jgi.p|Nanoce1779_2|143581, mRNA_845 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|143581
Unique NamemRNA_845
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1690
Alignment locationscaffold_2:570289..571978 -

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Properties
Property NameValue
TranscriptId143667
TrackFilteredModels2
ProteinId143581
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:570289..571978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|143581gene_845Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|143581mRNA_845-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_845CDS_845Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_845 ID=mRNA_845|Name=jgi.p|Nanoce1779_2|143581|organism=Nannochloropsis oceanica|type=mRNA|length=1690bp
TTTGCTTGTTAAGTTAATGTAGAAGTGGAGTCCGAAAATTGGATGGGGCT
ATGCATTGTCTGGCGATCTGATCGTAAAACACAGGAACAGAAGAGGCACG
GAGGGCAGGCAAGCTATATACGCCCCCCACATTGGCTCATACTACACCTA
AAACCCAAAATGTTTAGGCACACAATGGTTCAAGAAGCAGCGTGGACGCA
GGCATGCAAATCCCAATTCCCGTGGATGGAATTGGCGGATTTGCTTCAGG
TATGTTGGCTTGTCTTCTTGAGTTCACGTCTCCCCTCCCCCGTCTTTCGC
CCATCCCTCGCTCCATGTTACTTCTCCAACACGCAAAACCTACCAAATCT
TACGTTCAGACGGACATCCGGAAGCTGGAGGGAGACCGTATCCCGCTGCC
CAAGATGGACGACGTAACAGGTACTATTGGGGGTCCCTTCATTCTTCAAA
TTGTAAGCGTCATTGATGGGACCAAACCCAGCAGCAAGCAGCATATTGGG
GACGGAGGGCAAGAGCGTGTGCTCCTGCTACGTGTCACCGATGGAACGTC
CAGTAAATTCACGGCGATCGAGATGGTACGCCTCCCCAAGCTGAGCACGG
ACACGCCGCCGGGCACAAAGCTACTGGTGAGCGACGTGCGGTATGTGAAG
CACAAATTGCTTCTGCAGCCCTGCTCGGTGCTGGGTGTGGAGGGCGTGGT
CGAAGCCTTGGCCAACAATTTTAGGAGCAGTCGCCTCTTGGAGCAACAAT
ACAAACTCAGCAAGGACCTGCAAGTAAAGAAGAAAAATGCGGCGGGGGAA
GGTCCCCCGGCGTTTGATGCTTTCAAGCCTGATGCCTCCAAGAGTGGTAA
TGGTGCAGGAGGAGAGCCCGGAAGTGGTCATTCGCAAGGCAAGTCCAAGT
CATCGATGCCCCATCCTTCGCCTGCTACCATCCCTCTTGCTGCCCTTAAG
CATGCCGATGTCAGGGATAAGGGAGCTACAATACACTCTTCTTGCGAGAT
TCATGGGCCAAGCAGCCAAGGGCGGGGCGGACAGAACAATCATCGTAGCA
GCCGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGGAGC
AGCTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGACTA
TGACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGTATA
GGGGAGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGA
GGTTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCC
TTCTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGG
ATCCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGAGGGCGAGGGGAAGGA
GGAAGTGGATATAGCAGTAGAAGCGGTGCTCGTGGCAGCGTTGGGGGCCG
GGGTGGTGGTCGAGGACAACAGGGCGATCGAGGATGGAGGGGAGGAAGAG
GAAGAGGAGGAAGAAGGGGAGGACGAGGTGGTGGGTATGGCCCTTCGAAC
TCCTCCTCTTCTTCGGCTGAGCCAAGCGTTCATTCCTTGGAAGCCCATTT
CCAGATAAATGGGATTTGAAAGAGAATTACAAAGGGCCTTATACACATAT
GTAAAAGAAGAACAACACAGCAACTCCCATCAAAAATCAA
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protein sequence of jgi.p|Nanoce1779_2|143581

>mRNA_845-protein ID=mRNA_845-protein|Name=jgi.p|Nanoce1779_2|143581|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MQIPIPVDGIGGFASGMLACLLEFTSPLPRLSPIPRSMLLLQHAKPTKSY
VQTDIRKLEGDRIPLPKMDDVTGTIGGPFILQIVSVIDGTKPSSKQHIGD
GGQERVLLLRVTDGTSSKFTAIEMVRLPKLSTDTPPGTKLLVSDVRYVKH
KLLLQPCSVLGVEGVVEALANNFRSSRLLEQQYKLSKDLQVKKKNAAGEG
PPAFDAFKPDASKSGNGAGGEPGSGHSQGKSKSSMPHPSPATIPLAALKH
ADVRDKGATIHSSCEIHGPSSQGRGGQNNHRSSRGRDQTRGCGTSRGRSS
SRGDGTPSQSYGGADYDSRSSAVDPLPPSSSYRGGQNNHRSSRGRDQTRG
CGTSRGRSSSRGDGTPSQSYGGADYDSRSSAVDPLPPSSSYRGGGRGEGG
SGYSSRSGARGSVGGRGGGRGQQGDRGWRGGRGRGGRRGGRGGGYGPSNS
SSSSAEPSVHSLEAHFQINGI*
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mRNA from alignment at scaffold_2:570289..571978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_845 ID=mRNA_845|Name=jgi.p|Nanoce1779_2|143581|organism=Nannochloropsis oceanica|type=mRNA|length=1690bp|location=Sequence derived from alignment at scaffold_2:570289..571978- (Nannochloropsis oceanica)
TTTGCTTGTTAAGTTAATGTAGAAGTGGAGTCCGAAAATTGGATGGGGCT
ATGCATTGTCTGGCGATCTGATCGTAAAACACAGGAACAGAAGAGGCACG
GAGGGCAGGCAAGCTATATACGCCCCCCACATTGGCTCATACTACACCTA
AAACCCAAAATGTTTAGGCACACAATGGTTCAAGAAGCAGCGTGGACGCA
GGCATGCAAATCCCAATTCCCGTGGATGGAATTGGCGGATTTGCTTCAGG
TATGTTGGCTTGTCTTCTTGAGTTCACGTCTCCCCTCCCCCGTCTTTCGC
CCATCCCTCGCTCCATGTTACTTCTCCAACACGCAAAACCTACCAAATCT
TACGTTCAGACGGACATCCGGAAGCTGGAGGGAGACCGTATCCCGCTGCC
CAAGATGGACGACGTAACAGGTACTATTGGGGGTCCCTTCATTCTTCAAA
TTGTAAGCGTCATTGATGGGACCAAACCCAGCAGCAAGCAGCATATTGGG
GACGGAGGGCAAGAGCGTGTGCTCCTGCTACGTGTCACCGATGGAACGTC
CAGTAAATTCACGGCGATCGAGATGGTACGCCTCCCCAAGCTGAGCACGG
ACACGCCGCCGGGCACAAAGCTACTGGTGAGCGACGTGCGGTATGTGAAG
CACAAATTGCTTCTGCAGCCCTGCTCGGTGCTGGGTGTGGAGGGCGTGGT
CGAAGCCTTGGCCAACAATTTTAGGAGCAGTCGCCTCTTGGAGCAACAAT
ACAAACTCAGCAAGGACCTGCAAGTAAAGAAGAAAAATGCGGCGGGGGAA
GGTCCCCCGGCGTTTGATGCTTTCAAGCCTGATGCCTCCAAGAGTGGTAA
TGGTGCAGGAGGAGAGCCCGGAAGTGGTCATTCGCAAGGCAAGTCCAAGT
CATCGATGCCCCATCCTTCGCCTGCTACCATCCCTCTTGCTGCCCTTAAG
CATGCCGATGTCAGGGATAAGGGAGCTACAATACACTCTTCTTGCGAGAT
TCATGGGCCAAGCAGCCAAGGGCGGGGCGGACAGAACAATCATCGTAGCA
GCCGTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGGAGC
AGCTCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGACTA
TGACAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGTATA
GGGGAGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGA
GGTTGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCC
TTCTCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGG
ATCCTCTTCCTCCTTCTTCTTCGTATAGGGGAGGAGGGCGAGGGGAAGGA
GGAAGTGGATATAGCAGTAGAAGCGGTGCTCGTGGCAGCGTTGGGGGCCG
GGGTGGTGGTCGAGGACAACAGGGCGATCGAGGATGGAGGGGAGGAAGAG
GAAGAGGAGGAAGAAGGGGAGGACGAGGTGGTGGGTATGGCCCTTCGAAC
TCCTCCTCTTCTTCGGCTGAGCCAAGCGTTCATTCCTTGGAAGCCCATTT
CCAGATAAATGGGATTTGAAAGAGAATTACAAAGGGCCTTATACACATAT
GTAAAAGAAGAACAACACAGCAACTCCCATCAAAAATCAA
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Coding sequence (CDS) from alignment at scaffold_2:570289..571978-

>mRNA_845 ID=mRNA_845|Name=jgi.p|Nanoce1779_2|143581|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_2:570289..571978- (Nannochloropsis oceanica)
ATGCAAATCCCAATTCCCGTGGATGGAATTGGCGGATTTGCTTCAGGTAT
GTTGGCTTGTCTTCTTGAGTTCACGTCTCCCCTCCCCCGTCTTTCGCCCA
TCCCTCGCTCCATGTTACTTCTCCAACACGCAAAACCTACCAAATCTTAC
GTTCAGACGGACATCCGGAAGCTGGAGGGAGACCGTATCCCGCTGCCCAA
GATGGACGACGTAACAGGTACTATTGGGGGTCCCTTCATTCTTCAAATTG
TAAGCGTCATTGATGGGACCAAACCCAGCAGCAAGCAGCATATTGGGGAC
GGAGGGCAAGAGCGTGTGCTCCTGCTACGTGTCACCGATGGAACGTCCAG
TAAATTCACGGCGATCGAGATGGTACGCCTCCCCAAGCTGAGCACGGACA
CGCCGCCGGGCACAAAGCTACTGGTGAGCGACGTGCGGTATGTGAAGCAC
AAATTGCTTCTGCAGCCCTGCTCGGTGCTGGGTGTGGAGGGCGTGGTCGA
AGCCTTGGCCAACAATTTTAGGAGCAGTCGCCTCTTGGAGCAACAATACA
AACTCAGCAAGGACCTGCAAGTAAAGAAGAAAAATGCGGCGGGGGAAGGT
CCCCCGGCGTTTGATGCTTTCAAGCCTGATGCCTCCAAGAGTGGTAATGG
TGCAGGAGGAGAGCCCGGAAGTGGTCATTCGCAAGGCAAGTCCAAGTCAT
CGATGCCCCATCCTTCGCCTGCTACCATCCCTCTTGCTGCCCTTAAGCAT
GCCGATGTCAGGGATAAGGGAGCTACAATACACTCTTCTTGCGAGATTCA
TGGGCCAAGCAGCCAAGGGCGGGGCGGACAGAACAATCATCGTAGCAGCC
GTGGTCGTGATCAGACGCGAGGTTGTGGTACCAGCAGAGGCAGGAGCAGC
TCTAGAGGAGATGGCACTCCTTCTCAGTCCTACGGTGGTGCAGACTATGA
CAGTCGCAGTAGCGCGGTGGATCCTCTTCCTCCTTCTTCTTCGTATAGGG
GAGGACAGAACAATCATCGTAGCAGCCGTGGTCGTGATCAGACGCGAGGT
TGTGGTACCAGCAGAGGCAGGAGCAGCTCTAGAGGAGATGGCACTCCTTC
TCAGTCCTACGGTGGTGCAGACTATGACAGTCGCAGTAGCGCGGTGGATC
CTCTTCCTCCTTCTTCTTCGTATAGGGGAGGAGGGCGAGGGGAAGGAGGA
AGTGGATATAGCAGTAGAAGCGGTGCTCGTGGCAGCGTTGGGGGCCGGGG
TGGTGGTCGAGGACAACAGGGCGATCGAGGATGGAGGGGAGGAAGAGGAA
GAGGAGGAAGAAGGGGAGGACGAGGTGGTGGGTATGGCCCTTCGAACTCC
TCCTCTTCTTCGGCTGAGCCAAGCGTTCATTCCTTGGAAGCCCATTTCCA
GATAAATGGGATTTGA
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Synonyms
Publications