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Properties
| Property Name | Value |
|---|
| TranscriptId | 197079 |
| Track | FilteredModels2 |
| ProteinId | 196993 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:321981..324766 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8452 ID=mRNA_8452|Name=jgi.p|Nanoce1779_2|196993|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp
AGGCGCACACAACTGGATAATCCCAAAACCCTCTAATACTTTTCACATGC
ACACTCACACACCGCACAAAGACGCAAGGCGACACCCTTTCCTTGAAATT
GCAGCTGCCATTGACTGGACATCTGCCGCAGGTGGAAGCGCCTGTGGGGT
CAGGAGTGGGGCAGCAGCGCAAGGAGCATCAGGCCGCCAACACAAAATGC
TTGTGGAATGGCACCCTTTCTTGCCCGATTACTTTGTCGCCGGTGGGGAG
GAGCTCCAGCTATACCAAGTGAACCGACAGCAGCAGGATCAGCAGGACTT
TGCAAGTAGCGGGCTGCCTCAGCCACGTTCCTTCCGCCTCCTCAAATCCG
TGCCCATCCCGCAGCTGACCTGCTTCCAATGCCGTCCCCTTGAACATCCC
TCCTTCCTTGCCGCCGTCGGTACCCAACACGGTCGAGTCCACCTGGTCAA
TTTCAAGCAGCAACGGCAAGAGCAGGAGCAGGAGCAGCAGGAGCAGCAGC
GGCCGGAGGGTGAGTGCGAAAGCAAAAGGGGGCGGTCCTCTATTGACAAA
GATTACAACCAGCAGCAGCCCAAAGATAAGGAGGATGAGACCTCGTCCAC
CTCTTCTTCCTTTTCCTTTTCCTCCTCCTCTTCCTCCTCCTTTTCCTCCT
CCTCCTCCTCGTTCACTCGCTCCCTCCTCTCCTCTCCCGCTGGCATTGTG
CAAACATTTGCTCCAAAGGCTGTTCGTCTCTGTACCAGCGTTGCATGGAA
TCCCCGGTCTCCCTCTCAACTAGCCGTTGGCCTGGAAAAACTCCGAAGCG
ACCCTTCCCTCCTTATCTACGACACCCTCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAATGCAGGCCCCTCCATGGTTTCCTCTGCTGGCA
TCGGTGCTTCTGCTGCGGCCACGACCTTCACCTCTGTCCCTTCCTCCTTC
TCTCCCTCCTCCTCATCCCGGCCCCTCGCATCCCTTGCCTTGTCCGAAGG
TGTCACGGCACTCGCCTTCAAGCACGACCTCCCTCATGTCCTTCTCTATG
GCACCTCCTCCCGCTGGCTCCGAATGCACGATCTACGGGGATCAACGCCT
TCCAACGCTCTCTCCATCTGTGCCCATTCTCGAAAGGTGAAAGGCCTGGC
CCTCCATCCCTCCCTCCCTCACGTCCTCGCCTCCTTCTCCGATGCCCCCG
GCGAGCCCGTCAAGGGTTGGTGATGAGGAAGAGAGCGCAAGCAGGGTACG
GTATGGACGTCGGAAAAAATATTCAAATTATGGCGAACGAGGCAGAGGAA
GCAGAGGAAGGGAGAGAGGGAGCGAGGGAGGGAGGGAGGGCGGCAAGGAA
GCTGATGCACGTGTGGATGTGGGTGGACCGCGTGGAGGAAGAGGTGCTTG
GGGGGCGGTTGACTGTGAGGGAGGGAGAGAAGGAAGGAGGTGTGAT back to topprotein sequence of jgi.p|Nanoce1779_2|196993 >mRNA_8452-protein ID=mRNA_8452-protein|Name=jgi.p|Nanoce1779_2|196993|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MHTHTPHKDARRHPFLEIAAAIDWTSAAGGSACGVRSGAAAQGASGRQHK
MLVEWHPFLPDYFVAGGEELQLYQVNRQQQDQQDFASSGLPQPRSFRLLK
SVPIPQLTCFQCRPLEHPSFLAAVGTQHGRVHLVNFKQQRQEQEQEQQEQ
QRPEGECESKRGRSSIDKDYNQQQPKDKEDETSSTSSSFSFSSSSSSSFS
SSSSSFTRSLLSSPAGIVQTFAPKAVRLCTSVAWNPRSPSQLAVGLEKLR
SDPSLLIYDTLSSSSSSSSSSNNNNNNNNNNNNNNNNNNNNAGPSMVSSA
GIGASAAATTFTSVPSSFSPSSSSRPLASLALSEGVTALAFKHDLPHVLL
YGTSSRWLRMHDLRGSTPSNALSICAHSRKVKGLALHPSLPHVLASFSDA
PGEPVKGW* back to topmRNA from alignment at scaffold_24:321981..324766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8452 ID=mRNA_8452|Name=jgi.p|Nanoce1779_2|196993|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at scaffold_24:321981..324766- (Nannochloropsis oceanica)
AGGCGCACACAACTGGATAATCCCAAAACCCTCTAATACTTTTCACATGC
ACACTCACACACCGCACAAAGACGCAAGGCGACACCCTTTCCTTGAAATT
GCAGCTGCCATTGACTGGACATCTGCCGCAGGTGGAAGCGCCTGTGGGGT
CAGGAGTGGGGCAGCAGCGCAAGGAGCATCAGGCCGCCAACACAAAATGC
TTGTGGAATGGCACCCTTTCTTGCCCGATTACTTTGTCGCCGGTGGGGAG
GAGCTCCAGCTATACCAAGTGAACCGACAGCAGCAGGATCAGCAGGACTT
TGCAAGTAGCGGGCTGCCTCAGCCACGGTAAGGAGTTGGAGAGCAGGGGT
ATCTTCTTGTCTTGACCTCCCCTCCTGCTAGTCAAGTCCCAGAGATGCAT
GTACACACAAGCTAGCCATCCTCACTCTCACATGCGCACCCCTTCCAGAA
TTTGGGTTGCTATCGGAATAAAAATGAGTCATATTGGATTTCTCTTCCAG
CACGCGATTTGTTTGTTCTAACGAAGACATTCCTCCTCCTCACTTACCTC
CTACCCTCAAGCAGTTCCTTCCGCCTCCTCAAATCCGTGCCCATCCCGCA
GCTGACCTGCTTCCAATGCCGTCCCCTTGAACATCCCTCCTTCCTTGCCG
CCGTCGGTACCCAACACGGTCGAGTCCACCTGGTCAATTTCAAGCAGCAA
CGGCAAGAGCAGGAGCAGGAGCAGCAGGAGCAGCAGCGGCCGGAGGGTGA
GTGCGAAAGCAAAAGGGGGCGGTCCTCTATTGACAAAGATTACAACCAGC
AGCAGCCCAAAGATAAGGAGGATGAGACCTCGTCCACCTCTTCTTCCTTT
TCCTTTTCCTCCTCCTCTTCCTCCTCCTTTTCCTCCTCCTCCTCCTCGTT
CACTCGCTCCCTCCTCTCCTCTCCCGCTGGCATTGTGCAAACATTTGCTC
CAAAGGCTGTTCGTCTCTGTACCAGCGTTGCATGGAATCCCCGGTCTCCC
TCTCAACTAGCCGTTGGCCTGGAAAAACTCCGAAGCGACCCTTCCCTCCT
TATCTACGACACCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAATGCAGGCCCCTCCATGGTTTCCTCTGCTGGCATCGGTGCTTCTGC
TGCGGCCACGACCTTCACCTCTGTCCCTTCCTCCTTCTCTCCCTCCTCCT
CATCCCGGCCCCTCGCATCCCTTGCCTTGTCCGAAGGTGTCACGGCACTC
GCCTTCAAGCACGACCTCCCTCATGTCCTTCTCTATGGCACCTCCTCCCG
CTGGCTCCGAATGCACGATCTACGGGGATCAACGCCTTCCAACGCTCTCT
CCATCTGTGCCCATTCTCGAAAGGTAAACCCTTCTTCCCCTCCCTTCCTC
CCTCCTTCCTTCCCTCCTTTCCATCTCCATTCCCATCCTCCCTCCTTCCC
TCTCATCCCCCTTCCCGTCTTCCCACCTTTCTAAAAAAACAACCCTCCCT
CCCTTTCTCCTCTCTCTCCCTCCCTCCCTCCCTCCAGGTGAAAGGCCTGG
CCCTCCATCCCTCCCTCCCTCACGTCCTCGCCTCCTTCTCCGATGCCCCC
GGCGAGCCCGTCAAGCTTTGGGACCTTCGGAAGGTCGACTCCTCCACCAA
CCCCGAACCCCTGGCCACCTTCCGTCCCCTCCCTCTCTCCCTTCCTCCCT
CTCTCCCTCCCTCGTCCTCCTCGGTGTACACGGGGCAGCAGCGAAGGAGG
GAGGGAGGAAGCAGAGTCGGAGGAGGGTATACAGGAAGTAGTGGAGGGTA
CGGCGGCTATGGCAGCACCAGCGGCAGCAGCATCAGCAGCAACAATAACA
GCGGCGGCAGGTATCTTTCCACTTCCATCCAAGGGGGAGCAGGAGGAGGG
AGGGAGGGAGGGTGGAAGGGAGGGGTGGTGACGAATTTGGCCTGGTCGCC
GGTGAAGGGAAATACGTTAGCCGTTACTATGGGTGATGACCCTTCAGTCC
AGCTGTGGGAGGTGGGAGGGGAAGATGGGTGGGGAAATGAGGGGGCAGAG
CAGGTGCAGGTGGTGGTGGGGAGGGAGGGAGGGGCAGTGTTGGGCTTGAG
CTGGCAGGGGTCGACGGCCGTGGCGAGGATGAGGAGGAGGGCGGGAAGGA
GGAGAAGGAGGAGGGAGAGGAGGGAGAGAGAGGGGGGGGGTGAGCAAGAT
GAAGAGGACGAGGAGCGTGACGACAGCGAAGCGGAGAACGTGGATGAGGG
GGAGGGGGAGGAGGAGGAAGAGGCATGGAATGACATATTGGATCTGGCCT
CGCCGAATCGTCTGTTAATTAGCACCATTAAAGGTGGCTTTGAGCTGCTC
TCCATCCAGCCCTATAAGCCCCTCTCTTTCTCCCGTTCCTCCTCCCTCCT
CCTCCTCGGCTGCGGTCGGCTGTTGGTCACGTACGCCCTCCCTCCTTTCC
TCCCTCAACCTTTCTCGGTCCCCGGGGAGGAAGGTGAGGAGGGGAGGGAG
GAGGGGTTGGTGATGAGGAAGAGAGCGCAAGCAGGGTACGGTATGGACGT
CGGAAAAAATATTCAAATTATGGCGAACGAGGCAGAGGAAGCAGAGGAAG
GGAGAGAGGGAGCGAGGGAGGGAGGGAGGGCGGCAAGGAAGCTGATGCAC
GTGTGGATGTGGGTGGACCGCGTGGAGGAAGAGGTGCTTGGGGGGCGGTT
GACTGTGAGGGAGGGAGAGAAGGAAGGAGGTGTGAT back to topCoding sequence (CDS) from alignment at scaffold_24:321981..324766- >mRNA_8452 ID=mRNA_8452|Name=jgi.p|Nanoce1779_2|196993|organism=Nannochloropsis oceanica|type=CDS|length=4908bp|location=Sequence derived from alignment at scaffold_24:321981..324766- (Nannochloropsis oceanica)
GGGTTGGTGAGTGAAAGGCCTGGCCCTCCATCCCTCCCTCCCTCACGTCC
TCGCCTCCTTCTCCGATGCCCCCGGCGAGCCCGTCAATTCCTTCCGCCTC
CTCAAATCCGTGCCCATCCCGCAGCTGACCTGCTTCCAATGCCGTCCCCT
TGAACATCCCTCCTTCCTTGCCGCCGTCGGTACCCAACACGGTCGAGTCC
ACCTGGTCAATTTCAAGCAGCAACGGCAAGAGCAGGAGCAGGAGCAGCAG
GAGCAGCAGCGGCCGGAGGGTGAGTGCGAAAGCAAAAGGGGGCGGTCCTC
TATTGACAAAGATTACAACCAGCAGCAGCCCAAAGATAAGGAGGATGAGA
CCTCGTCCACCTCTTCTTCCTTTTCCTTTTCCTCCTCCTCTTCCTCCTCC
TTTTCCTCCTCCTCCTCCTCGTTCACTCGCTCCCTCCTCTCCTCTCCCGC
TGGCATTGTGCAAACATTTGCTCCAAAGGCTGTTCGTCTCTGTACCAGCG
TTGCATGGAATCCCCGGTCTCCCTCTCAACTAGCCGTTGGCCTGGAAAAA
CTCCGAAGCGACCCTTCCCTCCTTATCTACGACACCCTCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAATGCAGGCCCCTCCATGGTTTCC
TCTGCTGGCATCGGTGCTTCTGCTGCGGCCACGACCTTCACCTCTGTCCC
TTCCTCCTTCTCTCCCTCCTCCTCATCCCGGCCCCTCGCATCCCTTGCCT
TGTCCGAAGGTGTCACGGCACTCGCCTTCAAGCACGACCTCCCTCATGTC
CTTCTCTATGGCACCTCCTCCCGCTGGCTCCGAATGCACGATCTACGGGG
ATCAACGCCTTCCAACGCTCTCTCCATCTGTGCCCATTCTCGAAAGATGC
ACACTCACACACCGCACAAAGACGCAAGGCGACACCCTTTCCTTGAAATT
GCAGCTGCCATTGACTGGACATCTGCCGCAGGTGGAAGCGCCTGTGGGGT
CAGGAGTGGGGCAGCAGCGCAAGGAGCATCAGGCCGCCAACACAAAATGC
TTGTGGAATGGCACCCTTTCTTGCCCGATTACTTTGTCGCCGGTGGGGAG
GAGCTCCAGCTATACCAAGTGAACCGACAGCAGCAGGATCAGCAGGACTT
TGCAAGTAGCGGGCTGCCTCAGCCACGGGGTTGGTGAGTGAAAGGCCTGG
CCCTCCATCCCTCCCTCCCTCACGTCCTCGCCTCCTTCTCCGATGCCCCC
GGCGAGCCCGTCAATTCCTTCCGCCTCCTCAAATCCGTGCCCATCCCGCA
GCTGACCTGCTTCCAATGCCGTCCCCTTGAACATCCCTCCTTCCTTGCCG
CCGTCGGTACCCAACACGGTCGAGTCCACCTGGTCAATTTCAAGCAGCAA
CGGCAAGAGCAGGAGCAGGAGCAGCAGGAGCAGCAGCGGCCGGAGGGTGA
GTGCGAAAGCAAAAGGGGGCGGTCCTCTATTGACAAAGATTACAACCAGC
AGCAGCCCAAAGATAAGGAGGATGAGACCTCGTCCACCTCTTCTTCCTTT
TCCTTTTCCTCCTCCTCTTCCTCCTCCTTTTCCTCCTCCTCCTCCTCGTT
CACTCGCTCCCTCCTCTCCTCTCCCGCTGGCATTGTGCAAACATTTGCTC
CAAAGGCTGTTCGTCTCTGTACCAGCGTTGCATGGAATCCCCGGTCTCCC
TCTCAACTAGCCGTTGGCCTGGAAAAACTCCGAAGCGACCCTTCCCTCCT
TATCTACGACACCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAATGCAGGCCCCTCCATGGTTTCCTCTGCTGGCATCGGTGCTTCTGC
TGCGGCCACGACCTTCACCTCTGTCCCTTCCTCCTTCTCTCCCTCCTCCT
CATCCCGGCCCCTCGCATCCCTTGCCTTGTCCGAAGGTGTCACGGCACTC
GCCTTCAAGCACGACCTCCCTCATGTCCTTCTCTATGGCACCTCCTCCCG
CTGGCTCCGAATGCACGATCTACGGGGATCAACGCCTTCCAACGCTCTCT
CCATCTGTGCCCATTCTCGAAAGATGCACACTCACACACCGCACAAAGAC
GCAAGGCGACACCCTTTCCTTGAAATTGCAGCTGCCATTGACTGGACATC
TGCCGCAGGTGGAAGCGCCTGTGGGGTCAGGAGTGGGGCAGCAGCGCAAG
GAGCATCAGGCCGCCAACACAAAATGCTTGTGGAATGGCACCCTTTCTTG
CCCGATTACTTTGTCGCCGGTGGGGAGGAGCTCCAGCTATACCAAGTGAA
CCGACAGCAGCAGGATCAGCAGGACTTTGCAAGTAGCGGGCTGCCTCAGC
CACGGGGTTGGTGAGTGAAAGGCCTGGCCCTCCATCCCTCCCTCCCTCAC
GTCCTCGCCTCCTTCTCCGATGCCCCCGGCGAGCCCGTCAATTCCTTCCG
CCTCCTCAAATCCGTGCCCATCCCGCAGCTGACCTGCTTCCAATGCCGTC
CCCTTGAACATCCCTCCTTCCTTGCCGCCGTCGGTACCCAACACGGTCGA
GTCCACCTGGTCAATTTCAAGCAGCAACGGCAAGAGCAGGAGCAGGAGCA
GCAGGAGCAGCAGCGGCCGGAGGGTGAGTGCGAAAGCAAAAGGGGGCGGT
CCTCTATTGACAAAGATTACAACCAGCAGCAGCCCAAAGATAAGGAGGAT
GAGACCTCGTCCACCTCTTCTTCCTTTTCCTTTTCCTCCTCCTCTTCCTC
CTCCTTTTCCTCCTCCTCCTCCTCGTTCACTCGCTCCCTCCTCTCCTCTC
CCGCTGGCATTGTGCAAACATTTGCTCCAAAGGCTGTTCGTCTCTGTACC
AGCGTTGCATGGAATCCCCGGTCTCCCTCTCAACTAGCCGTTGGCCTGGA
AAAACTCCGAAGCGACCCTTCCCTCCTTATCTACGACACCCTCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAATGCAGGCCCCTCCATGGT
TTCCTCTGCTGGCATCGGTGCTTCTGCTGCGGCCACGACCTTCACCTCTG
TCCCTTCCTCCTTCTCTCCCTCCTCCTCATCCCGGCCCCTCGCATCCCTT
GCCTTGTCCGAAGGTGTCACGGCACTCGCCTTCAAGCACGACCTCCCTCA
TGTCCTTCTCTATGGCACCTCCTCCCGCTGGCTCCGAATGCACGATCTAC
GGGGATCAACGCCTTCCAACGCTCTCTCCATCTGTGCCCATTCTCGAAAG
ATGCACACTCACACACCGCACAAAGACGCAAGGCGACACCCTTTCCTTGA
AATTGCAGCTGCCATTGACTGGACATCTGCCGCAGGTGGAAGCGCCTGTG
GGGTCAGGAGTGGGGCAGCAGCGCAAGGAGCATCAGGCCGCCAACACAAA
ATGCTTGTGGAATGGCACCCTTTCTTGCCCGATTACTTTGTCGCCGGTGG
GGAGGAGCTCCAGCTATACCAAGTGAACCGACAGCAGCAGGATCAGCAGG
ACTTTGCAAGTAGCGGGCTGCCTCAGCCACGGGGTTGGTGAGTGAAAGGC
CTGGCCCTCCATCCCTCCCTCCCTCACGTCCTCGCCTCCTTCTCCGATGC
CCCCGGCGAGCCCGTCAATTCCTTCCGCCTCCTCAAATCCGTGCCCATCC
CGCAGCTGACCTGCTTCCAATGCCGTCCCCTTGAACATCCCTCCTTCCTT
GCCGCCGTCGGTACCCAACACGGTCGAGTCCACCTGGTCAATTTCAAGCA
GCAACGGCAAGAGCAGGAGCAGGAGCAGCAGGAGCAGCAGCGGCCGGAGG
GTGAGTGCGAAAGCAAAAGGGGGCGGTCCTCTATTGACAAAGATTACAAC
CAGCAGCAGCCCAAAGATAAGGAGGATGAGACCTCGTCCACCTCTTCTTC
CTTTTCCTTTTCCTCCTCCTCTTCCTCCTCCTTTTCCTCCTCCTCCTCCT
CGTTCACTCGCTCCCTCCTCTCCTCTCCCGCTGGCATTGTGCAAACATTT
GCTCCAAAGGCTGTTCGTCTCTGTACCAGCGTTGCATGGAATCCCCGGTC
TCCCTCTCAACTAGCCGTTGGCCTGGAAAAACTCCGAAGCGACCCTTCCC
TCCTTATCTACGACACCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAATGCAGGCCCCTCCATGGTTTCCTCTGCTGGCATCGGTGCTT
CTGCTGCGGCCACGACCTTCACCTCTGTCCCTTCCTCCTTCTCTCCCTCC
TCCTCATCCCGGCCCCTCGCATCCCTTGCCTTGTCCGAAGGTGTCACGGC
ACTCGCCTTCAAGCACGACCTCCCTCATGTCCTTCTCTATGGCACCTCCT
CCCGCTGGCTCCGAATGCACGATCTACGGGGATCAACGCCTTCCAACGCT
CTCTCCATCTGTGCCCATTCTCGAAAGATGCACACTCACACACCGCACAA
AGACGCAAGGCGACACCCTTTCCTTGAAATTGCAGCTGCCATTGACTGGA
CATCTGCCGCAGGTGGAAGCGCCTGTGGGGTCAGGAGTGGGGCAGCAGCG
CAAGGAGCATCAGGCCGCCAACACAAAATGCTTGTGGAATGGCACCCTTT
CTTGCCCGATTACTTTGTCGCCGGTGGGGAGGAGCTCCAGCTATACCAAG
TGAACCGACAGCAGCAGGATCAGCAGGACTTTGCAAGTAGCGGGCTGCCT
CAGCCACG back to top
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