jgi.p|Nanoce1779_2|546186, mRNA_8461 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|546186
Unique NamemRNA_8461
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length520
Alignment locationscaffold_24:341175..342400 +

Link to JBrowse

Properties
Property NameValue
TranscriptId546272
TrackFilteredModels2
ProteinId546186
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:341175..342400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546186gene_8461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546186mRNA_8461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8461CDS_8461Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8461 ID=mRNA_8461|Name=jgi.p|Nanoce1779_2|546186|organism=Nannochloropsis oceanica|type=mRNA|length=520bp
CCTCCTACAGTCTCCGCCTCCTCAAAACCTGCCGACCCCTATCTGCAGCA
GCAGCGGCAGCAGCAACAACAGCAGGAGGAGCAGCAGCAGCAGTACCACC
ACTACCAGTTTTCAGCTTACGATTCCTACCCAGGAGGAGGGGACGAAGGA
GGTAGCAACAGTAGCAGCAGCAGCAGTAGAGGTGGAGGAATGGACAGCAG
CAGCATGCTCATGAATGAGATGATGCACTTGCCAAGTAGTAGCAACAGAA
AAAAGGCTGCCAACAAGATCTTCGTCGGGGGCCTCCATTGGGAGACGACA
GACGAAAAACTCCGCAAGCACTTCAACATCTTCGGAGAGGTCATCGATGC
CGTGGTCATGAAGGACCCCATATCCAGAAGATCCCGTGGCTTTGGGTTCA
TCACCTTTGCGGACGCAGCCGCCGTCGACCGGGTCTTGTCCCAAGACAAC
CACATACTGGACTCGAGAAGAGTGGAGGCCAAGCGCGCCGTGCCTCGTTC
AGAGACTCTCCTGAAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|546186

>mRNA_8461-protein ID=mRNA_8461-protein|Name=jgi.p|Nanoce1779_2|546186|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MDSSSMLMNEMMHLPSSSNRKKAANKIFVGGLHWETTDEKLRKHFNIFGE
VIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRA
VPRSETLLKE
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mRNA from alignment at scaffold_24:341175..342400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8461 ID=mRNA_8461|Name=jgi.p|Nanoce1779_2|546186|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_24:341175..342400+ (Nannochloropsis oceanica)
CCTCCTACAGTCTCCGCCTCCTCAAAACCTGCCGACCCCTATCTGCAGCA
GCAGCGGCAGCAGCAACAACAGCAGGAGGAGCAGCAGCAGCAGTACCACC
ACTACCAGTTTTCAGCTTACGATTCCTACCCAGGAGGAGGGGACGAAGGA
GGTAGCAACAGTAGCAGCAGCAGCAGTAGAGGTGGAGGAATGGACAGCAG
CAGCATGCTCATGAATGAGATGATGCACTTGCCAAGGTAAGGTGGAAGAC
GGGAGTGTGGTAGGGGTGGGTATGACCAAGTGAATGTTGGAGTAGTAGTA
GCAGCAGCAGCAGCAGCAGCAGCAGCGCAAGGGGAAGAGAAGGACGACGA
CGAAATGAAAGCTGGGAGGACAGAGGGGGGAGGGAGTGAGGAACGGGGAT
GGTCCTGCTTCTCCTGGGCCGACTGAGTCGCCTTCATGGTGATGGGGCAG
TCTATATTAAGTGAGGAAGGAAGAGAGGGAAGGAAGGGCGGTTTCGAGGG
GATAGCAGCAGCAGCGGAGGACGAGAAGGAGAAGAGGGTTAGGGATAGAC
AGAGAGCAGGTGTGACACCCCTATAAAAGTGTCCTCACATTCTCTCTATC
CCTCCCTCCCGCCCCCCCTCGCTCCCTCCTACCCTTCCCACAGTAGTAGC
AACAGAAAAAAGGCTGCCAACAAGATCTTCGTCGGGGGCCTCCATTGGGA
GACGACAGACGGTGCGTCCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTT
CCCTGCACCGCCCTCCGTTTGTCTTCTCCCCCCCACTCTCCTCTATCCAC
TCTTTCCCATCACCATTGCCTAGGCATGACCTGATCTCTTTCCCTCCCTC
CCCCCCCCCCACACAGAAAAACTCCGCAAGCACTTCAACATCTTCGGAGA
GGTCATCGATGCCGTGGTCATGAAGGACCCCATATCCAGAAGGTAAGTCC
CTCCCTCCCTCCCTTCCTACCCCCTCCCTCCATTCCTCCTCATCCCCGTG
TCCGCCTGGCCGAGCCCGTCGTTCGGATGACCCTCATCTCTCCCCCCCCC
CCCGCCCCCCCAATATGCTGACCCCTCCCTCCCTAGATCCCGTGGCTTTG
GGTTCATCACCTTTGCGGACGCAGCCGCCGTCGACCGGGTCTTGTCCCAA
GACAACCACATACTGGACTCGAGAAGAGTGGAGGCCAAGCGCGCCGTGCC
TCGTTCAGAGACTCTCCTGAAGGAGG
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Coding sequence (CDS) from alignment at scaffold_24:341175..342400+

>mRNA_8461 ID=mRNA_8461|Name=jgi.p|Nanoce1779_2|546186|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_24:341175..342400+ (Nannochloropsis oceanica)
ATGGACAGCAGCAGCATGCTCATGAATGAGATGATGCACTTGCCAAGTAG
TAGCAACAGAAAAAAGGCTGCCAACAAGATCTTCGTCGGGGGCCTCCATT
GGGAGACGACAGACGAAAAACTCCGCAAGCACTTCAACATCTTCGGAGAG
GTCATCGATGCCGTGGTCATGAAGGACCCCATATCCAGAAGATCCCGTGG
CTTTGGGTTCATCACCTTTGCGGACGCAGCCGCCGTCGACCGGGTCTTGT
CCCAAGACAACCACATACTGGACTCGAGAAGAGTGGAGGCCAAGCGCGCC
GTGCCTCGTTCAGAGACTCTCCTGAAGGAGATGGACAGCAGCAGCATGCT
CATGAATGAGATGATGCACTTGCCAAGTAGTAGCAACAGAAAAAAGGCTG
CCAACAAGATCTTCGTCGGGGGCCTCCATTGGGAGACGACAGACGAAAAA
CTCCGCAAGCACTTCAACATCTTCGGAGAGGTCATCGATGCCGTGGTCAT
GAAGGACCCCATATCCAGAAGATCCCGTGGCTTTGGGTTCATCACCTTTG
CGGACGCAGCCGCCGTCGACCGGGTCTTGTCCCAAGACAACCACATACTG
GACTCGAGAAGAGTGGAGGCCAAGCGCGCCGTGCCTCGTTCAGAGACTCT
CCTGAAGGAGATGGACAGCAGCAGCATGCTCATGAATGAGATGATGCACT
TGCCAAGTAGTAGCAACAGAAAAAAGGCTGCCAACAAGATCTTCGTCGGG
GGCCTCCATTGGGAGACGACAGACGAAAAACTCCGCAAGCACTTCAACAT
CTTCGGAGAGGTCATCGATGCCGTGGTCATGAAGGACCCCATATCCAGAA
GATCCCGTGGCTTTGGGTTCATCACCTTTGCGGACGCAGCCGCCGTCGAC
CGGGTCTTGTCCCAAGACAACCACATACTGGACTCGAGAAGAGTGGAGGC
CAAGCGCGCCGTGCCTCGTTCAGAGACTCTCCTGAAGGAGATGGACAGCA
GCAGCATGCTCATGAATGAGATGATGCACTTGCCAAGTAGTAGCAACAGA
AAAAAGGCTGCCAACAAGATCTTCGTCGGGGGCCTCCATTGGGAGACGAC
AGACGAAAAACTCCGCAAGCACTTCAACATCTTCGGAGAGGTCATCGATG
CCGTGGTCATGAAGGACCCCATATCCAGAAGATCCCGTGGCTTTGGGTTC
ATCACCTTTGCGGACGCAGCCGCCGTCGACCGGGTCTTGTCCCAAGACAA
CCACATACTGGACTCGAGAAGAGTGGAGGCCAAGCGCGCCGTGCCTCGTT
CAGAGACTCTCCTGAAGGAG
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Synonyms
Publications