jgi.p|Nanoce1779_2|197183, mRNA_8459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197183
Unique NamemRNA_8459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length915
Alignment locationscaffold_24:337223..338304 +

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Properties
Property NameValue
TranscriptId197269
TrackFilteredModels2
ProteinId197183
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:337223..338304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197183gene_8459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197183mRNA_8459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8459CDS_8459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8459 ID=mRNA_8459|Name=jgi.p|Nanoce1779_2|197183|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
CGGGTTTCTGTGTTGCTGGTGCCTTGGTAAGCCTTTGCTAGGCATAGATC
ACCGACACACGCTACACGCCACTACTAAGTCCAATAACAAGCTTAAATGT
GCCTCGTAGCGGTGGAGGAGGATGCTGGGGTGGCTGCTTTGTCTTCGCTC
CTCAAAAGGTTTCTTACATCGACTAGTGCTTCTTCGCCCGACGATGGCAG
CGATTTGCATTTCTTGGGCACACAGACATCACACGACACGAAGACTCATT
CCTTTACTTTCACAATCCATATCGAAATACAGGAGCGGCCACTTTGATTG
TTGTGGTGTTGCGGAGGTGCATCGCCTGCCAGCCCACCTGCCTGTCGGCC
TGTCCCCACACACACTTTAATTCTCGACCGCCATCCCATCACCAGAAGCG
ATAACAAGAGGCAGAGCAATGGTTAGACGGTCAGCCACCTCCTCCTCCCT
CCTCCTCTTTTTCCTTCTCCTTCCCATTTTCTCCGTCGTGATACGAGCAA
GTTCGAGCAAGGTCAAATTTGTTTCCTTGTTGGCAAACGATGTAATCCTG
GATAGGTACGCTGCAGCAGTAGCAGCCACAGAGCCCCTGAGGGAGGACCG
GGACAAAGTCTTGCGAGAGAACATAAACCCCATCCGACTATGGTGGGTCA
AGGCAACAAAAGGGAACTTGCTCGACACCAACCGCAGAGGTGCTCACGCC
GAAGCTGTAAAGAAGGCCTATACATATCACGTGGTGCAGTCGGGGAAGAT
AATCAAAAGCTTGGGCTTGACAGTGTCGGATTTCAACACCATCACCCGCC
GGCTTGCGCACGACCCCAAGCTCCGAGATAAGGTGAGCATGTCATATTTT
CCTGTATCCTGTTCCCCCCCTTGTTGATATCGCTGAACATTTCACCTCAC
AATACAACCCTTTCT
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protein sequence of jgi.p|Nanoce1779_2|197183

>mRNA_8459-protein ID=mRNA_8459-protein|Name=jgi.p|Nanoce1779_2|197183|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MVRRSATSSSLLLFFLLLPIFSVVIRASSSKVKFVSLLANDVILDRYAAA
VAATEPLREDRDKVLRENINPIRLWWVKATKGNLLDTNRRGAHAEAVKKA
YTYHVVQSGKIIKSLGLTVSDFNTITRRLAHDPKLRDKVSMSYFPVSCSP
PC*
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mRNA from alignment at scaffold_24:337223..338304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8459 ID=mRNA_8459|Name=jgi.p|Nanoce1779_2|197183|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at scaffold_24:337223..338304+ (Nannochloropsis oceanica)
CGGGTTTCTGTGTTGCTGGTGCCTTGGTAAGCCTTTGCTAGGCATAGATC
ACCGACACACGCTACACGCCACTACTAAGTCCAATAACAAGCTTAAATGT
GCCTCGTAGCGGTGGAGGAGGATGCTGGGGTGGCTGCTTTGTCTTCGCTC
CTCAAAAGGTTTCTTACATCGACTAGTGCTTCTTCGCCCGACGATGGCAG
CGATTTGCATTTCTTGGGCACACAGACATCACACGACACGAAGACTCATT
CCTTTACTTTCACAATCCATATCGAAATACAGGAGCGGCCACTTTGATTG
TTGTGGTGTTGCGGAGGTGCATCGCCTGCCAGCCCACCTGCCTGTCGGCC
TGTCCCCACACACACTTTAATTCTCGACCGCCATCCCATCACCAGAAGCG
ATAACAAGAGGCAGAGCAATGGTTAGACGGTCAGCCACCTCCTCCTCCCT
CCTCCTCTTTTTCCTTCTCCTTCCCATTTTCTCCGTCGTGATACGAGCAA
GTTCGAGCAAGGTCAAATTTGTTTCCTTGTTGGCAAACGATGTAATCCTG
GATAGGTACGCTGCAGCAGTAGCAGCCACAGAGCCCCTGAGGGAGGACCG
GGACAAAGTCTTGCGAGGTGAGTGAAGTGGAGGTAGGAATGGGGAGGATG
TAGGGAGTATACACGTAGGTGGATGTAATGAGTGGAACAAGCAGGCTGGC
GCACAAGCACATGGCGCAAAGGCACATGCTTGACAACTTTCCTCCCTCCC
TCCTTCCCCTTATTCCTTTCTTTAACACCGACAGAGAACATAAACCCCAT
CCGACTATGGTGGGTCAAGGCAACAAAAGGGAACTTGCTCGACACCAACC
GCAGAGGTGCTCACGCCGAAGCTGTAAAGAAGGCCTATACATATCACGTG
GTGCAGTCGGGGAAGATAATCAAAAGCTTGGGCTTGACAGTGTCGGATTT
CAACACCATCACCCGCCGGCTTGCGCACGACCCCAAGCTCCGAGATAAGG
TGAGCATGTCATATTTTCCTGTATCCTGTTCCCCCCCTTGTTGATATCGC
TGAACATTTCACCTCACAATACAACCCTTTCT
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Coding sequence (CDS) from alignment at scaffold_24:337223..338304+

>mRNA_8459 ID=mRNA_8459|Name=jgi.p|Nanoce1779_2|197183|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_24:337223..338304+ (Nannochloropsis oceanica)
ATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTTTTTCCTTCT
CCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCAAGGTCAAAT
TTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTACGCTGCAGCA
GTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGTCTTGCGAGA
GAACATAAACCCCATCCGACTATGGTGGGTCAAGGCAACAAAAGGGAACT
TGCTCGACACCAACCGCAGAGGTGCTCACGCCGAAGCTGTAAAGAAGGCC
TATACATATCACGTGGTGCAGTCGGGGAAGATAATCAAAAGCTTGGGCTT
GACAGTGTCGGATTTCAACACCATCACCCGCCGGCTTGCGCACGACCCCA
AGCTCCGAGATAAGGTGAGCATGTCATATTTTCCTGTATCCTGTTCCCCC
CCTTGTTGAATGGTTAGACGGTCAGCCACCTCCTCCTCCCTCCTCCTCTT
TTTCCTTCTCCTTCCCATTTTCTCCGTCGTGATACGAGCAAGTTCGAGCA
AGGTCAAATTTGTTTCCTTGTTGGCAAACGATGTAATCCTGGATAGGTAC
GCTGCAGCAGTAGCAGCCACAGAGCCCCTGAGGGAGGACCGGGACAAAGT
CTTGCGAGAGAACATAAACCCCATCCGACTATGGTGGGTCAAGGCAACAA
AAGGGAACTTGCTCGACACCAACCGCAGAGGTGCTCACGCCGAAGCTGTA
AAGAAGGCCTATACATATCACGTGGTGCAGTCGGGGAAGATAATCAAAAG
CTTGGGCTTGACAGTGTCGGATTTCAACACCATCACCCGCCGGCTTGCGC
ACGACCCCAAGCTCCGAGATAAGGTGAGCATGTCATATTTTCCTGTATCC
TGTTCCCCCCCTTGTTGA
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Synonyms
Publications