jgi.p|Nanoce1779_2|602065, mRNA_8445 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602065
Unique NamemRNA_8445
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1319
Alignment locationscaffold_24:299595..300913 -

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Properties
Property NameValue
TranscriptId602151
TrackFilteredModels2
ProteinId602065
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:299595..300913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602065gene_8445Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602065mRNA_8445-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8445CDS_8445Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8445 ID=mRNA_8445|Name=jgi.p|Nanoce1779_2|602065|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
ACAGCCCGCAGGGCGGCCCGGATATTTGTTGGGCGTACGACGTCTCACCT
CAACAACTCCGCGCTCGCCCCTGCCGTGGACTCACCATCCTGCTGAGGAA
TAGCACTCGCACTCTGCCACGCCGCCCTCCCGCCACGTATAAAGCTGCAG
CTTCGTTCTCCACAGTCATCTCCTCAGCAAGCACTGGACCCTTCCCACCT
CCCTATAAAAATCGTTACACTACCACCACGGGATCCGGCCTGTGATTTCC
CGTCCCAGTACTACTACCCCTTTCTGTCTCTAGCCAACACCACTATGAAT
TCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCCCCACGG
AGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCTCTTCCT
TCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCTCTTCAC
AATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGATGCTGGG
CGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTGCTACAG
CAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAACCAAGG
AGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGAAGGAGA
GTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAATTTCCTC
CGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGATCTAGAG
GAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACCCCATCC
ATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCCCCCTGT
CCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGACTAACA
GGAGTAGCAAAGCGAAAGGTGTGTGTAACGTCAAAGGCTCAAAACGGAGA
AAGAGAAAGGAAGATGGAAAGGATGTGATTTTTTTTTCAATTTTAAAACC
ATGCAGAAACGTGAGGAAGTAAGAGCATTGCTCAGAGATTTGCATTTAAG
CTGTGTTTGTGCATGTACGGGTCTGTGATTTTGGGTGCCGAAGCCAGGGA
GAAGAGGTAAGCAAGAAGAAGGCGAGGATACAGGGTGAGAGAGAAGGAGA
GGGAGAAGGAGGGGAAGAGAAGGAAAAGGACGGGAACAAGAGGAGGACTG
AAAAGAAGGAGAAGAGGAAGATGGTTTACATGTACAAACAATAGGGGGGG
GGGATACCAATGAACTAGCAGGCATGGATGGAGTCGAGAGACGGTGGCCG
AGGAGTCTATATTTGTTTC
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protein sequence of jgi.p|Nanoce1779_2|602065

>mRNA_8445-protein ID=mRNA_8445-protein|Name=jgi.p|Nanoce1779_2|602065|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MNSYARTSPSFVICTAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTA
LHNGAGASSLPPSPSLMLGVDGTLVVSEWPVVSATAGSVDVFPLSRAGLK
PRSVDSDQDGEGEEVSEGELMTQEEEKDENEMEFPPGPALFCRTRAVLVD
LEEQGGRDGENGEEEEPHPLSPINFSSSPLPHFPLSKHSSLQPPAVGARR
LTGVAKRKVCVTSKAQNGERERKMERM*
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mRNA from alignment at scaffold_24:299595..300913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8445 ID=mRNA_8445|Name=jgi.p|Nanoce1779_2|602065|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp|location=Sequence derived from alignment at scaffold_24:299595..300913- (Nannochloropsis oceanica)
ACAGCCCGCAGGGCGGCCCGGATATTTGTTGGGCGTACGACGTCTCACCT
CAACAACTCCGCGCTCGCCCCTGCCGTGGACTCACCATCCTGCTGAGGAA
TAGCACTCGCACTCTGCCACGCCGCCCTCCCGCCACGTATAAAGCTGCAG
CTTCGTTCTCCACAGTCATCTCCTCAGCAAGCACTGGACCCTTCCCACCT
CCCTATAAAAATCGTTACACTACCACCACGGGATCCGGCCTGTGATTTCC
CGTCCCAGTACTACTACCCCTTTCTGTCTCTAGCCAACACCACTATGAAT
TCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCCCCACGG
AGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCTCTTCCT
TCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCTCTTCAC
AATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGATGCTGGG
CGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTGCTACAG
CAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAACCAAGG
AGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGAAGGAGA
GTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAATTTCCTC
CGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGATCTAGAG
GAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACCCCATCC
ATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCCCCCTGT
CCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGACTAACA
GGAGTAGCAAAGCGAAAGGTGTGTGTAACGTCAAAGGCTCAAAACGGAGA
AAGAGAAAGGAAGATGGAAAGGATGTGATTTTTTTTTCAATTTTAAAACC
ATGCAGAAACGTGAGGAAGTAAGAGCATTGCTCAGAGATTTGCATTTAAG
CTGTGTTTGTGCATGTACGGGTCTGTGATTTTGGGTGCCGAAGCCAGGGA
GAAGAGGTAAGCAAGAAGAAGGCGAGGATACAGGGTGAGAGAGAAGGAGA
GGGAGAAGGAGGGGAAGAGAAGGAAAAGGACGGGAACAAGAGGAGGACTG
AAAAGAAGGAGAAGAGGAAGATGGTTTACATGTACAAACAATAGGGGGGG
GGGATACCAATGAACTAGCAGGCATGGATGGAGTCGAGAGACGGTGGCCG
AGGAGTCTATATTTGTTTC
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Coding sequence (CDS) from alignment at scaffold_24:299595..300913-

>mRNA_8445 ID=mRNA_8445|Name=jgi.p|Nanoce1779_2|602065|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_24:299595..300913- (Nannochloropsis oceanica)
ATGAATTCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTG
CTACAGCAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAA
CCAAGGAGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGA
AGGAGAGTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAAT
TTCCTCCGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGAT
CTAGAGGAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACC
CCATCCATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCC
CCCTGTCCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGA
CTAACAGGAGTAGCAAAGCGAAAGGTGTGTGTAACGTCAAAGGCTCAAAA
CGGAGAAAGAGAAAGGAAGATGGAAAGGATGTGA
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Synonyms
Publications