jgi.p|Nanoce1779_2|559475, mRNA_8447 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559475
Unique Name	mRNA_8447
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1486
Alignment location	scaffold_24:304574..306158 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	559561
Track	FilteredModels2
ProteinId	559475

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:304574..306158 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559475	gene_8447	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559475	mRNA_8447-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8447	CDS_8447	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:304574..306158+
coding sequence from alignment at scaffold_24:304574..306158+

mRNA sequence

>mRNA_8447 ID=mRNA_8447|Name=jgi.p|Nanoce1779_2|559475|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
ATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACATCTTTGC
CGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTGCGGCGCC
TTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATTTGACGTA
CTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTGGGAACGC
AACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTTGCCAAAA
CGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCTCCTCCTT
CTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCTCTTCAAC
CACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCGCTTGCGG
ACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCATTTTGACT
TACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGACGGGGCC
TGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGGGGGATGG
ACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGAGAGTGTT
GGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGAAGCTCAA
CAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATCTGGAGTA
GTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGCTTTGTCA
GAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTCGTATGGG
AGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAATATATGA
GTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTACGGCAAA
GAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAAAAGGGCA
AAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATATTATGGAG
AGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTTCCTCGGG
ATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGATGCGTGA
TTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAATCCCTCC
ATCCATCCGTCCGGGAGATTATTTCCTCCGACCATGAGCGGACTTTGCCT
ACAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGCACTCCA
TTTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTCTGGGCA
CGGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGGGACACC
AAGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGTTGGCAC
GGAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGTAATGTA
AATGAATAAGGAATTAAGTCGATCTAAGACTTGATG

protein sequence of jgi.p|Nanoce1779_2|559475

>mRNA_8447-protein ID=mRNA_8447-protein|Name=jgi.p|Nanoce1779_2|559475|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MPGIQHHENDDDSDIFAVTAARGFLPVRDPLRRLPTQTTLSTSPPLLFDV
LEALGDDLPKLLLCGNATLRQEIETRLNAVVAKTLPSSLSSEVEERLLLL
LSFISHAYVWGRSPSSTTTSTVHDCDSIPTPLADLWIEVARRRGRPPILT
YSSFNLFNWRRMDKTGPVALGNIACLNNFLGGMDEEWFRCVHIHIEAESV
GSLRAMLRYVEESEKLNSSNSTNNSGNRSGIWSSSGKTPLLLSLLEEALS
EITICLATIRAVLARMGEGCDPHIYYSRVRQYMSGWRNNPALPHGLLYGK
EKEGKTEGGTKEDVKGQKEKAAAGLRERRQYYGETGAQSCILPAVDAFLG
IIHEMDSMREYLLEMRDYVPRAHLAFLLRLESLHPSVREIISSDHERTLP
TAYDQAVKALARFRALHLHAADTYINKPAESLGTGGSDFRVYLRKHHRDT
KAQLLQSRERGSDGVGTEEEDREVGEPGVKV*

mRNA from alignment at scaffold_24:304574..306158+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8447 ID=mRNA_8447|Name=jgi.p|Nanoce1779_2|559475|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_24:304574..306158+ (Nannochloropsis oceanica)
ATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACATCTTTGC
CGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTGCGGCGCC
TTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATTTGACGTA
CTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTGGGAACGC
AACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTTGCCAAAA
CGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCTCCTCCTT
CTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCTCTTCAAC
CACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCGCTTGCGG
ACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCATTTTGACT
TACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGACGGGGCC
TGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGGGGGATGG
ACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGAGAGTGTT
GGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGAAGCTCAA
CAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATCTGGAGTA
GTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGCTTTGTCA
GAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTCGTATGGG
AGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAATATATGA
GTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTACGGCAAA
GAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAAAAGGGCA
AAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATATTATGGAG
AGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTTCCTCGGG
ATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGATGCGTGA
TTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAATCCCTCC
ATCCATCCGTCCGGGAGATTGTAGCACAACAGGAAGACGGGAGGCAAGTA
GGAAGAGGAGGAGAAAGAGGAGGAAAGGGAGGGACAGGAGAGAGAGAGAT
AAGTGGTGCGGTCGTGGAGATTTCCTCCGACCATGAGCGGACTTTGCCTA
CAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGCACTCCAT
TTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTCTGGGCAC
GGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGGGACACCA
AGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGTTGGCACG
GAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGTAATGTAA
ATGAATAAGGAATTAAGTCGATCTAAGACTTGATG

Coding sequence (CDS) from alignment at scaffold_24:304574..306158+

>mRNA_8447 ID=mRNA_8447|Name=jgi.p|Nanoce1779_2|559475|organism=Nannochloropsis oceanica|type=CDS|length=2892bp|location=Sequence derived from alignment at scaffold_24:304574..306158+ (Nannochloropsis oceanica)
ATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACATCTTTGC
CGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTGCGGCGCC
TTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATTTGACGTA
CTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTGGGAACGC
AACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTTGCCAAAA
CGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCTCCTCCTT
CTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCTCTTCAAC
CACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCGCTTGCGG
ACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCATTTTGACT
TACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGACGGGGCC
TGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGGGGGATGG
ACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGAGAGTGTT
GGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGAAGCTCAA
CAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATCTGGAGTA
GTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGCTTTGTCA
GAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTCGTATGGG
AGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAATATATGA
GTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTACGGCAAA
GAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAAAAGGGCA
AAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATATTATGGAG
AGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTTCCTCGGG
ATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGATGCGTGA
TTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAATCCCTCC
ATCCATCCGTCCGGGAGATTATTTCCTCCGACCATGAGCGGACTTTGCCT
ACAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGCACTCCA
TTTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTCTGGGCA
CGGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGGGACACC
AAGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGTTGGCAC
GGAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGTAAATGC
CTGGCATACAACACCACGAAAACGATGACGACAGTGACATCTTTGCCGTG
ACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTGCGGCGCCTTCC
TACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATTTGACGTACTTG
AAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTGGGAACGCAACG
CTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTTGCCAAAACGCT
ACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCTCCTCCTTCTCT
CCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCTCTTCAACCACT
ACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCGCTTGCGGACTT
ATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCATTTTGACTTACT
CGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGACGGGGCCTGTC
GCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGGGGGATGGACGA
GGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGAGAGTGTTGGGT
CGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGAAGCTCAACAGC
AGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATCTGGAGTAGTAG
CGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGCTTTGTCAGAAA
TCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTCGTATGGGAGAA
GGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAATATATGAGTGG
TTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTACGGCAAAGAGA
AGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAAAAGGGCAAAAG
GAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATATTATGGAGAGAC
TGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTTCCTCGGGATCA
TCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGATGCGTGATTAC
GTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAATCCCTCCATCC
ATCCGTCCGGGAGATTATTTCCTCCGACCATGAGCGGACTTTGCCTACAG
CATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGCACTCCATTTA
CATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTCTGGGCACGGG
TGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGGGACACCAAGG
CGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGTTGGCACGGAG
GAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGTAA

Synonyms

Publications