jgi.p|Nanoce1779_2|602109, mRNA_8455 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602109
Unique Name	mRNA_8455
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1690
Alignment location	scaffold_24:327238..329405 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602195
Track	FilteredModels2
ProteinId	602109

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:327238..329405 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602109	gene_8455	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602109	mRNA_8455-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8455	CDS_8455	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:327238..329405-
coding sequence from alignment at scaffold_24:327238..329405-

mRNA sequence

>mRNA_8455 ID=mRNA_8455|Name=jgi.p|Nanoce1779_2|602109|organism=Nannochloropsis oceanica|type=mRNA|length=1690bp
ACAGGCCCGGTCGAAACGACAGCCTAAGATACTTCCTACCCAGACAAAGG
ATGCAGCAACGTCTGGTCACCCTTGTGGGATGCTTGTCGGTCATGCTGGG
CGGGAGCAATACTGTCCTCGGCTTCGTGTGGGGAGCCCGTGGCGCCTCAC
CACTAACACGCAGCCCGCCCTCCTCTACCTCCTCCCCTACCTCCCTTCAC
GCCCAAGCCCTCCTCCGACCCACAGAGAGCACAACTTCCTCCGACATGGG
CACGCGGCTGCTAGCTGACTTAAAGGTGGCAGCACAAGCAGGAGACTCGA
ACAAGGCGTTTGAAATCTTGAATTCTTTGGACGGGCAGTCCTTGCCTAAG
ACCATCGTGCACTTCAACCGCGTTCTGAAGGCCTGTGTGGAGGGGAAGGA
AATGGGGAAGATCGAGGGGGTGTTGGAGCAGATGAATGGCAGCGGGGCGA
TGATGGACGAGGTGACGGTGAAGCTACTGGTGAACGCTTACGTTTCGCAA
GGCAAGCTGGCTGAGGCGGTGGATGTCTTCGAACAGGCACGGGAGGAGGA
GGTGATTGGCGCTGTGGATCCGTCCCTGTACGACACCGTCATTGGTGCCT
ACAGGCAGCAGGGCGCCTTCGAGAAGGCCATGGACCTTTGCGATGAGATG
AGGTTCTTGCGGTTGAACCCGACCAAGGAGGGTTATGCGTTTATCGCCAC
AGTTGCTGTGAAGGATGGGAAGACCTACCTGATCAACCGCACCCTCGAAA
CGATGAAGCAGGAGGGGTTTGCCGTGAGTGAGATCGAGTACGTCAAGGGC
ATCATTGAGAAGGAGCTGCCGGAGAACCTGAAGCACCAGGTAAACGGTCA
GGTCGTCGCCAAGGCATGAAGGGAAGGCGGGAGAGAATGAGGGAAATAGG
GGGGGACAGGGAGGGAGGGCAGGTAGGGAGGAAGGGGGGGGAATAAAAAA
TAACTTTAAAAAGGAAACAAAAGGAGATACACACACATATGGATGACCAC
CAGGAGAAGCAAAGGGAGGGAGCGGGCACGTGGCTGGTGTTTGCGTGCCC
CCTCTGGTCGCAAGTTGGATCCCCGGGGGTTATGGGCGTGTGTGTGCGTG
AGGCGAGAGAGCTAAAAAGGAGAAGAAGATGTGTCCCATGAAAGAAAGAA
GAGAAAGAAAGATCAGAAATACATCTTAGAGTTGGATTGGCATGAAAGCG
TAAAAAACGTCTTTTTTTCGCCTCCAAGCCTGTCCCTGCTTTTTTTCCTG
GACAGGGTACGTGAGTGACGTAATAAGAGACGGTGGTGTGTCGGGAGTTA
AAACCAAAAAGGGTGACGGGAAGAGAGCTCCCTCTTGATCTCGCTGCCTC
TGCATATTGATAACGGATGTATCACGAAAGGATCATCATCTCCTCGAATG
CTCGCCTCTTGCTGCTTGCACGAGAAGGATTGTCCTGACAAAAGACAAGA
GGAGGGAGGGAGAAGATTGAGGAGGTGAGTCGCTTGTTGGATTTGTTGGA
TGTGGATCAGAATGTACTTGTCGAGGTTTTCCGGTTGTTGGGAAGCTCGA
TGGACGGGAAGGGGGGGAGAGGAGGAAGAGGAGACAAAGGAGGGGGTGGA
TAAAGAGGAGGAGGAGGTGGACGACGACGGCGGGAAGGACGGAGAGTAAG
AGCAGGACAGAGAGGGGAGCGTAGTCAGGAAGGGGAATAT

protein sequence of jgi.p|Nanoce1779_2|602109

>mRNA_8455-protein ID=mRNA_8455-protein|Name=jgi.p|Nanoce1779_2|602109|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MQQRLVTLVGCLSVMLGGSNTVLGFVWGARGASPLTRSPPSSTSSPTSLH
AQALLRPTESTTSSDMGTRLLADLKVAAQAGDSNKAFEILNSLDGQSLPK
TIVHFNRVLKACVEGKEMGKIEGVLEQMNGSGAMMDEVTVKLLVNAYVSQ
GKLAEAVDVFEQAREEEVIGAVDPSLYDTVIGAYRQQGAFEKAMDLCDEM
RFLRLNPTKEGYAFIATVAVKDGKTYLINRTLETMKQEGFAVSEIEYVKG
IIEKELPENLKHQVNGQVVAKA*

mRNA from alignment at scaffold_24:327238..329405-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8455 ID=mRNA_8455|Name=jgi.p|Nanoce1779_2|602109|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_24:327238..329405- (Nannochloropsis oceanica)
ACAGGCCCGGTCGAAACGACAGCCTAAGATACTTCCTACCCAGACAAAGG
ATGCAGCAACGTCTGGTCACCCTTGTGGGATGCTTGTCGGTCATGCTGGG
CGGGAGCAATGTACGTGACAGAGGACGAAGTAGTTGGAGGGCAGGCGAGG
GGAGAGATAGAAAGGGAAGATGGAGTGGGGAAAAAGAGGTCGGCCGATCC
GATTTCCTGGTTTCTGTCATCATCAGGCTCACGGCGACGCCTGCTTGACA
GAGGGAAAGGAAGGGTTGGTGGAGGGGTGGAGGGACCAGCTTTTTCGCAC
GCACACTGGTGGTGGACTGAATCATGGCATTGGCGTGTGGTAATTGGGCC
GAAAGCAGATGACACTGAGAAAAGCAAACGTCATCGCACCCACCTCAGGA
GTGACACATACTCACACCTCCTCCCTTCCTTCCCTCCTTCTCCCCCTTCC
TTTCTCCCACCACAAATGAAAACAGACTGTCCTCGGCTTCGTGTGGGGAG
CCCGTGGCGCCTCACCACTAACACGCAGCCCGCCCTCCTCTACCTCCTCC
CCTACCTCCCTTCACGCCCAAGCCCTCCTCCGACCCACAGAGAGCACAAC
TTCCTCCGACATGGGCACGCGGCTGCTAGCTGACTTAAAGGTGGCAGCAC
AAGCAGGAGACTCGAACAAGGCGTTTGAAATCTTGAATTCTTTGGACGGG
CAGTCCTTGCCTAAGACCATCGTGCACTTCAACCGCGTTCTGAAGGCCTG
TGTGGAGGGGAAGGAAATGGGGAAGATCGAGGGGGTGTTGGAGCAGATGA
ATGGCAGCGGGGCGATGATGGACGAGGTGACGGTGAAGCTACTGGTGAAC
GCTTACGTTTCGCAAGGCAAGCTGGCTGAGGCGGTGGATGTCTTCGAACA
GGCACGGGAGGAGGAGGTGATTGGCGCTGTGGATCCGTCCCTGTACGACA
CCGTCATTGGTGCCTACAGGCAGCAGGGCGCCTTCGAGAAGGCCATGGAC
CTTTGCGATGAGATGAGGTGGGTTAGACTCCCTCCCTCCCTCTCACCCAC
CTCCGCTTTCTTCTCCACGTCCCTCCACAACATCTCACACCCCTTCCTCC
CTCTCATCCTCCCTCCCTCTCCATCCTCAGGTTCTTGCGGTTGAACCCGA
CCAAGGAGGGTTATGCGTTTATCGCCACAGTTGCTGTGAAGGATGGGAAG
ACCTACCTGATCAACCGCACCCTCGAAACGATGAAGCAGGAGGGGTTTGC
CGTGAGTGAGATCGAGTACGTCAAGGGCATCATTGAGAAGGAGCTGCCGG
AGAACCTGAAGCACCAGGTAAACGGTCAGGTCGTCGCCAAGGCATGAAGG
GAAGGCGGGAGAGAATGAGGGAAATAGGGGGGGACAGGGAGGGAGGGCAG
GTAGGGAGGAAGGGGGGGGAATAAAAAATAACTTTAAAAAGGAAACAAAA
GGAGATACACACACATATGGATGACCACCAGGAGAAGCAAAGGGAGGGAG
CGGGCACGTGGCTGGTGTTTGCGTGCCCCCTCTGGTCGCAAGTTGGATCC
CCGGGGGTTATGGGCGTGTGTGTGCGTGAGGCGAGAGAGCTAAAAAGGAG
AAGAAGATGTGTCCCATGAAAGAAAGAAGAGAAAGAAAGATCAGAAATAC
ATCTTAGAGTTGGATTGGCATGAAAGCGTAAAAAACGTCTTTTTTTCGCC
TCCAAGCCTGTCCCTGCTTTTTTTCCTGGACAGGGTACGTGAGTGACGTA
ATAAGAGACGGTGGTGTGTCGGGAGTTAAAACCAAAAAGGGTGACGGGAA
GAGAGCTCCCTCTTGATCTCGCTGCCTCTGCATATTGATAACGGATGTAT
CACGAAAGGATCATCATCTCCTCGAATGCTCGCCTCTTGCTGCTTGCACG
AGAAGGATTGTCCTGACAAAAGACAAGAGGAGGGAGGGAGAAGATTGAGG
AGGTGAGTCGCTTGTTGGATTTGTTGGATGTGGATCAGAATGTACTTGTC
GAGGTTTTCCGGTTGTTGGGAAGCTCGATGGACGGGAAGGGGGGGAGAGG
AGGAAGAGGAGACAAAGGAGGGGGTGGATAAAGAGGAGGAGGAGGTGGAC
GACGACGGCGGGAAGGACGGAGAGTAAGAGCAGGACAGAGAGGGGAGCGT
AGTCAGGAAGGGGAATAT

Coding sequence (CDS) from alignment at scaffold_24:327238..329405-

>mRNA_8455 ID=mRNA_8455|Name=jgi.p|Nanoce1779_2|602109|organism=Nannochloropsis oceanica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_24:327238..329405- (Nannochloropsis oceanica)
GTTCTTGCGGTTGAACCCGACCAAGGAGGGTTATGCGTTTATCGCCACAG
TTGCTGTGAAGGATGGGAAGACCTACCTGATCAACCGCACCCTCGAAACG
ATGAAGCAGGAGGGGTTTGCCGTGAGTGAGATCGAGTACGTCAAGGGCAT
CATTGAGAAGGAGCTGCCGGAGAACCTGAAGCACCAGGTAAACGGTCAGG
TCGTCGCCAAGGCATGAACTGTCCTCGGCTTCGTGTGGGGAGCCCGTGGC
GCCTCACCACTAACACGCAGCCCGCCCTCCTCTACCTCCTCCCCTACCTC
CCTTCACGCCCAAGCCCTCCTCCGACCCACAGAGAGCACAACTTCCTCCG
ACATGGGCACGCGGCTGCTAGCTGACTTAAAGGTGGCAGCACAAGCAGGA
GACTCGAACAAGGCGTTTGAAATCTTGAATTCTTTGGACGGGCAGTCCTT
GCCTAAGACCATCGTGCACTTCAACCGCGTTCTGAAGGCCTGTGTGGAGG
GGAAGGAAATGGGGAAGATCGAGGGGGTGTTGGAGCAGATGAATGGCAGC
GGGGCGATGATGGACGAGGTGACGGTGAAGCTACTGGTGAACGCTTACGT
TTCGCAAGGCAAGCTGGCTGAGGCGGTGGATGTCTTCGAACAGGCACGGG
AGGAGGAGGTGATTGGCGCTGTGGATCCGTCCCTGTACGACACCGTCATT
GGTGCCTACAGGCAGCAGGGCGCCTTCGAGAAGGCCATGGACCTTTGCGA
TGAGATGAGATGCAGCAACGTCTGGTCACCCTTGTGGGATGCTTGTCGGT
CATGCTGGGCGGGAGCAATGTTCTTGCGGTTGAACCCGACCAAGGAGGGT
TATGCGTTTATCGCCACAGTTGCTGTGAAGGATGGGAAGACCTACCTGAT
CAACCGCACCCTCGAAACGATGAAGCAGGAGGGGTTTGCCGTGAGTGAGA
TCGAGTACGTCAAGGGCATCATTGAGAAGGAGCTGCCGGAGAACCTGAAG
CACCAGGTAAACGGTCAGGTCGTCGCCAAGGCATGAACTGTCCTCGGCTT
CGTGTGGGGAGCCCGTGGCGCCTCACCACTAACACGCAGCCCGCCCTCCT
CTACCTCCTCCCCTACCTCCCTTCACGCCCAAGCCCTCCTCCGACCCACA
GAGAGCACAACTTCCTCCGACATGGGCACGCGGCTGCTAGCTGACTTAAA
GGTGGCAGCACAAGCAGGAGACTCGAACAAGGCGTTTGAAATCTTGAATT
CTTTGGACGGGCAGTCCTTGCCTAAGACCATCGTGCACTTCAACCGCGTT
CTGAAGGCCTGTGTGGAGGGGAAGGAAATGGGGAAGATCGAGGGGGTGTT
GGAGCAGATGAATGGCAGCGGGGCGATGATGGACGAGGTGACGGTGAAGC
TACTGGTGAACGCTTACGTTTCGCAAGGCAAGCTGGCTGAGGCGGTGGAT
GTCTTCGAACAGGCACGGGAGGAGGAGGTGATTGGCGCTGTGGATCCGTC
CCTGTACGACACCGTCATTGGTGCCTACAGGCAGCAGGGCGCCTTCGAGA
AGGCCATGGACCTTTGCGATGAGATGAGATGCAGCAACGTCTGGTCACCC
TTGTGGGATGCTTGTCGGTCATGCTGGGCGGGAGCAATGTTCTTGCGGTT
GAACCCGACCAAGGAGGGTTATGCGTTTATCGCCACAGTTGCTGTGAAGG
ATGGGAAGACCTACCTGATCAACCGCACCCTCGAAACGATGAAGCAGGAG
GGGTTTGCCGTGAGTGAGATCGAGTACGTCAAGGGCATCATTGAGAAGGA
GCTGCCGGAGAACCTGAAGCACCAGGTAAACGGTCAGGTCGTCGCCAAGG
CATGAACTGTCCTCGGCTTCGTGTGGGGAGCCCGTGGCGCCTCACCACTA
ACACGCAGCCCGCCCTCCTCTACCTCCTCCCCTACCTCCCTTCACGCCCA
AGCCCTCCTCCGACCCACAGAGAGCACAACTTCCTCCGACATGGGCACGC
GGCTGCTAGCTGACTTAAAGGTGGCAGCACAAGCAGGAGACTCGAACAAG
GCGTTTGAAATCTTGAATTCTTTGGACGGGCAGTCCTTGCCTAAGACCAT
CGTGCACTTCAACCGCGTTCTGAAGGCCTGTGTGGAGGGGAAGGAAATGG
GGAAGATCGAGGGGGTGTTGGAGCAGATGAATGGCAGCGGGGCGATGATG
GACGAGGTGACGGTGAAGCTACTGGTGAACGCTTACGTTTCGCAAGGCAA
GCTGGCTGAGGCGGTGGATGTCTTCGAACAGGCACGGGAGGAGGAGGTGA
TTGGCGCTGTGGATCCGTCCCTGTACGACACCGTCATTGGTGCCTACAGG
CAGCAGGGCGCCTTCGAGAAGGCCATGGACCTTTGCGATGAGATGAGATG
CAGCAACGTCTGGTCACCCTTGTGGGATGCTTGTCGGTCATGCTGGGCGG
GAGCAAT

Synonyms

Publications