jgi.p|Nanoce1779_2|550078, mRNA_846 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|550078
Unique Name	mRNA_846
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2228
Alignment location	scaffold_2:571896..574180 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	550164
Track	FilteredModels2
ProteinId	550078

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:571896..574180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550078	gene_846	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550078	mRNA_846-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_846	CDS_846	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:571896..574180+
coding sequence from alignment at scaffold_2:571896..574180+

mRNA sequence

>mRNA_846 ID=mRNA_846|Name=jgi.p|Nanoce1779_2|550078|organism=Nannochloropsis oceanica|type=mRNA|length=2228bp
TGTGTTTTACGATCAGATCGCCAGACAATGCATAGCCCCATCCAATTTTC
GGACTCCACTTCTACATTAACTTAACAAGCAAACGTAAAATTCCCTCTCA
TTCACTAGCCTATATGCGCACGCAACTGTAAATTGGCCAATAACAGGCGG
CCACACAGCCTCCAACCTCCCACCCCCTCCACGACCCCTCCCTGCTCCTA
CCCGCTATCGCCGCCAACTCCTGTCTGCTGCAGCATAGCACGATCAGCAG
CAACATCGTTACCACTTCCACCACCCCCAATACCCCATGATGCATCGACC
GCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCAGATGCGGCGGATAC
CACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGGCGCGCGAGCATCGA
CGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGGAGAGAATTGACATA
CAATCTGCGGGCCTTAATCAGCAATGCAATAGACAAAGAGGAGCCTGGGG
CCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAGCCTTGGAGGAAACG
TGCGACGGCGCACCTATGGCAATGGACGAAGGGGGAGCGCAAGGGTCAAC
CCAATATTTTGATGAAAAAGGAGCGCATCCAAACAAACGGGTGCGGGGTA
AGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCCCAGAATGGATGGTA
GATATTCCCCGAGATTTAAACGGACACCTCTCGACTGAAGAAGGAGGAGG
TTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATGCCTGATGGTGGCTT
CGGGCGGAATCACCGTGACACGGCTGATGAATGGGGAGGTGCTCCATCGA
TTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCCAAGGGTCCCAAAGA
TGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGCGAGCCGGACGTACT
TTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAACTTTATGACTGTACG
TGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTTGAGGAGGAACTGGG
AAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAG
CAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTTTGGAGCCTTTGCCC
TACTTCGAATGTGATTCTAACGGCCTACGACGCGCGTATGGTGATTACGC
TCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAAGCAGAGCTACGTTG
AGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGGATATGAAATGCTCG
CGGTACTTTCTTCGGGAAACACAACAACAGCAGCAGCAGCAGCACCACCA
CCACCCACCATTAAGCTGTGTATTATTGGTGCAGAAGGCAAAGGGTGAGG
ATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGGACGACGTGGTCTTG
GGCCGGACGACGCTGGAGGAGGAAGAAGAACAAATGTTGATCCGATTTTG
GTATGAAGGAGCAACGGAGGACGAGAAAAATAACCAGCAGCAGTTGCATG
GGCTTCAGTTTGACAGGAAGTGCTCGTCGAAGAGGGCGGTGGCTGATGCC
TGGAGTAAGCTCCTGTTCCACGCTCGGGCCAAGAAGGGGATAAGGGAGGG
AGGGACGGCGGTGACGTTTGATACGTTGTTGCAGGCGGTTGAGAGGCCTG
TACAAAAGGAGGTGAGGGAGGAATCGAATGACGTCGAAGGGATGATGTGC
TGATTAACACGGAAACAGAGAGGGTGGATGCCAGTGTGTCTTAAGACTGT
AACATAGTATGTCTACTCGTCACGGTGGGATTGGTAGTGGGACGGGAGTT
CAGAAATAGAACAGAGCTGCAAGACCGATAGGAGGAGACGTGTTGGGGAA
ACAATATGGCTTTTAGGATTACTCGGGCCGAATCTGGCCACGAGAGAAAA
TATTTCTTCACAACGGATGCATTGATTCTAGTCGATCCTTATTATGGTGA
AAATCGGCACGAGCACTACATGTGGGTGAATCTATAATAAAATCTCGATC
CGGTCATCTAACACATTTAAGTTTGACTCCTTTTTAAATGTAACAAATGA
ATGTATGCATTGTGTGCTCTAACAGGCTTTGCTTCTACTACATCGATAAA
CATATGAAAAAGCTCGGCAAAGAGAGAAATAAATGTGAAAGAAACACAAA
GTACAAAATGAAGAAGGAAATGTAAAAC

protein sequence of jgi.p|Nanoce1779_2|550078

>mRNA_846-protein ID=mRNA_846-protein|Name=jgi.p|Nanoce1779_2|550078|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MMHRPPYKHAAPSQQPQMRRIPPKQKAASAYTSAREHRRAAVLQRQRAAR
RELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGG
AQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLST
EEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRA
KGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKF
EEELGRSGAGGGAGGAGGAGGAGGGAEAAGGYLLEPLPYFECDSNGLRRA
YGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLRETQQQQQ
QQHHHHPPLSCVLLVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEEEEQM
LIRFWYEGATEDEKNNQQQLHGLQFDRKCSSKRAVADAWSKLLFHARAKK
GIREGGTAVTFDTLLQAVERPVQKEVREESNDVEGMMC*

mRNA from alignment at scaffold_2:571896..574180+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_846 ID=mRNA_846|Name=jgi.p|Nanoce1779_2|550078|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at scaffold_2:571896..574180+ (Nannochloropsis oceanica)
TGTGTTTTACGATCAGATCGCCAGACAATGCATAGCCCCATCCAATTTTC
GGACTCCACTTCTACATTAACTTAACAAGCAAACGTAAAATTCCCTCTCA
TTCACTAGCCTATATGCGCACGCAACTGTAAATTGGCCAATAACAGGCGG
CCACACAGCCTCCAACCTCCCACCCCCTCCACGACCCCTCCCTGCTCCTA
CCCGCTATCGCCGCCAACTCCTGTCTGCTGCAGCATAGCACGATCAGCAG
CAACATCGTTACCACTTCCACCACCCCCAATACCCCATGATGCATCGACC
GCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCAGATGCGGCGGATAC
CACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGGCGCGCGAGCATCGA
CGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGGAGAGAATTGACATA
CAATCTGCGGGCCTTAATCAGCAATGCAATAGACAAAGAGGAGCCTGGGG
CCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAGCCTTGGAGGAAACG
TGCGACGGCGCACCTATGGCAATGGACGAAGGGGGAGCGCAAGGGTCAAC
CCAATATTTTGATGAAAAAGGAGCGCATCCAAACAAACGGGTGCGGGGTA
AGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCCCAGAATGGATGGTA
GATATTCCCCGAGATTTAAACGGACACCTCTCGACTGAAGAAGGAGGAGG
TTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATGCCTGATGGTGGCTT
CGGGCGGAATCACCGTGACACGGCTGATGAATGGGGAGGTGCTCCATCGA
TTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCCAAGGGTCCCAAAGA
TGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGCGAGCCGGACGTACT
TTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAACTTTATGACTGTACG
TGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTTGAGGAGGAACTGGG
AAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAG
CAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTTTGGAGCCTTTGCCC
TACTTCGAATGTGATTCTAACGGCCTACGACGCGCGTATGGTGATTACGC
TCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAAGCAGAGCTACGTTG
AGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGGATATGAAATGCTCG
CGGTACTTTCTTCGGGAAACACAACAACAGCAGCAGCAGCAGCACCACCA
CCACCCACCATTAAGCTGTGTATTATTGGTGCAGAAGGCAAAGGGTGAGG
ATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGGACGACGTGGTCTTG
GGCCGGACGACGCTGGAGGAGGTGAATGCGTGGGGCCTCGGACAAGTGCA
AGACGGAAGGGCGGGCGGAGAGAGAGAGGAAGAAGAACAAATGTTGATCC
GATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAAATAACCAGCAGCAG
TTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCGAAGAGGGCGGTGGC
TGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGCCAAGAAGGGGATAA
GGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGTTGCAGGCGGTTGAG
AGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAATGACGTCGAAGGGAT
GATGTGCTGATTAACACGGAAACAGAGAGGGTGGATGCCAGTGTGTCTTA
AGACTGTAACATAGTATGTCTACTCGTCACGGTGGGATTGGTAGTGGGAC
GGGAGTTCAGAAATAGAACAGAGCTGCAAGACCGATAGGAGGAGACGTGT
TGGGGAAACAATATGGCTTTTAGGATTACTCGGGCCGAATCTGGCCACGA
GAGAAAATATTTCTTCACAACGGATGCATTGATTCTAGTCGATCCTTATT
ATGGTGAAAATCGGCACGAGCACTACATGTGGGTGAATCTATAATAAAAT
CTCGATCCGGTCATCTAACACATTTAAGTTTGACTCCTTTTTAAATGTAA
CAAATGAATGTATGCATTGTGTGCTCTAACAGGCTTTGCTTCTACTACAT
CGATAAACATATGAAAAAGCTCGGCAAAGAGAGAAATAAATGTGAAAGAA
ACACAAAGTACAAAATGAAGAAGGAAATGTAAAAC

Coding sequence (CDS) from alignment at scaffold_2:571896..574180+

>mRNA_846 ID=mRNA_846|Name=jgi.p|Nanoce1779_2|550078|organism=Nannochloropsis oceanica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_2:571896..574180+ (Nannochloropsis oceanica)
ATGATGCATCGACCGCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCA
GATGCGGCGGATACCACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGG
CGCGCGAGCATCGACGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGG
AGAGAATTGACATACAATCTGCGGGCCTTAATCAGCAATGCAATAGACAA
AGAGGAGCCTGGGGCCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAG
CCTTGGAGGAAACGTGCGACGGCGCACCTATGGCAATGGACGAAGGGGGA
GCGCAAGGGTCAACCCAATATTTTGATGAAAAAGGAGCGCATCCAAACAA
ACGGGTGCGGGGTAAGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCC
CAGAATGGATGGTAGATATTCCCCGAGATTTAAACGGACACCTCTCGACT
GAAGAAGGAGGAGGTTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATG
CCTGATGGTGGCTTCGGGCGGAATCACCGTGACACGGCTGATGAATGGGG
AGGTGCTCCATCGATTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCC
AAGGGTCCCAAAGATGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGC
GAGCCGGACGTACTTTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAAC
TTTATGACTGTACGTGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTT
GAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTT
TGGAGCCTTTGCCCTACTTCGAATGTGATTCTAACGGCCTACGACGCGCG
TATGGTGATTACGCTCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAA
GCAGAGCTACGTTGAGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGG
ATATGAAATGCTCGCGGTACTTTCTTCGGGAAACACAACAACAGCAGCAG
CAGCAGCACCACCACCACCCACCATTAAGCTGTGTATTATTGGTGCAGAA
GGCAAAGGGTGAGGATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGG
ACGACGTGGTCTTGGGCCGGACGACGCTGGAGGAGGAAGAAGAACAAATG
TTGATCCGATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAAATAACCA
GCAGCAGTTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCGAAGAGGG
CGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGCCAAGAAG
GGGATAAGGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGTTGCAGGC
GGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAATGACGTCG
AAGGGATGATGTGCTGAATGATGCATCGACCGCCATACAAGCATGCTGCC
CCATCCCAGCAGCCGCAGATGCGGCGGATACCACCCAAGCAGAAAGCAGC
CAGCGCTTATACCTCGGCGCGCGAGCATCGACGTGCAGCCGTCTTACAGC
GGCAGCGGGCGGCGCGGAGAGAATTGACATACAATCTGCGGGCCTTAATC
AGCAATGCAATAGACAAAGAGGAGCCTGGGGCCGAGACAGGGGAGGACGA
CTCGAGGCAAGACCAAGCCTTGGAGGAAACGTGCGACGGCGCACCTATGG
CAATGGACGAAGGGGGAGCGCAAGGGTCAACCCAATATTTTGATGAAAAA
GGAGCGCATCCAAACAAACGGGTGCGGGGTAAGCAGGCCCAATTTTATGC
CAGCCAGTTTTCCATCCCAGAATGGATGGTAGATATTCCCCGAGATTTAA
ACGGACACCTCTCGACTGAAGAAGGAGGAGGTTGGTTCGTCATGCCACGC
CCGGAGGGGAAACGATGCCTGATGGTGGCTTCGGGCGGAATCACCGTGAC
ACGGCTGATGAATGGGGAGGTGCTCCATCGATTTCCATCCGCCTTGCCCA
ACGGTTCACCACGCGCCAAGGGTCCCAAAGATGGGTGGACGTTGCTTGAT
TGCATTTATTCGGAGGCGAGCCGGACGTACTTTGTGCTGGATTTGCTGTG
CTGGCGGAAGATGGAACTTTATGACTGTACGTGTGAGTTTCGTTTTTTTA
TACTGCGATCCAAATTTGAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGA
GGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGC
AGCAGGAGGGTACCTTTTGGAGCCTTTGCCCTACTTCGAATGTGATTCTA
ACGGCCTACGACGCGCGTATGGTGATTACGCTCCCTTTGTTCGGGATGGG
TTGCTGTTTTGGAGTAAGCAGAGCTACGTTGAGATAGGCCCGAGTCCGCT
TGTATTGCTCTGGAAGGATATGAAATGCTCGCGGTACTTTCTTCGGGAAA
CACAACAACAGCAGCAGCAGCAGCACCACCACCACCCACCATTAAGCTGT
GTATTATTGGTGCAGAAGGCAAAGGGTGAGGATGGGGAGAAGAGTGGATA
CGTTCTGAGCACACTGGACGACGTGGTCTTGGGCCGGACGACGCTGGAGG
AGGAAGAAGAACAAATGTTGATCCGATTTTGGTATGAAGGAGCAACGGAG
GACGAGAAAAATAACCAGCAGCAGTTGCATGGGCTTCAGTTTGACAGGAA
GTGCTCGTCGAAGAGGGCGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCC
ACGCTCGGGCCAAGAAGGGGATAAGGGAGGGAGGGACGGCGGTGACGTTT
GATACGTTGTTGCAGGCGGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGA
GGAATCGAATGACGTCGAAGGGATGATGTGCTGA

Synonyms

Publications