jgi.p|Nanoce1779_2|196965, mRNA_8451 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|196965
Unique NamemRNA_8451
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1298
Alignment locationscaffold_24:319504..320960 -

Link to JBrowse

Properties
Property NameValue
TranscriptId197051
TrackFilteredModels2
ProteinId196965
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:319504..320960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196965gene_8451Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196965mRNA_8451-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8451CDS_8451Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8451 ID=mRNA_8451|Name=jgi.p|Nanoce1779_2|196965|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp
CTCCTCCCTCCCCCCCCCCCCCTCCGTCCCTCCCCAAATCCTTTCTCCCC
TCTTCCCTCTCCTCTCCCCCCTCCCTTTCTCCCCTCGTCCCTTCTTCTCA
TCCTTTTGCCCCTCTTCTTTTGGACCCCCAGCTCTCCCTTCCCGACCGGA
CAGGGCTTGCCTTGCTCTTCCTCCCTCCCTCCCTCCTCCTCCCCTTCCTC
CTGCACCTGTCTTACTCCTCCCTCTCTCAAGGTGATATCGAAGGGCTTTT
CTTACTGGGGTTGAATAAAGAGGGGAAACGACTCCTACAAGCCTACATAG
ATAAGCGAGGGGACATACAAACAGCAGCCCTGCTGGTGGGGAGGAAGAAG
GGGGGGAGGGAGGGAGGGCAGGAGGAAGGGAGGGAGGACGAGGAGCAGGA
GTGGGTGGAAGAGTATCGGTGTTGGCTGAATGAAGTGAGATTGTGGCATG
AGAGGGCCCGGTTTGATGTGGGGAGGATGAAGATCAGGCGAGGAGGGATG
CAACAGCAGCAACGACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
GCAACAGCAGCAACAGCGGCAAGGAGGAGGAGGCCAGACGGCTGTCCCTT
GGCGGTATCAAGCTTCCTCTACTACTGTTGGGCTGCCCCTCTCACCCACC
CACCCACCCCCTCCCCCTTCTTCTTCTTCCTCTTCCTCAACCCATCCGTC
CATCCCTCCCCAGCTCTACATCCGCTGCAATTTCTGCCACACCGCTATTC
ATCTCTCAACCCTCAGACGGCAAGGTCGCTCTGGTCAGTCCTGGCTGTCC
CGTCAGAAGCCTCTTCTCTCCTGTTGCCCCGAATGCCGGAAACCCCTCCC
GCGCTGCTTCCTCTGTCTCCTCCCTCTTGGTGCTCTTAATCCCTACCTTG
AACTCCGCCGACTGATACATCGGCAGCAGCAGCAGCTGCTGCAAAGACGG
GAGGAGGGGAGGAGTGAGGGAGTGGGGGACGGAGGGTTAGAGGGCTTGTC
GGGGGTGAGGTTTGGCGAGTGGTGGACTTGGTGTCAGCACTGTGGGCATG
GTGGGCACGCGCATCATGTGCGTGATTGGTTCGAAGGAGGGAGGGAGGGA
AGGAGGGAAGTGTGTGGGGTAAGCGGGTGTGCGTGTCGGTGTATGATGAG
GGATATGGCAGTGTATGGAGGAGAAGGGGGAGGTCGAGGGGAAGAGTGGG
ATGGGGAGAGGTAGAAAGAGACGGGAAAAGGAAAAGGGTGAGGCGATCAG
GCAGAATTTAGGGAGCGAAATGAAAAATTATAGGGGGGCATGGCGACA
back to top

protein sequence of jgi.p|Nanoce1779_2|196965

>mRNA_8451-protein ID=mRNA_8451-protein|Name=jgi.p|Nanoce1779_2|196965|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MKIRRGGMQQQQRQQQQQQQQQQQQQQQQQRQGGGGQTAVPWRYQASSTT
VGLPLSPTHPPPPPSSSSSSSTHPSIPPQLYIRCNFCHTAIHLSTLRRQG
RSGQSWLSRQKPLLSCCPECRKPLPRCFLCLLPLGALNPYLELRRLIHRQ
QQQLLQRREEGRSEGVGDGGLEGLSGVRFGEWWTWCQHCGHGGHAHHVRD
WFEGGREGRREVCGVSGCACRCMMRDMAVYGGEGGGRGEEWDGER*
back to top

mRNA from alignment at scaffold_24:319504..320960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8451 ID=mRNA_8451|Name=jgi.p|Nanoce1779_2|196965|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_24:319504..320960- (Nannochloropsis oceanica)
CTCCTCCCTCCCCCCCCCCCCCTCCGTCCCTCCCCAAATCCTTTCTCCCC
TCTTCCCTCTCCTCTCCCCCCTCCCTTTCTCCCCTCGTCCCTTCTTCTCA
TCCTTTTGCCCCTCTTCTTTTGGACCCCCAGCTCTCCCTTCCCGACCGGA
CAGGGCTTGCCTTGCTCTTCCTCCCTCCCTCCCTCCTCCTCCCCTTCCTC
CTGCACCTGTCTTACTCCTCCCTCTCTCAAGGTGATATCGAAGGGCTTTT
CTTACTGGGGTTGAATAAAGAGGGGAAACGACTCCTACAAGCCTACATAG
ATAAGCGAGGGGACATACAAACAGCAGCCCTGCTGGTGGGGAGGAAGAAG
GGGGGGAGGGAGGGAGGGCAGGAGGAAGGGAGGGAGGACGAGGAGCAGGA
GTGGGTGGAAGAGTATCGGTGTTGGCTGAATGAAGTGAGATTGTGGCATG
AGAGGGCCCGGTTTGATGTGGGGAGGATGAAGATCAGGCGAGGAGGGATG
CAACAGCAGCAACGACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
GCAACAGCAGCAACAGCGGCAAGGAGGAGGAGGCCAGACGGCTGTCCCTT
GGCGGTATCAAGCTTCCTCTACTACTGTTGGGCTGCCCCTCTCACCCACC
CACCCACCCCCTCCCCCTTCTTCTTCTTCCTCTTCCTCAACCCATCCGTC
CATCCCTCCCCAGCTCTACATCCGCTGCAATTTCTGCCACACCGCTATTC
ATCTCTCAACCCTCAGACGGCAAGGTCGCTCTGGTCAGGTAAGACTCTTA
CCCTCCCTCCCCCCCTCGTTCCCTCCCCTCCATCATATCTTCCTCCTGAT
CTACCTTTGAGACTTGTAGGTTAAATTTTTGCCCGTCCTCGTCACTCCCT
CACCTTGCCCTCCTTCCATACCTCCCTCGCGCCCCCCCTCCGCCTAGTCC
TGGCTGTCCCGTCAGAAGCCTCTTCTCTCCTGTTGCCCCGAATGCCGGAA
ACCCCTCCCGCGCTGCTTCCTCTGTCTCCTCCCTCTTGGTGCTCTTAATC
CCTACCTTGAACTCCGCCGACTGATACATCGGCAGCAGCAGCAGCTGCTG
CAAAGACGGGAGGAGGGGAGGAGTGAGGGAGTGGGGGACGGAGGGTTAGA
GGGCTTGTCGGGGGTGAGGTTTGGCGAGTGGTGGACTTGGTGTCAGCACT
GTGGGCATGGTGGGCACGCGCATCATGTGCGTGATTGGTTCGAAGGAGGG
AGGGAGGGAAGGAGGGAAGTGTGTGGGGTAAGCGGGTGTGCGTGTCGGTG
TATGATGAGGGATATGGCAGTGTATGGAGGAGAAGGGGGAGGTCGAGGGG
AAGAGTGGGATGGGGAGAGGTAGAAAGAGACGGGAAAAGGAAAAGGGTGA
GGCGATCAGGCAGAATTTAGGGAGCGAAATGAAAAATTATAGGGGGGCAT
GGCGACA
back to top

Coding sequence (CDS) from alignment at scaffold_24:319504..320960-

>mRNA_8451 ID=mRNA_8451|Name=jgi.p|Nanoce1779_2|196965|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_24:319504..320960- (Nannochloropsis oceanica)
TCCTGGCTGTCCCGTCAGAAGCCTCTTCTCTCCTGTTGCCCCGAATGCCG
GAAACCCCTCCCGCGCTGCTTCCTCTGTCTCCTCCCTCTTGGTGCTCTTA
ATCCCTACCTTGAACTCCGCCGACTGATACATCGGCAGCAGCAGCAGCTG
CTGCAAAGACGGGAGGAGGGGAGGAGTGAGGGAGTGGGGGACGGAGGGTT
AGAGGGCTTGTCGGGGGTGAGGTTTGGCGAGTGGTGGACTTGGTGTCAGC
ACTGTGGGCATGGTGGGCACGCGCATCATGTGCGTGATTGGTTCGAAGGA
GGGAGGGAGGGAAGGAGGGAAGTGTGTGGGGTAAGCGGGTGTGCGTGTCG
GTGTATGATGAGGGATATGGCAGTGTATGGAGGAGAAGGGGGAGGTCGAG
GGGAAGAGTGGGATGGGGAGAGGTAGATGAAGATCAGGCGAGGAGGGATG
CAACAGCAGCAACGACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
GCAACAGCAGCAACAGCGGCAAGGAGGAGGAGGCCAGACGGCTGTCCCTT
GGCGGTATCAAGCTTCCTCTACTACTGTTGGGCTGCCCCTCTCACCCACC
CACCCACCCCCTCCCCCTTCTTCTTCTTCCTCTTCCTCAACCCATCCGTC
CATCCCTCCCCAGCTCTACATCCGCTGCAATTTCTGCCACACCGCTATTC
ATCTCTCAACCCTCAGACGGCAAGGTCGCTCTGGTCAGTCCTGGCTGTCC
CGTCAGAAGCCTCTTCTCTCCTGTTGCCCCGAATGCCGGAAACCCCTCCC
GCGCTGCTTCCTCTGTCTCCTCCCTCTTGGTGCTCTTAATCCCTACCTTG
AACTCCGCCGACTGATACATCGGCAGCAGCAGCAGCTGCTGCAAAGACGG
GAGGAGGGGAGGAGTGAGGGAGTGGGGGACGGAGGGTTAGAGGGCTTGTC
GGGGGTGAGGTTTGGCGAGTGGTGGACTTGGTGTCAGCACTGTGGGCATG
GTGGGCACGCGCATCATGTGCGTGATTGGTTCGAAGGAGGGAGGGAGGGA
AGGAGGGAAGTGTGTGGGGTAAGCGGGTGTGCGTGTCGGTGTATGATGAG
GGATATGGCAGTGTATGGAGGAGAAGGGGGAGGTCGAGGGGAAGAGTGGG
ATGGGGAGAGGTAGATGAAGATCAGGCGAGGAGGGATGCAACAGCAGCAA
CGACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCA
ACAGCGGCAAGGAGGAGGAGGCCAGACGGCTGTCCCTTGGCGGTATCAAG
CTTCCTCTACTACTGTTGGGCTGCCCCTCTCACCCACCCACCCACCCCCT
CCCCCTTCTTCTTCTTCCTCTTCCTCAACCCATCCGTCCATCCCTCCCCA
GCTCTACATCCGCTGCAATTTCTGCCACACCGCTATTCATCTCTCAACCC
TCAGACGGCAAGGTCGCTCTGGTCAG
back to top
Synonyms
Publications