jgi.p|Nanoce1779_2|197175, mRNA_8460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197175
Unique NamemRNA_8460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length552
Alignment locationscaffold_24:338855..339602 -

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Properties
Property NameValue
TranscriptId197261
TrackFilteredModels2
ProteinId197175
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:338855..339602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197175gene_8460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197175mRNA_8460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8460CDS_8460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8460 ID=mRNA_8460|Name=jgi.p|Nanoce1779_2|197175|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
GGCAGATTGAAACAAGAGATTTTAATCTTCTTTTTTCCTTTATCTCTGCA
CATGTAACAACGTTTTCGTGACGAGTTCAGGAAAGAGAACCTCTACTCCT
CCTTCCCTCTCCCTCCATGTCGTCCGCCCTCCTAAACCCCACCAACTTGG
CAGACACTCAAATGCAAACGAATCCGTAAATGACACACGTCTCTCTTTTC
CTCGCTGGGTGTCCTCTACCCATTACCTTCGCTCACTTCCATAACCAAAA
TGATCCCCTCTCGAATCCTTTTCTCCCTCCCTTCCTCCCTCCCTCCCTCC
CTCCTTCCTACTTCCCCTGCTCCTTCATCATTCTTTCCACGCGCCATCGG
AAAAATGGGTTCTTTTTCGCTTTGGCTAGCAACGAGTTGAATTCACTGGC
TTCAAACCCATTTTTGTTGGCGATTTCTTCGGCTTGCAAAGGGAATTTGA
GACACAAATTTTGAACCTTGCTGTTAAGCCATGTGATTATGCTCCGCGCG
CAAGGCTTCGATTTCCCTTAAGCTTTTAGCGAAGAGGGCCACCCGCTGGG
GC
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protein sequence of jgi.p|Nanoce1779_2|197175

>mRNA_8460-protein ID=mRNA_8460-protein|Name=jgi.p|Nanoce1779_2|197175|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MTHVSLFLAGCPLPITFAHFHNQNDPLSNPFLPPFLPPSLPPSYFPCSFI
ILSTRHRKNGFFFALASNELNSLASNPFLLAISSACKGNLRHKF*
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mRNA from alignment at scaffold_24:338855..339602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8460 ID=mRNA_8460|Name=jgi.p|Nanoce1779_2|197175|organism=Nannochloropsis oceanica|type=mRNA|length=748bp|location=Sequence derived from alignment at scaffold_24:338855..339602- (Nannochloropsis oceanica)
GGCAGATTGAAACAAGAGATTTTAATCTTCTTTTTTCCTTTATCTCTGCA
CATGTAACAACGTTTTCGTGACGAGTTCAGGAAAGAGAACCTCTACTCCT
CCTTCCCTCTCCCTCCATGTCGTCCGCCCTCCTAAACCCCACCAACTTGG
CAGACACTCAAATGCAAACGAATCCGTAAATGACACACGTCTCTCTTTTC
CTCGCTGGGTGTCCTCTACCCATTACCTTCGCTCACTTCCATAACCAAAA
TGATCCCCTCTCGAATCCTTTTCTCCCTCCCTTCCTCCCTCCCTCCCTCC
CTCCTTCCTACTTCCCCTGCTCCTTCATCATTCTTTCCACGCGCCATCGG
AAAAATGGGTTCTTTTTCGCTTTGGCTAGCAACGAGTTGAATTCACTGGC
TTCAAACCCATTTTTGTTGGCGATTTCTTCGGCTTGCAAAGGGAATTTGA
GACACAAATTTTGAACCTTGCTGTTAAGCATGGGGAAGACGGAGGGGTCC
GTGGCGCCTGCTGGTAAGGCGTCTACATTGAATTCTTGTTTAAGCTGGGA
GGAGGGAGGGAGGGAGGGGGGGCAAGTGGGTGGGTGTGTGAGATTTACCA
GAGGATGAGGAAATCTCGGTCAAAGAATGGCGAGGAGAAATGAAGACTGA
CGCAAAACAGCAAATGAATGCTTACCATGTGATTATGCTCCGCGCGCAAG
GCTTCGATTTCCCTTAAGCTTTTAGCGAAGAGGGCCACCCGCTGGGGC
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Coding sequence (CDS) from alignment at scaffold_24:338855..339602-

>mRNA_8460 ID=mRNA_8460|Name=jgi.p|Nanoce1779_2|197175|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_24:338855..339602- (Nannochloropsis oceanica)
ATGACACACGTCTCTCTTTTCCTCGCTGGGTGTCCTCTACCCATTACCTT
CGCTCACTTCCATAACCAAAATGATCCCCTCTCGAATCCTTTTCTCCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCTTCCTACTTCCCCTGCTCCTTCATC
ATTCTTTCCACGCGCCATCGGAAAAATGGGTTCTTTTTCGCTTTGGCTAG
CAACGAGTTGAATTCACTGGCTTCAAACCCATTTTTGTTGGCGATTTCTT
CGGCTTGCAAAGGGAATTTGAGACACAAATTTTGA
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Synonyms
Publications