jgi.p|Nanoce1779_2|532449, mRNA_8457 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532449
Unique Name	mRNA_8457
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1332
Alignment location	scaffold_24:332937..334346 +

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Properties


Property Name	Value
TranscriptId	532535
Track	FilteredModels2
ProteinId	532449

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:332937..334346 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532449	gene_8457	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532449	mRNA_8457-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8457	CDS_8457	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:332937..334346+
coding sequence from alignment at scaffold_24:332937..334346+

mRNA sequence

>mRNA_8457 ID=mRNA_8457|Name=jgi.p|Nanoce1779_2|532449|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCTCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAACA
ACTCAACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCTGCTCTCCTG
CCTCTGCACGACAACCAGATATTTCGCACCCAAGGTGCAACCCTGCGTGT
CCTCTACACCCCCGGACATACCACTGACCATTGCTCCTTCCTCCTAGAGG
AGGACGATGACGAGGACGAGGACGAAGGAGGGACGGCCGAAGGGTCTCTA
AAGAAGGCTCTGCAGAAAAAGGAGGGAGGGAAGAACGGAGGGAAGGGAGC
CTTGTTCTCCGGGGATTGTGTGCTGGGGCACGGAACGACAGTGTTCGACG
ACTTGAAGACGTATATGGAGAGCTTGGGGAGGTTGAGGAGGGAGGGAGGG
TGCGTGGAAGTGATTTACCCAGGGCATGGTAAGGAGATTAAGGAAGGGGG
AATGGGCGTGATTGACGCTTACATCAGTCATCGAGTATTTAGGGAGAAGC
AGATTATAGGGGTGTTGGAGAAGAGGAAAGGAGTAACGGAGGGAGGAGGG
GGAGGGGGAGGGAGGGAAGGAGGGAGGGGGATGACGCCGTTGCAGATCGT
GAAGGAGGTGTATGAGTGCAGTTTGCCGGCGGCAGTGGTGAGTTGGGTGG
TAGGGGAGGAAGGAGGGAGGCAGAACGTGTAG

protein sequence of jgi.p|Nanoce1779_2|532449

>mRNA_8457-protein ID=mRNA_8457-protein|Name=jgi.p|Nanoce1779_2|532449|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MSLGSRNSDNDNSNSNSLFRELPVILLSFFITLVGRAYRYWSPSLHAHPI
YNRLRQRLTSSSSSSSSCFSSSSSSSASPCSCSSTAHQQTHHPSSSSKPG
QTKAKAMPPAYPHLPNIEKLSKRVIRILGLNPGAHTLQGTNTYLVGTGKA
RLLIDTGEGREEYIPLLRQALKEAGAETIQAILLTHHHYDHIGGLRHVRA
AFPPSSSSSSSSPSYASSSSAATTTTTTIPAYNNSTTTTTSSSSSSSALL
PLHDNQIFRTQGATLRVLYTPGHTTDHCSFLLEEDDDEDEDEGGTAEGSL
KKALQKKEGGKNGGKGALFSGDCVLGHGTTVFDDLKTYMESLGRLRREGG
CVEVIYPGHGKEIKEGGMGVIDAYISHRVFREKQIIGVLEKRKGVTEGGG
GGGGREGGRGMTPLQIVKEVYECSLPAAVVSWVVGEEGGRQNV*

mRNA from alignment at scaffold_24:332937..334346+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8457 ID=mRNA_8457|Name=jgi.p|Nanoce1779_2|532449|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_24:332937..334346+ (Nannochloropsis oceanica)
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCTCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAAGT
GGCTCTTATCGCACGAATCAAATGGCAGCAGCAGCTCCAGCAGCTCGACC
AGCTCCAGCAGTCCCTGCTGCGGAAGCAACTCAACCACCACCACCACCTC
CTCCTCCTCCTCCTCCTCTGCTCTCCTGCCTCTGCACGACAACCAGATAT
TTCGCACCCAAGGTGCAACCCTGCGTGTCCTCTACACCCCCGGACATACC
ACTGACCATTGCTCCTTCCTCCTAGAGGAGGACGATGACGAGGACGAGGA
CGAAGGAGGGACGGCCGAAGGGTCTCTAAAGAAGGCTCTGCAGAAAAAGG
AGGGAGGGAAGAACGGAGGGAAGGGAGCCTTGTTCTCCGGGGATTGTGTG
CTGGGGCACGGAACGACAGTGTTCGACGACTTGAAGACGTATATGGAGAG
CTTGGGGAGGTTGAGGAGGGAGGGAGGGTGCGTGGAAGTGATTTACCCAG
GGCATGGTAAGGAGATTAAGGAAGGGGGAATGGGCGTGATTGACGCTTAC
ATCAGTCATCGAGTATTTAGGGAGAAGCAGATTATAGGGGTGTTGGAGAA
GAGGAAAGGAGTAACGGAGGGAGGAGGGGGAGGGGGAGGGAGGGAAGGAG
GGAGGGGGATGACGCCGTTGCAGATCGTGAAGGAGGTGTATGAGTGCAGT
TTGCCGGCGGCAGTGGTGAGTTGGGTGGTAGGGGAGGAAGGAGGGAGGCA
GAACGTGTAG

Coding sequence (CDS) from alignment at scaffold_24:332937..334346+

>mRNA_8457 ID=mRNA_8457|Name=jgi.p|Nanoce1779_2|532449|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_24:332937..334346+ (Nannochloropsis oceanica)
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCTCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAACA
ACTCAACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCTGCTCTCCTG
CCTCTGCACGACAACCAGATATTTCGCACCCAAGGTGCAACCCTGCGTGT
CCTCTACACCCCCGGACATACCACTGACCATTGCTCCTTCCTCCTAGAGG
AGGACGATGACGAGGACGAGGACGAAGGAGGGACGGCCGAAGGGTCTCTA
AAGAAGGCTCTGCAGAAAAAGGAGGGAGGGAAGAACGGAGGGAAGGGAGC
CTTGTTCTCCGGGGATTGTGTGCTGGGGCACGGAACGACAGTGTTCGACG
ACTTGAAGACGTATATGGAGAGCTTGGGGAGGTTGAGGAGGGAGGGAGGG
TGCGTGGAAGTGATTTACCCAGGGCATGGTAAGGAGATTAAGGAAGGGGG
AATGGGCGTGATTGACGCTTACATCAGTCATCGAGTATTTAGGGAGAAGC
AGATTATAGGGGTGTTGGAGAAGAGGAAAGGAGTAACGGAGGGAGGAGGG
GGAGGGGGAGGGAGGGAAGGAGGGAGGGGGATGACGCCGTTGCAGATCGT
GAAGGAGGTGTATGAGTGCAGTTTGCCGGCGGCAGTGGTGAGTTGGGTGG
TAGGGGAGGAAGGAGGGAGGCAGAACGTGTAGATGTCTCTCGGCAGCCGC
AATAGCGACAACGATAATAGCAACAGCAATAGCCTCTTTCGGGAGCTACC
TGTAATTCTCCTCTCTTTCTTTATTACCCTCGTGGGCCGTGCATACCGTT
ATTGGTCCCCTTCCTTGCACGCCCACCCAATCTATAACCGGCTGCGACAA
CGTCTTACATCCTCCTCGTCCTCCTCCTCTTCTTGTTTCTCTTCTTCCTC
CTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTTCCACTGCACATCAGCAGA
CGCATCACCCATCTTCTTCATCAAAGCCAGGACAGACAAAAGCAAAAGCC
ATGCCACCAGCATATCCCCACCTCCCCAACATAGAAAAACTCAGCAAACG
CGTAATTCGTATACTGGGTCTCAACCCTGGTGCTCACACTCTGCAAGGCA
CGAACACATACCTCGTGGGGACCGGGAAAGCTCGTTTGCTCATCGATACC
GGCGAGGGTAGAGAAGAATATATTCCTCTGCTCAGACAAGCCTTAAAGGA
GGCAGGTGCCGAGACGATCCAAGCCATTCTCCTAACTCATCACCACTACG
ACCACATCGGTGGCCTGCGCCACGTCCGTGCCGCCTTCCCTCCCTCATCA
TCATCTTCCTCCTCCTCCCCCTCCTATGCTTCCTCTTCCTCCGCCGCCAC
CACCACCACCACCACCATCCCCGCCTATAACAACTCAACCACCACCACCA
CCTCCTCCTCCTCCTCCTCCTCTGCTCTCCTGCCTCTGCACGACAACCAG
ATATTTCGCACCCAAGGTGCAACCCTGCGTGTCCTCTACACCCCCGGACA
TACCACTGACCATTGCTCCTTCCTCCTAGAGGAGGACGATGACGAGGACG
AGGACGAAGGAGGGACGGCCGAAGGGTCTCTAAAGAAGGCTCTGCAGAAA
AAGGAGGGAGGGAAGAACGGAGGGAAGGGAGCCTTGTTCTCCGGGGATTG
TGTGCTGGGGCACGGAACGACAGTGTTCGACGACTTGAAGACGTATATGG
AGAGCTTGGGGAGGTTGAGGAGGGAGGGAGGGTGCGTGGAAGTGATTTAC
CCAGGGCATGGTAAGGAGATTAAGGAAGGGGGAATGGGCGTGATTGACGC
TTACATCAGTCATCGAGTATTTAGGGAGAAGCAGATTATAGGGGTGTTGG
AGAAGAGGAAAGGAGTAACGGAGGGAGGAGGGGGAGGGGGAGGGAGGGAA
GGAGGGAGGGGGATGACGCCGTTGCAGATCGTGAAGGAGGTGTATGAGTG
CAGTTTGCCGGCGGCAGTGGTGAGTTGGGTGGTAGGGGAGGAAGGAGGGA
GGCAGAACGTGTAG

Synonyms

Publications