jgi.p|Nanoce1779_2|197000, mRNA_8454 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197000
Unique NamemRNA_8454
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_24:326207..326806 -

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Properties
Property NameValue
TranscriptId197086
TrackFilteredModels2
ProteinId197000
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:326207..326806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197000gene_8454Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197000mRNA_8454-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8454CDS_8454Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8454 ID=mRNA_8454|Name=jgi.p|Nanoce1779_2|197000|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
GTGGCGTACAACCAAGCCAAAGAACCTCCAGCCCATGATCAAGTACGAGG
GTAGCATTTGTGTACGGTGACAGAAACAGGTGACCCCAAGCCAGCCTCAA
AGTGAACGACAGCCTCATGGGGACACGAGTGACAAAAGGAGCCGAGGCAA
GCGAATGTACAGCCAGCTTCCTTGCGTGGCATTTAGCTCGCTGATTCTTT
CACTGACACCACCAGCCACTCCCCCCGACTCCAACCCACAAGGACACAGA
TGTCCTCAAGCCAGCCTCAGAGCGAACGACAGCACCGTGGGTCTTCATCG
TACTCCTCTCGGCATCCCTCCCCCTCCTCCCCCTCCTCTCTCCTGCTTCC
TCCACTCATCCTTTCTCCCTTCCTCTCCTATCAGCACCGTAGCGACGGCC
TCCTTTTGCCCTTGTGCATTTGACCACATCGCATCAATACGAATATTCAT
TGTACCTGCGAGAGCACCTTGCCTGTCCATTTTGCCACTGTCCACCATCA
GGCAGTAGCGATGACACTACCAGTTGTATGCCCTTCCGACACAATTCTTA
TTTCAGCATTTAGGGAGGAGGGAAGGATAAAAGAGGAAGGAGGAAGATGG
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protein sequence of jgi.p|Nanoce1779_2|197000

>mRNA_8454-protein ID=mRNA_8454-protein|Name=jgi.p|Nanoce1779_2|197000|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MYSQLPCVAFSSLILSLTPPATPPDSNPQGHRCPQASLRANDSTVGLHRT
PLGIPPPPPPPLSCFLHSSFLPSSPISTVATASFCPCAFDHIASIRIFIV
PARAPCLSILPLSTIRQ*
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mRNA from alignment at scaffold_24:326207..326806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8454 ID=mRNA_8454|Name=jgi.p|Nanoce1779_2|197000|organism=Nannochloropsis oceanica|type=mRNA|length=600bp|location=Sequence derived from alignment at scaffold_24:326207..326806- (Nannochloropsis oceanica)
GTGGCGTACAACCAAGCCAAAGAACCTCCAGCCCATGATCAAGTACGAGG
GTAGCATTTGTGTACGGTGACAGAAACAGGTGACCCCAAGCCAGCCTCAA
AGTGAACGACAGCCTCATGGGGACACGAGTGACAAAAGGAGCCGAGGCAA
GCGAATGTACAGCCAGCTTCCTTGCGTGGCATTTAGCTCGCTGATTCTTT
CACTGACACCACCAGCCACTCCCCCCGACTCCAACCCACAAGGACACAGA
TGTCCTCAAGCCAGCCTCAGAGCGAACGACAGCACCGTGGGTCTTCATCG
TACTCCTCTCGGCATCCCTCCCCCTCCTCCCCCTCCTCTCTCCTGCTTCC
TCCACTCATCCTTTCTCCCTTCCTCTCCTATCAGCACCGTAGCGACGGCC
TCCTTTTGCCCTTGTGCATTTGACCACATCGCATCAATACGAATATTCAT
TGTACCTGCGAGAGCACCTTGCCTGTCCATTTTGCCACTGTCCACCATCA
GGCAGTAGCGATGACACTACCAGTTGTATGCCCTTCCGACACAATTCTTA
TTTCAGCATTTAGGGAGGAGGGAAGGATAAAAGAGGAAGGAGGAAGATGG
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Coding sequence (CDS) from alignment at scaffold_24:326207..326806-

>mRNA_8454 ID=mRNA_8454|Name=jgi.p|Nanoce1779_2|197000|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_24:326207..326806- (Nannochloropsis oceanica)
ATGTACAGCCAGCTTCCTTGCGTGGCATTTAGCTCGCTGATTCTTTCACT
GACACCACCAGCCACTCCCCCCGACTCCAACCCACAAGGACACAGATGTC
CTCAAGCCAGCCTCAGAGCGAACGACAGCACCGTGGGTCTTCATCGTACT
CCTCTCGGCATCCCTCCCCCTCCTCCCCCTCCTCTCTCCTGCTTCCTCCA
CTCATCCTTTCTCCCTTCCTCTCCTATCAGCACCGTAGCGACGGCCTCCT
TTTGCCCTTGTGCATTTGACCACATCGCATCAATACGAATATTCATTGTA
CCTGCGAGAGCACCTTGCCTGTCCATTTTGCCACTGTCCACCATCAGGCA
GTAG
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Synonyms
Publications