jgi.p|Nanoce1779_2|197001, mRNA_8453 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197001
Unique NamemRNA_8453
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length845
Alignment locationscaffold_24:325362..326206 -

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Properties
Property NameValue
TranscriptId197087
TrackFilteredModels2
ProteinId197001
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:325362..326206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197001gene_8453Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197001mRNA_8453-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8453CDS_8453Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8453 ID=mRNA_8453|Name=jgi.p|Nanoce1779_2|197001|organism=Nannochloropsis oceanica|type=mRNA|length=845bp
GAGGGGAAAGGGGGGAGGAGGGATGCGACCTTCAGTATTGACAGTCTCTG
ACGGCGCCGTGCCTTAAATCACCAGATAGACACGACACCTCAATGACGGT
CCATTTCATCGTGACGAAGAAGGGGAAGGACCGGCAACAGAAACGCTTCG
TCAGAAGCAGAAAAAGCCGCAGCCGGACGGAGGCCCACGCATTATCGCGA
TCGATTCAGGTCATGTCACTGGATCAACGCATTGATCCGCCCATTCTCAG
AGTAATCTCTTCGCGTCGACGTTATGATTCGGTTCGTCTGCGAGTCCAGT
GCCGTAACAAGTTTGACACGACCTGGATCGATCGCGACAATTCGTGGGCC
TTCGTCCGGCTGCGGCTTTTTCGGGCCATGGCAGAGTTTACATTTTTGGA
GAAAGTATCCCAACAGGCGGTTTCCCTATTGATGCTTTCAATCCCCCCCT
CCTCTAGATACTTTCCACGCGTCAAAGTTGTTACCTTTCTTGGTCTGAGA
GTTAACTGCCGCCTTATGCTGACGCCCATCATTGCATATGGTGCGGCTTC
ATTTCATCACACTGGTCGAGGAGAGAGCAACGTTCCGGTCAAGAGGGTAT
ACGGAGCATGTCACAAGCACTACAAGATAATGCTTGTTAACGAGCATCTC
ACGACCAAGGTCCATCACGTCTGTGGTCAACGCCTCAACCCGATCGCGAG
TAGGGCGGCAGGAGGGGCGCAAGAAGAAGGGGCAGCCATACGGCACACAA
CATCCTGTGGAGAGTAGAGTCCGAGGAGAAGATCATCCACTTAAGCTCCG
GTTTCGCTCGGCAACCGCGGCAGGAGGTGCAGACGCTTCTGAAGT
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protein sequence of jgi.p|Nanoce1779_2|197001

>mRNA_8453-protein ID=mRNA_8453-protein|Name=jgi.p|Nanoce1779_2|197001|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MTVHFIVTKKGKDRQQKRFVRSRKSRSRTEAHALSRSIQVMSLDQRIDPP
ILRVISSRRRYDSVRLRVQCRNKFDTTWIDRDNSWAFVRLRLFRAMAEFT
FLEKVSQQAVSLLMLSIPPSSRYFPRVKVVTFLGLRVNCRLMLTPIIAYG
AASFHHTGRGESNVPVKRVYGACHKHYKIMLVNEHLTTKVHHVCGQRLNP
IASRAAGGAQEEGAAIRHTTSCGE*
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mRNA from alignment at scaffold_24:325362..326206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8453 ID=mRNA_8453|Name=jgi.p|Nanoce1779_2|197001|organism=Nannochloropsis oceanica|type=mRNA|length=845bp|location=Sequence derived from alignment at scaffold_24:325362..326206- (Nannochloropsis oceanica)
GAGGGGAAAGGGGGGAGGAGGGATGCGACCTTCAGTATTGACAGTCTCTG
ACGGCGCCGTGCCTTAAATCACCAGATAGACACGACACCTCAATGACGGT
CCATTTCATCGTGACGAAGAAGGGGAAGGACCGGCAACAGAAACGCTTCG
TCAGAAGCAGAAAAAGCCGCAGCCGGACGGAGGCCCACGCATTATCGCGA
TCGATTCAGGTCATGTCACTGGATCAACGCATTGATCCGCCCATTCTCAG
AGTAATCTCTTCGCGTCGACGTTATGATTCGGTTCGTCTGCGAGTCCAGT
GCCGTAACAAGTTTGACACGACCTGGATCGATCGCGACAATTCGTGGGCC
TTCGTCCGGCTGCGGCTTTTTCGGGCCATGGCAGAGTTTACATTTTTGGA
GAAAGTATCCCAACAGGCGGTTTCCCTATTGATGCTTTCAATCCCCCCCT
CCTCTAGATACTTTCCACGCGTCAAAGTTGTTACCTTTCTTGGTCTGAGA
GTTAACTGCCGCCTTATGCTGACGCCCATCATTGCATATGGTGCGGCTTC
ATTTCATCACACTGGTCGAGGAGAGAGCAACGTTCCGGTCAAGAGGGTAT
ACGGAGCATGTCACAAGCACTACAAGATAATGCTTGTTAACGAGCATCTC
ACGACCAAGGTCCATCACGTCTGTGGTCAACGCCTCAACCCGATCGCGAG
TAGGGCGGCAGGAGGGGCGCAAGAAGAAGGGGCAGCCATACGGCACACAA
CATCCTGTGGAGAGTAGAGTCCGAGGAGAAGATCATCCACTTAAGCTCCG
GTTTCGCTCGGCAACCGCGGCAGGAGGTGCAGACGCTTCTGAAGT
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Coding sequence (CDS) from alignment at scaffold_24:325362..326206-

>mRNA_8453 ID=mRNA_8453|Name=jgi.p|Nanoce1779_2|197001|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_24:325362..326206- (Nannochloropsis oceanica)
ATGACGGTCCATTTCATCGTGACGAAGAAGGGGAAGGACCGGCAACAGAA
ACGCTTCGTCAGAAGCAGAAAAAGCCGCAGCCGGACGGAGGCCCACGCAT
TATCGCGATCGATTCAGGTCATGTCACTGGATCAACGCATTGATCCGCCC
ATTCTCAGAGTAATCTCTTCGCGTCGACGTTATGATTCGGTTCGTCTGCG
AGTCCAGTGCCGTAACAAGTTTGACACGACCTGGATCGATCGCGACAATT
CGTGGGCCTTCGTCCGGCTGCGGCTTTTTCGGGCCATGGCAGAGTTTACA
TTTTTGGAGAAAGTATCCCAACAGGCGGTTTCCCTATTGATGCTTTCAAT
CCCCCCCTCCTCTAGATACTTTCCACGCGTCAAAGTTGTTACCTTTCTTG
GTCTGAGAGTTAACTGCCGCCTTATGCTGACGCCCATCATTGCATATGGT
GCGGCTTCATTTCATCACACTGGTCGAGGAGAGAGCAACGTTCCGGTCAA
GAGGGTATACGGAGCATGTCACAAGCACTACAAGATAATGCTTGTTAACG
AGCATCTCACGACCAAGGTCCATCACGTCTGTGGTCAACGCCTCAACCCG
ATCGCGAGTAGGGCGGCAGGAGGGGCGCAAGAAGAAGGGGCAGCCATACG
GCACACAACATCCTGTGGAGAGTAG
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Synonyms
Publications