGGAGGAGAAACTTTTTGTGGAGGATGACAGCGATGAAGAAA
GCGACGATGACGATGAGAACAGGAAGTAGGGAAATGGTTGCCGCTTGACA
CGTTTACCACGCACAGAGTACTCCGGACGACCCCAAAGGCATCAAAACAC
ACACCATACGTTAAAAACATATGGATGCTACTCTTCTGGATTCAAGCAGA
AGTTTTCGAAAAAGGCTTCGTCTCCTCCGGCCCATCTTTCTGGCCCAGGA
AAAGAGCGGGTCGTCTTTGCCGCGCACATCGCGTACACGAAAAGCATGCG
ACATAACGCACAGGAGAAAATGATGCGAACATTCTGTTTTACGCGTTCGA
GGGAATATGAAGAAGAGCTTGAAGCAGTTGCAACCCAGGTAAAATACCTG
GAGCAGCAGCACCGATCAGAGTTGGCTAGTTTTCGACAGAAACTGGAAGA
GCAGTGGCAGGAACAGCAATCCAATAAGTGGAAGGCGTTACCCTACGCGG
GCACGTGGACAGTGGAATTGACAGGAGGGAATTACGTGCATTGCACCCCA
ATCTTCAACCTGGGAGGCCTCTGGTTTCGCTTAGTGCTGACTGAGAAGAT
AGCACAAAATTGCAAAGGCCCTATTCGAGGGAAATATTCGCCAAGGGTGG
AAGCAAGGGAGGGCGAGGGCGGGCGACCTGTTGGGGTATTCGTTGAGTAT
TTGCCATCATCCAGCACCGGAGAAGGAGGAGCAGCAGCAACAGCAGTGCC
TTGCTTGCGGTGTCGCTTCGAGCTGCTCAATGACTTGAAGGAAAATTGTC
AGATTGAGAAGGAGGAAGGGGAGTTGGCGGAGTGTGAGTCAGAGCCTACA
TTTCTGAATGCCGCCGGAGGAGCTTTAGGTGTCCCTCACTTCACGGACGT
CTGCGACCACCCTCCTCCTCCCCTTCCTCTTCCTCTTTCTCGCTTTCAAC
AGCTACAACAGCCAGAAGGACAAGAGCAGCAGCCATCAAAAGTACTTGTC
GGATTTGAGATTTCTCTATGCGCCGTAAAGTTTTTAAGTGTTACTGAACA
AGCGCAAGCTATGAGGGAGGCATGGGTGAGGACGGAGGCAGCAGTGGAGG
AACAGGTGAGAGCCGTTCTGGTGAAGGAGGAGGAAAGCAGGGTTACCGCG
GAGTTGCATGTGAGAGAAGCCGGAGAATGGAGGGAAAGGGTGGACATGAG
GTTCTTTGACGAAGGAGGGAGCGGTAGAAGAGGCGGTGGAAAGAGTGGTG
AGGAGGAGAAACTTTTTGTGGAGGATGACAGCGATGAAGAAAGCGACGAT
GACGATGAGAACAGGAAGTAGGGAAATGGTTGCCGCTTGACACGTTTACC
ACGCACAGAGTACTCCGGACGACCCCAAAGGCATCAAAACACACACCATA
CGTTAAAAACATATGGATGCTACTCTTCTGGATTCAAGCAGAAGTTTTCG
AAAAAGGCTTCGTCTCCTCCGGCCCATCTTTCTGGCCCAGGAAAAGAGCG
GGTCGTCTTTGCCGCGCACATCGCGTACACGAAAAGCATGCGACATAACG
CACAGGAGAAAATGATGCGAACATTCTGTTTTAC
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Synonyms
Publications